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2024-04-16 15:05:39, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Homo sapiens RAN binding protein 9 (RANBP9), transcript variant X4, mRNA. (2404 bp)
agttgtgtttgtgttagcatgtgggtgatgtaaacttcaaattgggagatgttccgacccccactcccatataagcattcaatcagtgtaacttgcaaaatgcataaacatccggacagtttgaatttatagtgttgatggaagaaatcatttttaatgtgtactgtaaaacttgaaatactcaggagctgagtgaatatgtttgttgctacttacaatcccgacctgttagtcccagtagttttgttttaacatggtctttttcaactttgtttcctgtttaactacagatgacttctgttgtagactcacaagtttaactgttgtattataacagtattacatgtcaacggtgtggttatgacctttatttatataaaaaccaaatatttagtcaatttaccgtgtcttaatttaatctttgtacaccttccatttttaagtgcttaaatgagtactatattgcaataaaatgtagtgatataattaaccagccattaaaaatttacttctacaga
position 2175
Synonym: BPM-L; BPM90; RanBP7; RANBPM
XM_054353974.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens RAN binding protein 9 (RANBP9), mRNA. (3384 bp)
dbSNP:1584902929" variation 3144..3148 /gene="RANBP9" /gene_synonym="BPM-L; BPM90; RanBP7; RANBPM" /replace="tgttt" /replace="tgtttgttt" /db_xref="dbSNP:529662988" variation 3145..3188 /gene="RANBP9" /gene_synonym="BPM-L; BPM90; RanBP7; RANBPM" /replace="gtttaact" /replace="gtttaactacagatgacttctgttgtagactcacaagtttaact" /db_xref="dbSNP:1764451393" variation 3145 /gene="RANBP9" /gene_synonym="BPM-L; BPM90; RanBP7; RANBPM" /replace="a" /replace="g" /db_xref="dbSNP:183346245" variation 3146 /gene="RANBP9" /gene_synonym="BPM-L; BPM90; RanBP7; RANBPM" /replace="a" /replace="t" /db_xref="dbSNP...
position 3155
Synonym: BPM-L; BPM90; RanBP7; RANBPM
NM_005493.3 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
PREDICTED: Homo sapiens RAN binding protein 9 (RANBP9), transcript variant X2, mRNA. (2501 bp)
dbSNP:1584902929" variation 2261..2265 /gene="RANBP9" /gene_synonym="BPM-L; BPM90; RanBP7; RANBPM" /replace="tgttt" /replace="tgtttgttt" /db_xref="dbSNP:529662988" variation 2262..2305 /gene="RANBP9" /gene_synonym="BPM-L; BPM90; RanBP7; RANBPM" /replace="gtttaact" /replace="gtttaactacagatgacttctgttgtagactcacaagtttaact" /db_xref="dbSNP:1764451393" variation 2262 /gene="RANBP9" /gene_synonym="BPM-L; BPM90; RanBP7; RANBPM" /replace="a" /replace="g" /db_xref="dbSNP:183346245" variation 2263 /gene="RANBP9" /gene_synonym="BPM-L; BPM90; RanBP7; RANBPM" /replace="a" /replace="t" /db_xref="dbSNP...
position 2272
Synonym: BPM-L; BPM90; RanBP7; RANBPM
XM_047418032.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
PREDICTED: Homo sapiens RAN binding protein 9 (RANBP9), transcript variant X2, mRNA. (2502 bp)
agttgtgtttgtgttagcatgtgggtgatgtaaacttcaaattgggagatgttccgacccccactcccatataagcattcaatcagtgtaacttgcaaaatgcataaacatccggacagtttgaatttatagtgttgatggaagaaatcatttttaatgtgtactgtaaaacttgaaatactcaggagctgagtgaatatgtttgttgctacttacaatcccgacctgttagtcccagtagttttgttttaacatggtctttttcaactttgtttcctgtttaactacagatgacttctgttgtagactcacaagtttaactgttgtattataacagtattacatgtcaacggtgtggttatgacctttatttatataaaaaccaaatatttagtcaatttaccgtgtcttaatttaatctttgtacaccttccatttttaagtgcttaaatgagtactatattgcaataaaatgtagtgatataattaaccagccattaaaaatttacttctacaga
position 2273
Synonym: BPM-L; BPM90; RanBP7; RANBPM
XM_054353975.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
PREDICTED: Homo sapiens RAN binding protein 9 (RANBP9), transcript variant X1, mRNA. (3114 bp)
dbSNP:1584902929" variation 2874..2878 /gene="RANBP9" /gene_synonym="BPM-L; BPM90; RanBP7; RANBPM" /replace="tgttt" /replace="tgtttgttt" /db_xref="dbSNP:529662988" variation 2875..2918 /gene="RANBP9" /gene_synonym="BPM-L; BPM90; RanBP7; RANBPM" /replace="gtttaact" /replace="gtttaactacagatgacttctgttgtagactcacaagtttaact" /db_xref="dbSNP:1764451393" variation 2875 /gene="RANBP9" /gene_synonym="BPM-L; BPM90; RanBP7; RANBPM" /replace="a" /replace="g" /db_xref="dbSNP:183346245" variation 2876 /gene="RANBP9" /gene_synonym="BPM-L; BPM90; RanBP7; RANBPM" /replace="a" /replace="t" /db_xref="dbSNP...
position 2885
Synonym: BPM-L; BPM90; RanBP7; RANBPM
XM_011514205.3 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
PREDICTED: Homo sapiens RAN binding protein 9 (RANBP9), transcript variant X1, mRNA. (3115 bp)
agttgtgtttgtgttagcatgtgggtgatgtaaacttcaaattgggagatgttccgacccccactcccatataagcattcaatcagtgtaacttgcaaaatgcataaacatccggacagtttgaatttatagtgttgatggaagaaatcatttttaatgtgtactgtaaaacttgaaatactcaggagctgagtgaatatgtttgttgctacttacaatcccgacctgttagtcccagtagttttgttttaacatggtctttttcaactttgtttcctgtttaactacagatgacttctgttgtagactcacaagtttaactgttgtattataacagtattacatgtcaacggtgtggttatgacctttatttatataaaaaccaaatatttagtcaatttaccgtgtcttaatttaatctttgtacaccttccatttttaagtgcttaaatgagtactatattgcaataaaatgtagtgatataattaaccagccattaaaaatttacttctacaga
position 2886
Synonym: BPM-L; BPM90; RanBP7; RANBPM
XM_054353973.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
PREDICTED: Homo sapiens RAN binding protein 9 (RANBP9), transcript variant X3, mRNA. (4577 bp)
dbSNP:1584902929" variation 4337..4341 /gene="RANBP9" /gene_synonym="BPM-L; BPM90; RanBP7; RANBPM" /replace="tgttt" /replace="tgtttgttt" /db_xref="dbSNP:529662988" variation 4338..4381 /gene="RANBP9" /gene_synonym="BPM-L; BPM90; RanBP7; RANBPM" /replace="gtttaact" /replace="gtttaactacagatgacttctgttgtagactcacaagtttaact" /db_xref="dbSNP:1764451393" variation 4338 /gene="RANBP9" /gene_synonym="BPM-L; BPM90; RanBP7; RANBPM" /replace="a" /replace="g" /db_xref="dbSNP:183346245" variation 4339 /gene="RANBP9" /gene_synonym="BPM-L; BPM90; RanBP7; RANBPM" /replace="a" /replace="t" /db_xref="dbSNP...
position 4348
Synonym: BPM-L; BPM90; RanBP7; RANBPM
XM_017010149.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)

Data Export:

Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.

Debug Info:

Redirect URI : http://ggrna.dbcls.jp/hs/seq%3aAGATGACTTCTGTTGTAGACTCACA
lang : en | div : | spe : hs | query_string : seq:AGATGACTTCTGTTGTAGACTCACA | format : html | download : 

0.000 | 0.000 | search_start;
0.085 | 0.085 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:AGATGACTTCTGTTGTAGACTCACA)?source=Homo sapiens (human)?to=0&format=json
0.161 | 0.076 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:AGATGACTTCTGTTGTAGACTCACA)?source=Homo sapiens (human)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.162 | 0.001 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]