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2024-04-17 02:59:19, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Homo sapiens small nuclear ribonucleoprotein polypeptide G (SNRPG), transcript variant X1, mRNA. (445 bp)
gene_synonym="Sm-G; SMG" /note="Sm1 motif; other site" /db_xref="CDD:212466" ORIGIN // gccagacgcaagacgccgggcctacagcgggagcgtgaggaaagccgtgcgttgcgttccaaggcatctgtgagcccgcggagtatacaccatgagcaaagctcaccctcccgagttgaaaaaatttatggacaagaagttatcattgaaattaaatggtggcagacatgtccaaggaatattgcggggatttgatccctttatgaaccttgtgatagatgaatgtgtggagatggcgactagtggacaacagaacaatattggaatggtggacaacatacctaataaagcggtaagcccaaagttcttgaaaaaggtgaaccaaaaaggacaacttacttttagcaaattattaagcataaagacctccaaggagtggtaagagttgctaattattagccttgatttattaaccttgatttttaagtttgagcagtaaagttga
position 194
Synonym: Sm-G; SMG
XM_054343520.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
PREDICTED: Homo sapiens small nuclear ribonucleoprotein polypeptide G (SNRPG), transcript variant X1, mRNA. (445 bp)
gene_synonym="Sm-G; SMG" /replace="a" /replace="g" /db_xref="dbSNP:1696963493" ORIGIN // gccagacgcaagacgccgggcctacagcgggagcgtgaggaaagccgtgcgttgcgttccaaggcatctgtgagcccgcggagtatacaccatgagcaaagctcaccctcccgagttgaaaaaatttatggacaagaagttatcattgaaattaaatggtggcagacatgtccaaggaatattgcggggatttgatccctttatgaaccttgtgatagatgaatgtgtggagatggcgactagtggacaacagaacaatattggaatggtggacaacatacctaataaagcggtaagcccaaagttcttgaaaaaggtgaaccaaaaaggacaacttacttttagcaaattattaagcataaagacctccaaggagtggtaagagttgctaattattagccttgatttattaaccttgatttttaagtttgagcagtaaagttga
position 194
Synonym: Sm-G; SMG
XM_017004774.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens small nuclear ribonucleoprotein polypeptide G (SNRPG), transcript variant 4, mRNA. (548 bp)
the Sm site (AAUUUGUGG) of U1 small nuclear ribonucleoprotein reconstituted in vitro JOURNAL J Mol Biol 227 (1), 15-28 (1992) PUBMED 1387914 ggaaggaagtgtttttaaaactacgtgaggcatcagaatccgaaagccactttagtcttagcaaatgtgtttatttatggacaagaagttatcattgaaattaaatggtggcagacatgtccaaggaatattgcggggatttgatccctttatgaaccttgtgatagatgaatgtgtggagatggcgactagtggacaacagaacaatattggaatggtggtaatacgaggaaatagtatcatcatgttagaagccttggaacgagtataaataatggctgttcagcagagaaacccatgtcctctctccatagggcctgttttactatgatgtaaaaattaggtcatgtacattttcatattagactttttgttaaataaacttttgtaatagtcaaaaatgctttctcagatgttctgaatatagaatatcagctctcattccagttttttctaaca...
position 143
Synonym: Sm-G; SMG
NM_001317167.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens small nuclear ribonucleoprotein polypeptide G (SNRPG), transcript variant 7, mRNA. (571 bp)
of U1 small nuclear ribonucleoprotein reconstituted in vitro JOURNAL J Mol Biol 227 (1), 15-28 (1992) PUBMED 1387914 gccagacgcaagacgccgggcctacagcgggagcgtgaggaaagccgtgcgttgcgttccaaggcatctgtgagcccgcggagtatacaccatgagcaaagctcaccctcccgagttgaaaaatgaaattaaatggtggcagacatgtccaaggaatattgcggggatttgatccctttatgaaccttgtgatagatgaatgtgtggagatggcgactagtggacaacagaacaatattggaatggtggtaatacgaggaaatagtatcatcatgttagaagccttggaacgagtataaataatggctgttcagcagagaaacccatgtcctctctccatagggcctgttttactatgatgtaaaaattaggtcatgtacattttcatattagactttttgttaaataaacttttgtaatagtcaaaaatgctttctcagatgttctgaatatagaatatcagctctcattccagttttttct...
position 171
Synonym: Sm-G; SMG
NM_001317171.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens small nuclear ribonucleoprotein polypeptide G (SNRPG), transcript variant 3, mRNA. (591 bp)
reconstituted in vitro JOURNAL J Mol Biol 227 (1), 15-28 (1992) PUBMED 1387914 gccagacgcaagacgccgggcctacagcgggagcgtgaggaaagccgtgcgttgcgttccaaggcatctgtgagcccgcggagtatacaccatgagcaaagctcaccctcccgagttgaaaaaatttatggacaagaagttatcattgaaattaaatggtggcagacatgtccaaggaatattgcggggatttgatccctttatgaaccttgtgatagatgaatgtgtggagatggcgactagtggacaacagaacaatattggaatggtaatacgaggaaatagtatcatcatgttagaagccttggaacgagtataaataatggctgttcagcagagaaacccatgtcctctctccatagggcctgttttactatgatgtaaaaattaggtcatgtacattttcatattagactttttgttaaataaacttttgtaatagtcaaaaatgctttctcagatgttctgaatatagaatatcagctctcattccagttttttctaacatgaattttcctggt...
position 194
Synonym: Sm-G; SMG
NM_001317166.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens small nuclear ribonucleoprotein polypeptide G (SNRPG), transcript variant 1, mRNA. (594 bp)
reconstituted in vitro JOURNAL J Mol Biol 227 (1), 15-28 (1992) PUBMED 1387914 gccagacgcaagacgccgggcctacagcgggagcgtgaggaaagccgtgcgttgcgttccaaggcatctgtgagcccgcggagtatacaccatgagcaaagctcaccctcccgagttgaaaaaatttatggacaagaagttatcattgaaattaaatggtggcagacatgtccaaggaatattgcggggatttgatccctttatgaaccttgtgatagatgaatgtgtggagatggcgactagtggacaacagaacaatattggaatggtggtaatacgaggaaatagtatcatcatgttagaagccttggaacgagtataaataatggctgttcagcagagaaacccatgtcctctctccatagggcctgttttactatgatgtaaaaattaggtcatgtacattttcatattagactttttgttaaataaacttttgtaatagtcaaaaatgctttctcagatgttctgaatatagaatatcagctctcattccagttttttctaacatgaattttcct...
position 194
Synonym: Sm-G; SMG
NM_003096.4 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens small nuclear ribonucleoprotein polypeptide G (SNRPG), transcript variant 6, mRNA. (657 bp)
PUBMED 1387914 gcagagctcgcgcgtcggtgtggttacagccggcagccacggcacctccttccggccgactagtctccaggtcccgcggtctggcccctggtcacccggcgctgtccctcgttccttgaagatctccagtgctaccttttgttgaacatctcgaatacaccaaaccttctagctgctaatactcagatttatggacaagaagttatcattgaaattaaatggtggcagacatgtccaaggaatattgcggggatttgatccctttatgaaccttgtgatagatgaatgtgtggagatggcgactagtggacaacagaacaatattggaatggtggtaatacgaggaaatagtatcatcatgttagaagccttggaacgagtataaataatggctgttcagcagagaaacccatgtcctctctccatagggcctgttttactatgatgtaaaaattaggtcatgtacattttcatattagactttttgttaaataaacttttgtaatagtcaaaaatgctttctcagatgttctgaatatagaatatcagctctcattccagttttttctaacatgaattttcctg...
position 257
Synonym: Sm-G; SMG
NM_001317169.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens small nuclear ribonucleoprotein polypeptide G (SNRPG), transcript variant 2, mRNA. (701 bp)
reconstituted in vitro JOURNAL J Mol Biol 227 (1), 15-28 (1992) PUBMED 1387914 gccagacgcaagacgccgggcctacagcgggagcgtgaggaaagccgtgcgttgcgttccaaggcatctgtgagcccgcggagtatacaccatgagcaaagctcaccctcccgagttgaaaaaatttatggacaagaagttatcattgaaattaaatggtggcagacatgtccaaggaatattgcggggatttgatccctttatgaaccttgtgatagatgaatgtgtggagatggcgactagtggacaacagaacaatattggaatggtggacaacatacctaataaagcggtaagcccaaagttcttgaaaaaggtgaaccaaaaaggacaacttacttttagcaaattattaagcataaagacctccaaggagtggtaatacgaggaaatagtatcatcatgttagaagccttggaacgagtataaataatggctgttcagcagagaaacccatgtcctctctccatagggcctgttttactatgatgtaaaaattaggtcatgtacattttcatatt...
position 194
Synonym: Sm-G; SMG
NM_001317165.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens small nuclear ribonucleoprotein polypeptide G (SNRPG), transcript variant 5, mRNA. (1260 bp)
cctcaaatactttttgagtggacttaacaggttatgtgtttcctgactacgtttctgttttgcttatacttcctgatgctggaattctacatgtattagttggattgcacaaaggatgcaaaatttttacagggatcagttttttctggcgtagcatgtggttggctttgtgtatagttagttcatttattaccaggcccatggaagtcagacaaaagatttatggacaagaagttatcattgaaattaaatggtggcagacatgtccaaggaatattgcggggatttgatccctttatgaaccttgtgatagatgaatgtgtggagatggcgactagtggacaacagaacaatattggaatggtggtaatacgaggaaatagtatcatcatgttagaagccttggaacgagtataaataatggctgttcagcagagaaacccatgtcctctctccatagggcctgttttactatgatgtaaaaattaggtcatgtacattttcatattagactttttgttaaataaacttttgtaatagtcaaaaatgctttctcagatgttctgaatatagaatatcagctctcattccagttttttc...
position 855
Synonym: Sm-G; SMG
NM_001317168.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)

Data Export:

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Debug Info:

Redirect URI : http://ggrna.dbcls.jp/hs/seq%3aGATCCCTTTATGAACCTTGTGATAG
lang : en | div : | spe : hs | query_string : seq:GATCCCTTTATGAACCTTGTGATAG | format : html | download : 

0.000 | 0.000 | search_start;
0.086 | 0.086 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:GATCCCTTTATGAACCTTGTGATAG)?source=Homo sapiens (human)?to=0&format=json
0.139 | 0.053 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:GATCCCTTTATGAACCTTGTGATAG)?source=Homo sapiens (human)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.141 | 0.001 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]