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2024-04-24 17:28:59, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Homo sapiens ATP synthase-coupling factor 6, mitochondrial-like (LOC101928296), misc_RNA. (387 bp)
GeneID:101928296" misc_RNA 1..387 /gene="LOC101928296" /product="ATP synthase-coupling factor 6, mitochondrial-like" /pseudo /db_xref="GeneID:101928296" ORIGIN // atgttgagagaagcctggaaacctggatgggacagcaagagtaaaggccaaagaatcagccagattctccagaggctcttcaggttctcctctgtctttcagtcagcagtctcagtccatttgcggaggaacattggtgttacagcagtggcgtttaataaggaacttgatcctgtacagaaactctttatgtacaaggttagagaatacaaatctaagtgacagacatctggaggatctgttgatactgatccagagtaccagcaagagccagagaagaagctttttaagctcaagcaagtgtatggtaaagcagacatgaatacattccctaacttcaaatttgaagatcccaaacttgaagtcatcaaaaaaccccaggcctga
position 122
XR_007079529.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
PREDICTED: Homo sapiens ATP synthase-coupling factor 6, mitochondrial-like (LOC101928296), misc_RNA. (481 bp)
replace="c" /replace="t" /db_xref="dbSNP:1200229094" variation 476 /gene="LOC101928296" /replace="a" /replace="g" /db_xref="dbSNP:1819442722" ORIGIN // atgttgagagaagcctggaaacctggatgggacagcaagagtaaaggccaaagaatcagccagattctccagaggctcttcaggttctcctctgtctttcagtcagcagtctcagtccatttgcggaggaacattggtgttacagcagtggcgtttaataaggaacttgatcctgtacagaaactctttatgtacaaggttagagaatacaaatctaagtgacagacatctggaggatctgttgatactgatccagagtaccagcaagagccagagaagaagctttttaagctcaagcaagtgtatggtaaagcagacatgaatacattccctaacttcaaatttgaagatcccaaacttgaagtcatcaaaaaaccccaggcctgaagaaataaagtaaaattaacctggtaagttgtcaagggttagctgtacaactagctagaag...
position 122
XR_007060780.1 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens ATP synthase peripheral stalk subunit F6 (ATP5PF), transcript variant 1, mRNA; nuclear gene for mitochondrial product. (526 bp)
oxidative phosphorylation based on a molecular explanation of the oxygen exchange reactions JOURNAL Proc Natl Acad Sci U S A 70 (10), 2837-2839 (1973) PUBMED 4517936 agagcggaggtggtggcggcggaggctttggcagctcgggactgagtgcaagaatcagcatgattcttcagaggctcttcaggttctcctctgtcattcggtcagccgtctcagtccatttgcggaggaacattggtgttacagcagtggcatttaataaggaacttgatcctatacagaaactctttgtggacaagattagagaatacaaatctaagcgacagacatctggaggacctgttgatgctagttcagagtatcagcaagagctggagagggagctttttaagctcaagcaaatgtttggtaatgcagacatgaatacatttcccaccttcaaatttgaagatcccaaatttgaagtcatcgaaaaaccccaggcctgaagaaataaagtaaaattaatctggtaatttgtcacggattagttgtac...
position 121
Synonym: ATP5; ATP5A; ATP5J; ATPM; CF6; F6
NM_001003703.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens ATP synthase peripheral stalk subunit F6 (ATP5PF), transcript variant 2, mRNA; nuclear gene for mitochondrial product. (540 bp)
based on a molecular explanation of the oxygen exchange reactions JOURNAL Proc Natl Acad Sci U S A 70 (10), 2837-2839 (1973) PUBMED 4517936 ctgtttggcttctgtctcacctagacccgtccggtcgcagactgtctccgagacgcttcctgtccgaatcagcatgattcttcagaggctcttcaggttctcctctgtcattcggtcagccgtctcagtccatttgcggaggaacattggtgttacagcagtggcatttaataaggaacttgatcctatacagaaactctttgtggacaagattagagaatacaaatctaagcgacagacatctggaggacctgttgatgctagttcagagtatcagcaagagctggagagggagctttttaagctcaagcaaatgtttggtaatgcagacatgaatacatttcccaccttcaaatttgaagatcccaaatttgaagtcatcgaaaaaccccaggcctgaagaaataaagtaaaattaatctggtaatttgtcacggattagttgtacaactagttagaa...
position 135
Synonym: ATP5; ATP5A; ATP5J; ATPM; CF6; F6
NM_001685.5 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens ATP synthase peripheral stalk subunit F6 (ATP5PF), transcript variant 6, mRNA; nuclear gene for mitochondrial product. (569 bp)
explanation of the oxygen exchange reactions JOURNAL Proc Natl Acad Sci U S A 70 (10), 2837-2839 (1973) PUBMED 4517936 agagcggaggtggtggcggcggaggctttggcagctcgggactgagtgcaaggaatatgcactgaagaggcagcgaacctactaacctttggccgaatcagcatgattcttcagaggctcttcaggttctcctctgtcattcggtcagccgtctcagtccatttgcggaggaacattggtgttacagcagtggcatttaataaggaacttgatcctatacagaaactctttgtggacaagattagagaatacaaatctaagcgacagacatctggaggacctgttgatgctagttcagagtatcagcaagagctggagagggagctttttaagctcaagcaaatgtttggtaatgcagacatgaatacatttcccaccttcaaatttgaagatcccaaatttgaagtcatcgaaaaaccccaggcctgaagaaataaagtaaaattaatctggtaatttgtcacggattagttgtacaact...
position 164
Synonym: ATP5; ATP5A; ATP5J; ATPM; CF6; F6
NM_001320266.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens ATP synthase peripheral stalk subunit F6 (ATP5PF), transcript variant 5, mRNA; nuclear gene for mitochondrial product. (590 bp)
oxygen exchange reactions JOURNAL Proc Natl Acad Sci U S A 70 (10), 2837-2839 (1973) PUBMED 4517936 ctgtttggcttctgtctcacctagacccgtccggtcgcagactgtctccgagacgcttcctgtccggtgagcgtcgaccgactgaaacggcggcccataatgcattgcgatggcggaatcagcatgattcttcagaggctcttcaggttctcctctgtcattcggtcagccgtctcagtccatttgcggaggaacattggtgttacagcagtggcatttaataaggaacttgatcctatacagaaactctttgtggacaagattagagaatacaaatctaagcgacagacatctggaggacctgttgatgctagttcagagtatcagcaagagctggagagggagctttttaagctcaagcaaatgtttggtaatgcagacatgaatacatttcccaccttcaaatttgaagatcccaaatttgaagtcatcgaaaaaccccaggcctgaagaaataaagtaaaattaatctggtaatttgtcacggattagttgtacaa...
position 185
Synonym: ATP5; ATP5A; ATP5J; ATPM; CF6; F6
NM_001003701.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens ATP synthase peripheral stalk subunit F6 (ATP5PF), transcript variant 4, mRNA; nuclear gene for mitochondrial product. (641 bp)
Sci U S A 70 (10), 2837-2839 (1973) PUBMED 4517936 gtgggggaaaaggccccggaacgaggccggcccgcgagggcccgcgctcccctcctccccggcggccgcactcacccactccggaatcggccctgtcgcccccgcccgcactccagagccggctgagaacggcagcggcgagggctccacgtgcagcgtctctccggaatcagcatgattcttcagaggctcttcaggttctcctctgtcattcggtcagccgtctcagtccatttgcggaggaacattggtgttacagcagtggcatttaataaggaacttgatcctatacagaaactctttgtggacaagattagagaatacaaatctaagcgacagacatctggaggacctgttgatgctagttcagagtatcagcaagagctggagagggagctttttaagctcaagcaaatgtttggtaatgcagacatgaatacatttcccaccttcaaatttgaagatcccaaatttgaagtcatcgaaaaaccccaggcctgaagaaataaagtaaaattaatctggtaatttgtcacggattagttgtac...
position 236
Synonym: ATP5; ATP5A; ATP5J; ATPM; CF6; F6
NM_001003697.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens ATP synthase peripheral stalk subunit F6 (ATP5PF), transcript variant 3, mRNA; nuclear gene for mitochondrial product. (813 bp)
cggctgagaacggcagcggcgagggctccacgtgcagcgtctctccgggtaagacctgcagctcccgcgactagaagtgtgaggtcccagggcccttcccgcggaatcggcgctgagaagccccaacccccctcccgcctcccaggcaccttcgggtccaggactacaactcccggcagggtgcgcaaaacgaccgcccaaggcaacggaggctcacgagaatcagcatgattcttcagaggctcttcaggttctcctctgtcattcggtcagccgtctcagtccatttgcggaggaacattggtgttacagcagtggcatttaataaggaacttgatcctatacagaaactctttgtggacaagattagagaatacaaatctaagcgacagacatctggaggacctgttgatgctagttcagagtatcagcaagagctggagagggagctttttaagctcaagcaaatgtttggtaatgcagacatgaatacatttcccaccttcaaatttgaagatcccaaatttgaagtcatcgaaaaaccccaggcctgaagaaataaagtaaaattaatctggtaatttgtcacggattagttgt...
position 408
Synonym: ATP5; ATP5A; ATP5J; ATPM; CF6; F6
NM_001003696.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)
Homo sapiens ATP synthase peripheral stalk subunit F6 (ATP5PF), transcript variant 7, mRNA; nuclear gene for mitochondrial product. (1046 bp)
gcgggagagattttcggccaggcctacccgccccgggcgcacgggagcgtctaggctacttaggcagaacgtgtaccattaagagggaaaaaattagtcataatattgaaagtttgcatcccacctaaaaacgatggtgctaacacttcattaggcgactttatggattgttcataggaatatgcactgaagaggcagcgaacctactaacctttggccgaatcagcatgattcttcagaggctcttcaggttctcctctgtcattcggtcagccgtctcagtccatttgcggaggaacattggtgttacagcagtggcatttaataaggaacttgatcctatacagaaactctttgtggacaagattagagaatacaaatctaagcgacagacatctggaggacctgttgatgctagttcagagtatcagcaagagctggagagggagctttttaagctcaagcaaatgtttggtaatgcagacatgaatacatttcccaccttcaaatttgaagatcccaaatttgaagtcatcgaaaaaccccaggcctgaagaaataaagtaaaattaatctggtaatttgtcacggattagttgt...
position 641
Synonym: ATP5; ATP5A; ATP5J; ATPM; CF6; F6
NM_001320267.2 - Homo sapiens (human) - NCBI - UCSC - RefEx(expression)

Data Export:

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Debug Info:

Redirect URI : http://ggrna.dbcls.jp/hs/seq%3aTGCGGAGGAACATTGGTGTTACAGC
lang : en | div : | spe : hs | query_string : seq:TGCGGAGGAACATTGGTGTTACAGC | format : html | download :

0.000 | 0.000 | search_start;
0.084 | 0.084 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:TGCGGAGGAACATTGGTGTTACAGC)?source=Homo sapiens (human)?to=0&format=json
0.135 | 0.051 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:TGCGGAGGAACATTGGTGTTACAGC)?source=Homo sapiens (human)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.136 | 0.001 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]