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2024-04-26 02:27:14, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Homo sapiens ribosomal protein L13a pseudogene 6 (RPL13AP6), non-coding RNA. (653 bp)
Robilotto R, Cayting P and Gerstein M. TITLE Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes JOURNAL Genome Biol. 10 (1), R2 (2009) PUBMED 19123937 ctttcccaaggggcagccgaagatggcagaggtgcaggtcctggtgcttgatggtcgaggccatctcctgggccgcctggcgaccatcgtggctaaacaggtactgctgggccggaaggtggtggtcgtacgctgcaaaggcatcaacatttctggcaatttctacagaaacaagttgaagtacttggctttcctccgcaagcggatgaacaccaaccctttccgacgcccctaccacttccgggcccccagccccatcttctggctgactgtgcgaagtatgctgccccacaagaccaagcgaggccaggccgctctggaccgcctcaaggtgtttgactgcatcccaccgccttacgacaagaaaaagcggatggtggttcctgctgccctcaaggttgtgcgtctga...
position 96
Synonym: bA348N5.5; RPL13A_7_1096
NR_026715.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens ribosomal protein L13a pseudogene 5 (RPL13AP5), non-coding RNA. (658 bp)
Robilotto R, Cayting P and Gerstein M. TITLE Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes JOURNAL Genome Biol. 10 (1), R2 (2009) PUBMED 19123937 ctttcccaagcggctgccgaagatggcggaggtgcaggtcctggtgcttgatggtcgaggccatctcctgggccgcctggcggccatcgtggctaaacaggtactgctgggccggaaggtggtggttgtacgctgtgaaggcatcaacatttctggcaatttctacagaaacaagttgaagtacctggctttcctccgcaagcggatgaacaccaacccttcccgagtcccctaccacttccgggcccccagccgcatcttctggcggaccgtgcgaggtatgctgccccacaagaccaagcgaggccaggccgctctggaccgtctcaaggtgtttgacggcatcccaccgccctacgacaagaaaaagcggatggtggttcctgctgccctcaaggtcgtgcgtctga...
position 96
Synonym: bA196N24.2; RPL13A_8_1086
NR_026712.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens ribosomal protein L13a pseudogene 20 (RPL13AP20), non-coding RNA. (660 bp)
N, Robilotto R, Cayting P and Gerstein M. TITLE Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes JOURNAL Genome Biol 10 (1), R2 (2009) PUBMED 19123937 ctttcccaagcggctgccgaagatggcggaggtacaggtcctggtgcttgatggtcgaggccatctcctgggccacctggcggccatcgtggctaaacaggtactgctgggccggaaggtggtggttgtatgctgtgaaggcatcaacatttctggcaatttctacagaaacaagttgaagtacctggctttcctccgcaagcggatgaacagcaacccttcccgaggcccctaccccctccaggcccccagccgcatcttctggcagaccatgcgaggtatgccgccccacaagaccaagccaggccaggccgctctggactgcctcaaggtgtttgacggcatcccaccgccctacgacaagaaaaagcggatggtggttcctgctgccctcaaggttgtgcgtct...
position 96
Synonym: HANR; RPL13A_9_1211
NR_003932.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens ribosomal protein L13a (RPL13A), transcript variant 1, mRNA. (1127 bp)
MS, Bobak DA, Tsuchiya M, Moss J and Vaughan M. TITLE Conservation of a 23-kDa human transplantation antigen in mammalian species JOURNAL Genomics 14 (4), 959-964 (1992) PUBMED 1282492 cttttccaagcggctgccgaagatggcggaggtgcaggtcctggtgcttgatggtcgaggccatctcctgggccgcctggcggccatcgtggctaaacaggtactgctgggccggaaggtggtggtcgtacgctgtgaaggcatcaacatttctggcaatttctacagaaacaagttgaagtacctggctttcctccgcaagcggatgaacaccaacccttcccgaggcccctaccacttccgggcccccagccgcatcttctggcggaccgtgcgaggtatgctgccccacaaaaccaagcgaggccaggccgctctggaccgtctcaaggtgtttgacggcatcccaccgccctacgacaagaaaaagcggatggtggttcctgctgccctcaaggtcgtgcgtctgaagcct...
position 96
Synonym: L13A; TSTA1; uL13
NM_012423.4 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)

Data Export:

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Debug Info:

Redirect URI : http://ggrna.dbcls.jp/hs/seq%3aAACAGGTACTGCTGGGCCGGAAGGT
lang : en | div : | spe : hs | query_string : seq:AACAGGTACTGCTGGGCCGGAAGGT | format : html | download : 

0.000 | 0.000 | search_start;
0.086 | 0.086 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:AACAGGTACTGCTGGGCCGGAAGGT)?source=Homo sapiens (human)?to=0&format=json
0.109 | 0.024 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:AACAGGTACTGCTGGGCCGGAAGGT)?source=Homo sapiens (human)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.110 | 0.001 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]