GGRNA ver.2 Help | Advanced search | Japanese    Previous release (v1)

2024-04-19 16:05:21, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Homo sapiens small nucleolar RNA, C/D box 141B (SNORD141B), small nucleolar RNA. (105 bp)
F, Butter F, Ule J, Hertel J, Stadler PF and Neugebauer KM. TITLE The coilin interactome identifies hundreds of small noncoding RNAs that traffic through Cajal bodies JOURNAL Mol. Cell 56 (3), 389-399 (2014) PUBMED 25514182 gtctgtcaaggatgttcgtcgtggcaacgttgctggtgacagcaaaaatgacccaccaatggaagcagctggcttcactgctcaggtgattatcctgaaccatcc
position 60
NR_132981.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens small nucleolar RNA, C/D box 141A (SNORD141A), small nucleolar RNA. (105 bp)
F, Butter F, Ule J, Hertel J, Stadler PF and Neugebauer KM. TITLE The coilin interactome identifies hundreds of small noncoding RNAs that traffic through Cajal bodies JOURNAL Mol. Cell 56 (3), 389-399 (2014) PUBMED 25514182 gtctgtcaaggatgttcgtcgtggcaacgttgctggtgacagcaaaaatgacccaccaatggaagcagctggcttcactgctcaggtgattatcctgaaccatcc
position 60
NR_132980.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
PREDICTED: Homo sapiens eukaryotic translation elongation factor 1 alpha 1 (EEF1A1), transcript variant X1, mRNA. (3581 bp)
ctcgtccaactgacaagcccttgcgcctgcctctccaggatgtctacaaaattggtggtattggtactgttcctgttggccgagtggagactggtgttctcaaacccggtatggtggtcacctttgctccagtcaacgttacaacggaagtaaaatctgtcgaaatgcaccatgaagctttgagtgaagctcttcctggggacaatgtgggcttcaatgtcaagaatgtgtctgtcaaggatgttcgtcgtggcaacgttgctggtgacagcaaaaatgacccaccaatggaagcagctggcttcactgctcaggtgattatcctgaaccatccaggccaaataagcgccggctatgcccctgtattggattgccacacggctcacattgcatgcaagtttgctgagctgaaggaaaagattgatcgccgttctggtaaaaagctggaagatggccctaaattcttgaagtctggtgatgctgccattgttgatatggttcctggcaagcccatgtgtgttgagagcttctcagactatccacctttgggtcgctttgctgttcgtgatatgagacagacagttgcggtgggtgtcatca...
position 1136
Synonym: CCS-3; CCS3; EE1A1; EEF-1; EEF1A; eEF1A-1; EF-Tu; EF1A; EF1A1; EF1alpha1; GRAF-1EF; LENG7; PTI1
XM_054354427.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens eukaryotic translation elongation factor 1 alpha 1 (EEF1A1), mRNA. (3512 bp)
ctcgtccaactgacaagcccttgcgcctgcctctccaggatgtctacaaaattggtggtattggtactgttcctgttggccgagtggagactggtgttctcaaacccggtatggtggtcacctttgctccagtcaacgttacaacggaagtaaaatctgtcgaaatgcaccatgaagctttgagtgaagctcttcctggggacaatgtgggcttcaatgtcaagaatgtgtctgtcaaggatgttcgtcgtggcaacgttgctggtgacagcaaaaatgacccaccaatggaagcagctggcttcactgctcaggtgattatcctgaaccatccaggccaaataagcgccggctatgcccctgtattggattgccacacggctcacattgcatgcaagtttgctgagctgaaggaaaagattgatcgccgttctggtaaaaagctggaagatggccctaaattcttgaagtctggtgatgctgccattgttgatatggttcctggcaagcccatgtgtgttgagagcttctcagactatccacctttgggtcgctttgctgttcgtgatatgagacagacagttgcggtgggtgtcatca...
position 1067
Synonym: CCS-3; CCS3; EE1A1; EEF-1; EEF1A; eEF1A-1; EF-Tu; EF1A; EF1A1; EF1alpha1; GRAF-1EF; LENG7; PTI1
NM_001402.6 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : http://ggrna.dbcls.jp/hs/seq%3aTGGAAGCAGCTGGCTTCACTGCTCA
lang : en | div : | spe : hs | query_string : seq:TGGAAGCAGCTGGCTTCACTGCTCA | format : html | download : 

0.000 | 0.000 | search_start;
0.086 | 0.086 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:TGGAAGCAGCTGGCTTCACTGCTCA)?source=Homo sapiens (human)?to=0&format=json
0.132 | 0.046 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:TGGAAGCAGCTGGCTTCACTGCTCA)?source=Homo sapiens (human)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.132 | 0.001 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]