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2021-01-17 00:36:43, GGRNA : RefSeq release 203 (Nov, 2020)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

Homo sapiens PPFIA binding protein 1 (PPFIBP1), transcript variant 3, mRNA. (5696 bp)
tgatttgatgctaataataattttctttaaactctaccattcattatgtggtaactgtattgaacttactttatttggattttattttaatgtgactagatgtcaccacttcaaaaaatcaatttgttcttagaacctggttgaaaataccaggaaactgttacagacgccattttttttttttttgagacggagtcttgctctgttgcccaggctggagtgcagtggcacaatctcagctcactgcaagctccgcctcctgggttcacgccattctcccacctcagcttcccaagcagctgggactacaggtacctgccaccacgcctggctaattttgtttttgtatttttagtagagacggggtttcaccgtgttagccaggaaggtctcaatctcctgacctcgtgaatcgcccccctcggtctcccaaagtgctgggattacaggcgtgagccaccatgcccggcccaaatattttttattcaggatggtataacctaactgataataggtaataaggttaaatttttttatgacgtattttatttacaaatatcatacactgctggtgttaccatatgaaaggaaataaagtca...
position 5109 5128 5173 5266 5362 5446 5463 5538 5569 5629 5642
Synonym: hSGT2; hSgt2p; L2; SGT2
NM_001198915.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens PPFIA binding protein 1 (PPFIBP1), transcript variant 4, mRNA. (5908 bp)
tgatttgatgctaataataattttctttaaactctaccattcattatgtggtaactgtattgaacttactttatttggattttattttaatgtgactagatgtcaccacttcaaaaaatcaatttgttcttagaacctggttgaaaataccaggaaactgttacagacgccattttttttttttttgagacggagtcttgctctgttgcccaggctggagtgcagtggcacaatctcagctcactgcaagctccgcctcctgggttcacgccattctcccacctcagcttcccaagcagctgggactacaggtacctgccaccacgcctggctaattttgtttttgtatttttagtagagacggggtttcaccgtgttagccaggaaggtctcaatctcctgacctcgtgaatcgcccccctcggtctcccaaagtgctgggattacaggcgtgagccaccatgcccggcccaaatattttttattcaggatggtataacctaactgataataggtaataaggttaaatttttttatgacgtattttatttacaaatatcatacactgctggtgttaccatatgaaaggaaataaagtca...
position 5321 5340 5385 5478 5574 5658 5675 5750 5781 5841 5854
Synonym: hSGT2; hSgt2p; L2; SGT2
NM_001198916.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens PPFIA binding protein 1 (PPFIBP1), transcript variant 1, mRNA. (5983 bp)
tgatttgatgctaataataattttctttaaactctaccattcattatgtggtaactgtattgaacttactttatttggattttattttaatgtgactagatgtcaccacttcaaaaaatcaatttgttcttagaacctggttgaaaataccaggaaactgttacagacgccattttttttttttttgagacggagtcttgctctgttgcccaggctggagtgcagtggcacaatctcagctcactgcaagctccgcctcctgggttcacgccattctcccacctcagcttcccaagcagctgggactacaggtacctgccaccacgcctggctaattttgtttttgtatttttagtagagacggggtttcaccgtgttagccaggaaggtctcaatctcctgacctcgtgaatcgcccccctcggtctcccaaagtgctgggattacaggcgtgagccaccatgcccggcccaaatattttttattcaggatggtataacctaactgataataggtaataaggttaaatttttttatgacgtattttatttacaaatatcatacactgctggtgttaccatatgaaaggaaataaagtca...
position 5396 5415 5460 5553 5649 5733 5750 5825 5856 5916 5929
Synonym: hSGT2; hSgt2p; L2; SGT2
NM_003622.4 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens PPFIA binding protein 1 (PPFIBP1), transcript variant 2, mRNA. (6001 bp)
tgatttgatgctaataataattttctttaaactctaccattcattatgtggtaactgtattgaacttactttatttggattttattttaatgtgactagatgtcaccacttcaaaaaatcaatttgttcttagaacctggttgaaaataccaggaaactgttacagacgccattttttttttttttgagacggagtcttgctctgttgcccaggctggagtgcagtggcacaatctcagctcactgcaagctccgcctcctgggttcacgccattctcccacctcagcttcccaagcagctgggactacaggtacctgccaccacgcctggctaattttgtttttgtatttttagtagagacggggtttcaccgtgttagccaggaaggtctcaatctcctgacctcgtgaatcgcccccctcggtctcccaaagtgctgggattacaggcgtgagccaccatgcccggcccaaatattttttattcaggatggtataacctaactgataataggtaataaggttaaatttttttatgacgtattttatttacaaatatcatacactgctggtgttaccatatgaaaggaaataaagtca...
position 5414 5433 5478 5571 5667 5751 5768 5843 5874 5934 5947
Synonym: hSGT2; hSgt2p; L2; SGT2
NM_177444.3 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
PREDICTED: Homo sapiens PPFIA binding protein 1 (PPFIBP1), transcript variant X1, mRNA. (6115 bp)
tgatttgatgctaataataattttctttaaactctaccattcattatgtggtaactgtattgaacttactttatttggattttattttaatgtgactagatgtcaccacttcaaaaaatcaatttgttcttagaacctggttgaaaataccaggaaactgttacagacgccattttttttttttttgagacggagtcttgctctgttgcccaggctggagtgcagtggcacaatctcagctcactgcaagctccgcctcctgggttcacgccattctcccacctcagcttcccaagcagctgggactacaggtacctgccaccacgcctggctaattttgtttttgtatttttagtagagacggggtttcaccgtgttagccaggaaggtctcaatctcctgacctcgtgaatcgcccccctcggtctcccaaagtgctgggattacaggcgtgagccaccatgcccggcccaaatattttttattcaggatggtataacctaactgataataggtaataaggttaaatttttttatgacgtattttatttacaaatatcatacactgctggtgttaccatatgaaaggaaataaagtca...
position 5528 5547 5592 5685 5781 5865 5882 5957 5988 6048 6061
Synonym: hSGT2; hSgt2p; L2; SGT2
XM_024449232.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)

Data Export:

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Debug Info:

Redirect URI : http://ggrna.dbcls.jp/hs/203735_x_at
lang : en | div : | spe : hs | query_string : 203735_x_at | format : html | download :

0.000 | 0.000 | search_start;
0.089 | 0.089 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:TTTACAAATATCATACACTGCTGGT)?source=Homo sapiens (human)?to=0&format=json
0.101 | 0.012 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:TGAGACGGAGTCTTGCTCTGTTGCC)?source=Homo sapiens (human)?to=0&format=json
0.111 | 0.010 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:TGACTAGATGTCACCACTTCAAAAA)?source=Homo sapiens (human)?to=0&format=json
0.121 | 0.010 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:TACACTGCTGGTGTTACCATATGAA)?source=Homo sapiens (human)?to=0&format=json
0.131 | 0.010 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:GTTTCACCGTGTTAGCCAGGAAGGT)?source=Homo sapiens (human)?to=0&format=json
0.143 | 0.012 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:GTGGTAACTGTATTGAACTTACTTT)?source=Homo sapiens (human)?to=0&format=json
0.152 | 0.010 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:GGATGGTATAACCTAACTGATAATA)?source=Homo sapiens (human)?to=0&format=json
0.163 | 0.011 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:CCTCAGCTTCCCAAGCAGCTGGGAC)?source=Homo sapiens (human)?to=0&format=json
0.173 | 0.010 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:CACCATGCCCGGCCCAAATATTTTT)?source=Homo sapiens (human)?to=0&format=json
0.182 | 0.009 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:AGGAAGGTCTCAATCTCCTGACCTC)?source=Homo sapiens (human)?to=0&format=json
0.192 | 0.010 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:AAACTCTACCATTCATTATGTGGTA)?source=Homo sapiens (human)?to=0&format=json
0.358 | 0.165 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=(nt:TTTACAAATATCATACACTGCTGGT)%26(nt:TGAGACGGAGTCTTGCTCTGTTGCC)%26(nt:TGACTAGATGTCACCACTTCAAAAA)%26(nt:TACACTGCTGGTGTTACCATATGAA)%26(nt:GTTTCACCGTGTTAGCCAGGAAGGT)%26(nt:GTGGTAACTGTATTGAACTTACTTT)%26(nt:GGATGGTATAACCTAACTGATAATA)%26(nt:CCTCAGCTTCCCAAGCAGCTGGGAC)%26(nt:CACCATGCCCGGCCCAAATATTTTT)%26(nt:AGGAAGGTCTCAATCTCCTGACCTC)%26(nt:AAACTCTACCATTCATTATGTGGTA)?source=Homo sapiens (human)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.361 | 0.003 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]