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2024-03-28 23:03:07, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Homo sapiens RWD domain containing 2A (RWDD2A), transcript variant 2, mRNA. (3550 bp)
aagcgtggagacagaaggaaatggtgaggacctgcgccttttccattcttttgaagagttactccttgaggctcatggtgactatggattaaggaatgactatcacatgaatctgggccaattcttagaatttctcaagaagcacaaaagtgagcatgtttttcagatactatttggtattgaaagcaaaagttcagactcataaaaagcgattaagaggcctatgcctgtaatttcactaagtcagtatttctgttaataagaccaaattaaaaaggctagtggctgtgtagcatcctcagtgcaaaacccagctccagaattttcacctggtaacgaatttcaactgacagtgaaatgaataggcctttaaactttataacattgcaattgtgatgttatctctaggtttttgtgtgaagtcattcaaaaactatttcattgtaaattaataaaaacaatccatttaacttgtgaagctgatttgattgaagaggaatccaaagcccataactaacatcaaaaatcaaactgcaattatgaattgagaaatatgaatagcatttgtttcacattgctagcacacatgtgacacaccca...
position 971
Synonym: dJ747H23.2; RWDD2
NM_001322335.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens RWD domain containing 2A (RWDD2A), transcript variant 5, mRNA. (3642 bp)
aagcgtggagacagaaggaaatggtgaggacctgcgccttttccattcttttgaagagttactccttgaggctcatggtgactatggattaaggaatgactatcacatgaatctgggccaattcttagaatttctcaagaagcacaaaagtgagcatgtttttcagatactatttggtattgaaagcaaaagttcagactcataaaaagcgattaagaggcctatgcctgtaatttcactaagtcagtatttctgttaataagaccaaattaaaaaggctagtggctgtgtagcatcctcagtgcaaaacccagctccagaattttcacctggtaacgaatttcaactgacagtgaaatgaataggcctttaaactttataacattgcaattgtgatgttatctctaggtttttgtgtgaagtcattcaaaaactatttcattgtaaattaataaaaacaatccatttaacttgtgaagctgatttgattgaagaggaatccaaagcccataactaacatcaaaaatcaaactgcaattatgaattgagaaatatgaatagcatttgtttcacattgctagcacacatgtgacacaccca...
position 1063
Synonym: dJ747H23.2; RWDD2
NM_001322339.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens RWD domain containing 2A (RWDD2A), transcript variant 1, mRNA. (3769 bp)
aagcgtggagacagaaggaaatggtgaggacctgcgccttttccattcttttgaagagttactccttgaggctcatggtgactatggattaaggaatgactatcacatgaatctgggccaattcttagaatttctcaagaagcacaaaagtgagcatgtttttcagatactatttggtattgaaagcaaaagttcagactcataaaaagcgattaagaggcctatgcctgtaatttcactaagtcagtatttctgttaataagaccaaattaaaaaggctagtggctgtgtagcatcctcagtgcaaaacccagctccagaattttcacctggtaacgaatttcaactgacagtgaaatgaataggcctttaaactttataacattgcaattgtgatgttatctctaggtttttgtgtgaagtcattcaaaaactatttcattgtaaattaataaaaacaatccatttaacttgtgaagctgatttgattgaagaggaatccaaagcccataactaacatcaaaaatcaaactgcaattatgaattgagaaatatgaatagcatttgtttcacattgctagcacacatgtgacacaccca...
position 1190
Synonym: dJ747H23.2; RWDD2
NM_033411.5 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens RWD domain containing 2A (RWDD2A), transcript variant 4, mRNA. (3846 bp)
aagcgtggagacagaaggaaatggtgaggacctgcgccttttccattcttttgaagagttactccttgaggctcatggtgactatggattaaggaatgactatcacatgaatctgggccaattcttagaatttctcaagaagcacaaaagtgagcatgtttttcagatactatttggtattgaaagcaaaagttcagactcataaaaagcgattaagaggcctatgcctgtaatttcactaagtcagtatttctgttaataagaccaaattaaaaaggctagtggctgtgtagcatcctcagtgcaaaacccagctccagaattttcacctggtaacgaatttcaactgacagtgaaatgaataggcctttaaactttataacattgcaattgtgatgttatctctaggtttttgtgtgaagtcattcaaaaactatttcattgtaaattaataaaaacaatccatttaacttgtgaagctgatttgattgaagaggaatccaaagcccataactaacatcaaaaatcaaactgcaattatgaattgagaaatatgaatagcatttgtttcacattgctagcacacatgtgacacaccca...
position 1267
Synonym: dJ747H23.2; RWDD2
NM_001322337.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens RWD domain containing 2A (RWDD2A), transcript variant 3, mRNA. (3861 bp)
aagcgtggagacagaaggaaatggtgaggacctgcgccttttccattcttttgaagagttactccttgaggctcatggtgactatggattaaggaatgactatcacatgaatctgggccaattcttagaatttctcaagaagcacaaaagtgagcatgtttttcagatactatttggtattgaaagcaaaagttcagactcataaaaagcgattaagaggcctatgcctgtaatttcactaagtcagtatttctgttaataagaccaaattaaaaaggctagtggctgtgtagcatcctcagtgcaaaacccagctccagaattttcacctggtaacgaatttcaactgacagtgaaatgaataggcctttaaactttataacattgcaattgtgatgttatctctaggtttttgtgtgaagtcattcaaaaactatttcattgtaaattaataaaaacaatccatttaacttgtgaagctgatttgattgaagaggaatccaaagcccataactaacatcaaaaatcaaactgcaattatgaattgagaaatatgaatagcatttgtttcacattgctagcacacatgtgacacaccca...
position 1282
Synonym: dJ747H23.2; RWDD2
NM_001322336.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
PREDICTED: Homo sapiens RWD domain containing 2A (RWDD2A), transcript variant X3, mRNA. (3627 bp)
aagcgtggagacagaaggaaatggtgaggacctgcgccttttccattcttttgaagagttactccttgaggctcatggtgactatggattaaggaatgactatcacatgaatctgggccaattcttagaatttctcaagaagcacaaaagtgagcatgtttttcagatactatttggtattgaaagcaaaagttcagactcataaaaagcgattaagaggcctatgcctgtaatttcactaagtcagtatttctgttaataagaccaaattaaaaaggctagtggctgtgtagcatcctcagtgcaaaacccagctccagaattttcacctggtaacgaatttcaactgacagtgaaatgaataggcctttaaactttataacattgcaattgtgatgttatctctaggtttttgtgtgaagtcattcaaaaactatttcattgtaaattaataaaaacaatccatttaacttgtgaagctgatttgattgaagaggaatccaaagcccataactaacatcaaaaatcaaactgcaattatgaattgagaaatatgaatagcatttgtttcacattgctagcacacatgtgacacaccca...
position 1048
Synonym: dJ747H23.2; RWDD2
XM_054354139.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
PREDICTED: Homo sapiens RWD domain containing 2A (RWDD2A), transcript variant X3, mRNA. (3627 bp)
aagcgtggagacagaaggaaatggtgaggacctgcgccttttccattcttttgaagagttactccttgaggctcatggtgactatggattaaggaatgactatcacatgaatctgggccaattcttagaatttctcaagaagcacaaaagtgagcatgtttttcagatactatttggtattgaaagcaaaagttcagactcataaaaagcgattaagaggcctatgcctgtaatttcactaagtcagtatttctgttaataagaccaaattaaaaaggctagtggctgtgtagcatcctcagtgcaaaacccagctccagaattttcacctggtaacgaatttcaactgacagtgaaatgaataggcctttaaactttataacattgcaattgtgatgttatctctaggtttttgtgtgaagtcattcaaaaactatttcattgtaaattaataaaaacaatccatttaacttgtgaagctgatttgattgaagaggaatccaaagcccataactaacatcaaaaatcaaactgcaattatgaattgagaaatatgaatagcatttgtttcacattgctagcacacatgtgacacaccca...
position 1048
Synonym: dJ747H23.2; RWDD2
XM_047418136.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
PREDICTED: Homo sapiens RWD domain containing 2A (RWDD2A), transcript variant X6, mRNA. (4056 bp)
aagcgtggagacagaaggaaatggtgaggacctgcgccttttccattcttttgaagagttactccttgaggctcatggtgactatggattaaggaatgactatcacatgaatctgggccaattcttagaatttctcaagaagcacaaaagtgagcatgtttttcagatactatttggtattgaaagcaaaagttcagactcataaaaagcgattaagaggcctatgcctgtaatttcactaagtcagtatttctgttaataagaccaaattaaaaaggctagtggctgtgtagcatcctcagtgcaaaacccagctccagaattttcacctggtaacgaatttcaactgacagtgaaatgaataggcctttaaactttataacattgcaattgtgatgttatctctaggtttttgtgtgaagtcattcaaaaactatttcattgtaaattaataaaaacaatccatttaacttgtgaagctgatttgattgaagaggaatccaaagcccataactaacatcaaaaatcaaactgcaattatgaattgagaaatatgaatagcatttgtttcacattgctagcacacatgtgacacaccca...
position 1477
Synonym: dJ747H23.2; RWDD2
XM_054354135.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
PREDICTED: Homo sapiens RWD domain containing 2A (RWDD2A), transcript variant X2, mRNA. (4169 bp)
aagcgtggagacagaaggaaatggtgaggacctgcgccttttccattcttttgaagagttactccttgaggctcatggtgactatggattaaggaatgactatcacatgaatctgggccaattcttagaatttctcaagaagcacaaaagtgagcatgtttttcagatactatttggtattgaaagcaaaagttcagactcataaaaagcgattaagaggcctatgcctgtaatttcactaagtcagtatttctgttaataagaccaaattaaaaaggctagtggctgtgtagcatcctcagtgcaaaacccagctccagaattttcacctggtaacgaatttcaactgacagtgaaatgaataggcctttaaactttataacattgcaattgtgatgttatctctaggtttttgtgtgaagtcattcaaaaactatttcattgtaaattaataaaaacaatccatttaacttgtgaagctgatttgattgaagaggaatccaaagcccataactaacatcaaaaatcaaactgcaattatgaattgagaaatatgaatagcatttgtttcacattgctagcacacatgtgacacaccca...
position 1590
Synonym: dJ747H23.2; RWDD2
XM_054354138.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
PREDICTED: Homo sapiens RWD domain containing 2A (RWDD2A), transcript variant X2, mRNA. (4169 bp)
aagcgtggagacagaaggaaatggtgaggacctgcgccttttccattcttttgaagagttactccttgaggctcatggtgactatggattaaggaatgactatcacatgaatctgggccaattcttagaatttctcaagaagcacaaaagtgagcatgtttttcagatactatttggtattgaaagcaaaagttcagactcataaaaagcgattaagaggcctatgcctgtaatttcactaagtcagtatttctgttaataagaccaaattaaaaaggctagtggctgtgtagcatcctcagtgcaaaacccagctccagaattttcacctggtaacgaatttcaactgacagtgaaatgaataggcctttaaactttataacattgcaattgtgatgttatctctaggtttttgtgtgaagtcattcaaaaactatttcattgtaaattaataaaaacaatccatttaacttgtgaagctgatttgattgaagaggaatccaaagcccataactaacatcaaaaatcaaactgcaattatgaattgagaaatatgaatagcatttgtttcacattgctagcacacatgtgacacaccca...
position 1590
Synonym: dJ747H23.2; RWDD2
XM_017010223.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
PREDICTED: Homo sapiens RWD domain containing 2A (RWDD2A), transcript variant X1, mRNA. (4388 bp)
aagcgtggagacagaaggaaatggtgaggacctgcgccttttccattcttttgaagagttactccttgaggctcatggtgactatggattaaggaatgactatcacatgaatctgggccaattcttagaatttctcaagaagcacaaaagtgagcatgtttttcagatactatttggtattgaaagcaaaagttcagactcataaaaagcgattaagaggcctatgcctgtaatttcactaagtcagtatttctgttaataagaccaaattaaaaaggctagtggctgtgtagcatcctcagtgcaaaacccagctccagaattttcacctggtaacgaatttcaactgacagtgaaatgaataggcctttaaactttataacattgcaattgtgatgttatctctaggtttttgtgtgaagtcattcaaaaactatttcattgtaaattaataaaaacaatccatttaacttgtgaagctgatttgattgaagaggaatccaaagcccataactaacatcaaaaatcaaactgcaattatgaattgagaaatatgaatagcatttgtttcacattgctagcacacatgtgacacaccca...
position 1809
Synonym: dJ747H23.2; RWDD2
XM_054354137.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
PREDICTED: Homo sapiens RWD domain containing 2A (RWDD2A), transcript variant X1, mRNA. (4388 bp)
aagcgtggagacagaaggaaatggtgaggacctgcgccttttccattcttttgaagagttactccttgaggctcatggtgactatggattaaggaatgactatcacatgaatctgggccaattcttagaatttctcaagaagcacaaaagtgagcatgtttttcagatactatttggtattgaaagcaaaagttcagactcataaaaagcgattaagaggcctatgcctgtaatttcactaagtcagtatttctgttaataagaccaaattaaaaaggctagtggctgtgtagcatcctcagtgcaaaacccagctccagaattttcacctggtaacgaatttcaactgacagtgaaatgaataggcctttaaactttataacattgcaattgtgatgttatctctaggtttttgtgtgaagtcattcaaaaactatttcattgtaaattaataaaaacaatccatttaacttgtgaagctgatttgattgaagaggaatccaaagcccataactaacatcaaaaatcaaactgcaattatgaattgagaaatatgaatagcatttgtttcacattgctagcacacatgtgacacaccca...
position 1809
Synonym: dJ747H23.2; RWDD2
XM_017010222.3 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
PREDICTED: Homo sapiens RWD domain containing 2A (RWDD2A), transcript variant X7, mRNA. (4554 bp)
aagcgtggagacagaaggaaatggtgaggacctgcgccttttccattcttttgaagagttactccttgaggctcatggtgactatggattaaggaatgactatcacatgaatctgggccaattcttagaatttctcaagaagcacaaaagtgagcatgtttttcagatactatttggtattgaaagcaaaagttcagactcataaaaagcgattaagaggcctatgcctgtaatttcactaagtcagtatttctgttaataagaccaaattaaaaaggctagtggctgtgtagcatcctcagtgcaaaacccagctccagaattttcacctggtaacgaatttcaactgacagtgaaatgaataggcctttaaactttataacattgcaattgtgatgttatctctaggtttttgtgtgaagtcattcaaaaactatttcattgtaaattaataaaaacaatccatttaacttgtgaagctgatttgattgaagaggaatccaaagcccataactaacatcaaaaatcaaactgcaattatgaattgagaaatatgaatagcatttgtttcacattgctagcacacatgtgacacaccca...
position 1975
Synonym: dJ747H23.2; RWDD2
XM_054354136.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
PREDICTED: Homo sapiens RWD domain containing 2A (RWDD2A), transcript variant X4, mRNA. (4637 bp)
aagcgtggagacagaaggaaatggtgaggacctgcgccttttccattcttttgaagagttactccttgaggctcatggtgactatggattaaggaatgactatcacatgaatctgggccaattcttagaatttctcaagaagcacaaaagtgagcatgtttttcagatactatttggtattgaaagcaaaagttcagactcataaaaagcgattaagaggcctatgcctgtaatttcactaagtcagtatttctgttaataagaccaaattaaaaaggctagtggctgtgtagcatcctcagtgcaaaacccagctccagaattttcacctggtaacgaatttcaactgacagtgaaatgaataggcctttaaactttataacattgcaattgtgatgttatctctaggtttttgtgtgaagtcattcaaaaactatttcattgtaaattaataaaaacaatccatttaacttgtgaagctgatttgattgaagaggaatccaaagcccataactaacatcaaaaatcaaactgcaattatgaattgagaaatatgaatagcatttgtttcacattgctagcacacatgtgacacaccca...
position 2058
Synonym: dJ747H23.2; RWDD2
XM_047418134.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
PREDICTED: Homo sapiens RWD domain containing 2A (RWDD2A), transcript variant X5, mRNA. (5256 bp)
aagcgtggagacagaaggaaatggtgaggacctgcgccttttccattcttttgaagagttactccttgaggctcatggtgactatggattaaggaatgactatcacatgaatctgggccaattcttagaatttctcaagaagcacaaaagtgagcatgtttttcagatactatttggtattgaaagcaaaagttcagactcataaaaagcgattaagaggcctatgcctgtaatttcactaagtcagtatttctgttaataagaccaaattaaaaaggctagtggctgtgtagcatcctcagtgcaaaacccagctccagaattttcacctggtaacgaatttcaactgacagtgaaatgaataggcctttaaactttataacattgcaattgtgatgttatctctaggtttttgtgtgaagtcattcaaaaactatttcattgtaaattaataaaaacaatccatttaacttgtgaagctgatttgattgaagaggaatccaaagcccataactaacatcaaaaatcaaactgcaattatgaattgagaaatatgaatagcatttgtttcacattgctagcacacatgtgacacaccca...
position 2677
Synonym: dJ747H23.2; RWDD2
XM_047418135.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)

Data Export:

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Debug Info:

Redirect URI : http://ggrna.dbcls.jp/hs/seq%3aTGTAGCATCCTCAGTGCAAAACCCA
lang : en | div : | spe : hs | query_string : seq:TGTAGCATCCTCAGTGCAAAACCCA | format : html | download :

0.000 | 0.000 | search_start;
0.091 | 0.091 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:TGTAGCATCCTCAGTGCAAAACCCA)?source=Homo sapiens (human)?to=0&format=json
0.224 | 0.133 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:TGTAGCATCCTCAGTGCAAAACCCA)?source=Homo sapiens (human)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.226 | 0.002 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]