GGRNA ver.2 Help | Advanced search | Japanese    Previous release (v1)

2024-05-01 12:24:51, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Gallus gallus uncharacterized LOC121109953 (LOC121109953), ncRNA. (1209 bp)
by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="CGNC:89819" /db_xref="GeneID:121109953" ncRNA 1..1209 /ncRNA_class="lncRNA" /gene="LOC121109953" /product="uncharacterized LOC121109953" /db_xref="GeneID:121109953" /db_xref="CGNC:89819" ORIGIN // aggtcataatgacctccattcctgttggacatcctgctatttgtgggttagacttggacttcggccacatttaatagcccctcctggatcaccccccttagacaaggtcagcctgagcctgctttgggcataccctggggaagatatggattcctgcaatgttttggactgtgagtacatcaggatgaagagtctgtgttggtgtttgtggtgtacaggcttctgattcaggtattcctgctgtgttacacaatagctgtctcatgcagcaagcactagagaactacagcagatgaagtgcttggtgacatg...
position 1
XR_005857750.2 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus uncharacterized LOC121109953 (LOC121109953), ncRNA. (1211 bp)
by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="CGNC:89819" /db_xref="GeneID:121109953" ncRNA 1..1211 /ncRNA_class="lncRNA" /gene="LOC121109953" /product="uncharacterized LOC121109953" /db_xref="GeneID:121109953" /db_xref="CGNC:89819" ORIGIN // aggtcataatgacctccattcctgttggacatcctgctatttgtgggttagacttggacttcggccacatttaatagcctctcctggatcactccccccttagacaaggtcagcctgagcctgctttgggcataccctggggaagatatggattcctgcaatgttttggactgtgagtacatcaggatgaagagtctgtgttggtgtttgtggtgtacaggcttctgattcaggtattcctgctgtgttacacaatagctgtctcatgcagcaagcactagagaactacagcagatgaagtgcttggtgaca...
position 1
XR_005847094.1 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus solute carrier family 25 member 47 (SLC25A47), transcript variant X7, mRNA. (4304 bp)
caaaggccagccagcagaatgaagacaccatatagctttctgcagagacaatttctttcagaaacaaacttgctggccttgaataaagaaaactttccttagaaggcacattcagcttcatgtcactgataggtcctgttttttgttcaagaatatccaggtacgtttcagtgtgcctctttgtgactggcagagtaatgtgaagctattcacaatccgtgttccttggcaactgcaatggtggagtcacatttaagtgttttttgtcagacctatggaaatgttgctctaataggtcacattgacctctctctatttctgagctggttgctgcacaaggaaattcaacgtccagtgttgcaacctgttaatcttcagaggactgaccctcattaccttgctctggcagcaatatggagtttacttgttaagaccagataaatggggttataaggcactctgtttcaccgtttgaaaggcactggacatcaaaacaatgatcaactccttgtgatgactgaacaatagagaaagtgtaaatgaagccttttaaaagttaaataaatcaaaaaaaaacaaaacaaaacaa
position 4009
XM_040672211.2 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus solute carrier family 25 member 47 (SLC25A47), transcript variant X2, mRNA. (4312 bp)
caaaggccagccagcagaatgaagacaccatatagctttctgcagagacaatttctttcagaaacaaacttgctggccttgaataaagaaaactttccttagaaggcacattcagcttcatgtcactgataggtcctgttttttgttcaagaatatccaggtacgtttcagtgtgcctctttgtgactggcagagtaatgtgaagctattcacaatccgtgttccttggcaactgcaatggtggagtcacatttaagtgttttttgtcagacctatggaaatgttgctctaataggtcacattgacctctctctatttctgagctggttgctgcacaaggaaattcaacgtccagtgttgcaacctgttaatcttcagaggactgaccctcattaccttgctctggcagcaatatggagtttacttgttaagaccagataaatggggttataaggcactctgtttcaccgtttgaaaggcactggacatcaaaacaatgatcaactccttgtgatgactgaacaatagagaaagtgtaaatgaagccttttaaaagttaaataaatcaaaaaaaaacaaaacaaaacaa
position 4017
XM_040672206.2 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus solute carrier family 25 member 47 (SLC25A47), transcript variant X6, mRNA. (4340 bp)
caaaggccagccagcagaatgaagacaccatatagctttctgcagagacaatttctttcagaaacaaacttgctggccttgaataaagaaaactttccttagaaggcacattcagcttcatgtcactgataggtcctgttttttgttcaagaatatccaggtacgtttcagtgtgcctctttgtgactggcagagtaatgtgaagctattcacaatccgtgttccttggcaactgcaatggtggagtcacatttaagtgttttttgtcagacctatggaaatgttgctctaataggtcacattgacctctctctatttctgagctggttgctgcacaaggaaattcaacgtccagtgttgcaacctgttaatcttcagaggactgaccctcattaccttgctctggcagcaatatggagtttacttgttaagaccagataaatggggttataaggcactctgtttcaccgtttgaaaggcactggacatcaaaacaatgatcaactccttgtgatgactgaacaatagagaaagtgtaaatgaagccttttaaaagttaaataaatcaaaaaaaaacaaaacaaaacaa
position 4045
XM_040672210.2 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus solute carrier family 25 member 47 (SLC25A47), transcript variant X10, mRNA. (4355 bp)
caaaggccagccagcagaatgaagacaccatatagctttctgcagagacaatttctttcagaaacaaacttgctggccttgaataaagaaaactttccttagaaggcacattcagcttcatgtcactgataggtcctgttttttgttcaagaatatccaggtacgtttcagtgtgcctctttgtgactggcagagtaatgtgaagctattcacaatccgtgttccttggcaactgcaatggtggagtcacatttaagtgttttttgtcagacctatggaaatgttgctctaataggtcacattgacctctctctatttctgagctggttgctgcacaaggaaattcaacgtccagtgttgcaacctgttaatcttcagaggactgaccctcattaccttgctctggcagcaatatggagtttacttgttaagaccagataaatggggttataaggcactctgtttcaccgtttgaaaggcactggacatcaaaacaatgatcaactccttgtgatgactgaacaatagagaaagtgtaaatgaagccttttaaaagttaaataaatcaaaaaaaaacaaaacaaaacaa
position 4060
XM_040672213.2 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus solute carrier family 25 member 47 (SLC25A47), transcript variant X5, mRNA. (4376 bp)
caaaggccagccagcagaatgaagacaccatatagctttctgcagagacaatttctttcagaaacaaacttgctggccttgaataaagaaaactttccttagaaggcacattcagcttcatgtcactgataggtcctgttttttgttcaagaatatccaggtacgtttcagtgtgcctctttgtgactggcagagtaatgtgaagctattcacaatccgtgttccttggcaactgcaatggtggagtcacatttaagtgttttttgtcagacctatggaaatgttgctctaataggtcacattgacctctctctatttctgagctggttgctgcacaaggaaattcaacgtccagtgttgcaacctgttaatcttcagaggactgaccctcattaccttgctctggcagcaatatggagtttacttgttaagaccagataaatggggttataaggcactctgtttcaccgtttgaaaggcactggacatcaaaacaatgatcaactccttgtgatgactgaacaatagagaaagtgtaaatgaagccttttaaaagttaaataaatcaaaaaaaaacaaaacaaaacaa
position 4081
XM_040672209.2 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus solute carrier family 25 member 47 (SLC25A47), transcript variant X3, mRNA. (4377 bp)
caaaggccagccagcagaatgaagacaccatatagctttctgcagagacaatttctttcagaaacaaacttgctggccttgaataaagaaaactttccttagaaggcacattcagcttcatgtcactgataggtcctgttttttgttcaagaatatccaggtacgtttcagtgtgcctctttgtgactggcagagtaatgtgaagctattcacaatccgtgttccttggcaactgcaatggtggagtcacatttaagtgttttttgtcagacctatggaaatgttgctctaataggtcacattgacctctctctatttctgagctggttgctgcacaaggaaattcaacgtccagtgttgcaacctgttaatcttcagaggactgaccctcattaccttgctctggcagcaatatggagtttacttgttaagaccagataaatggggttataaggcactctgtttcaccgtttgaaaggcactggacatcaaaacaatgatcaactccttgtgatgactgaacaatagagaaagtgtaaatgaagccttttaaaagttaaataaatcaaaaaaaaacaaaacaaaacaa
position 4082
XM_040672207.2 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus solute carrier family 25 member 47 (SLC25A47), transcript variant X9, mRNA. (4382 bp)
caaaggccagccagcagaatgaagacaccatatagctttctgcagagacaatttctttcagaaacaaacttgctggccttgaataaagaaaactttccttagaaggcacattcagcttcatgtcactgataggtcctgttttttgttcaagaatatccaggtacgtttcagtgtgcctctttgtgactggcagagtaatgtgaagctattcacaatccgtgttccttggcaactgcaatggtggagtcacatttaagtgttttttgtcagacctatggaaatgttgctctaataggtcacattgacctctctctatttctgagctggttgctgcacaaggaaattcaacgtccagtgttgcaacctgttaatcttcagaggactgaccctcattaccttgctctggcagcaatatggagtttacttgttaagaccagataaatggggttataaggcactctgtttcaccgtttgaaaggcactggacatcaaaacaatgatcaactccttgtgatgactgaacaatagagaaagtgtaaatgaagccttttaaaagttaaataaatcaaaaaaaaacaaaacaaaacaa
position 4087
XM_046918991.1 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus solute carrier family 25 member 47 (SLC25A47), transcript variant X4, mRNA. (4482 bp)
caaaggccagccagcagaatgaagacaccatatagctttctgcagagacaatttctttcagaaacaaacttgctggccttgaataaagaaaactttccttagaaggcacattcagcttcatgtcactgataggtcctgttttttgttcaagaatatccaggtacgtttcagtgtgcctctttgtgactggcagagtaatgtgaagctattcacaatccgtgttccttggcaactgcaatggtggagtcacatttaagtgttttttgtcagacctatggaaatgttgctctaataggtcacattgacctctctctatttctgagctggttgctgcacaaggaaattcaacgtccagtgttgcaacctgttaatcttcagaggactgaccctcattaccttgctctggcagcaatatggagtttacttgttaagaccagataaatggggttataaggcactctgtttcaccgtttgaaaggcactggacatcaaaacaatgatcaactccttgtgatgactgaacaatagagaaagtgtaaatgaagccttttaaaagttaaataaatcaaaaaaaaacaaaacaaaacaa
position 4187
XM_040672208.2 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus solute carrier family 25 member 47 (SLC25A47), transcript variant X8, mRNA. (6407 bp)
caaaggccagccagcagaatgaagacaccatatagctttctgcagagacaatttctttcagaaacaaacttgctggccttgaataaagaaaactttccttagaaggcacattcagcttcatgtcactgataggtcctgttttttgttcaagaatatccaggtacgtttcagtgtgcctctttgtgactggcagagtaatgtgaagctattcacaatccgtgttccttggcaactgcaatggtggagtcacatttaagtgttttttgtcagacctatggaaatgttgctctaataggtcacattgacctctctctatttctgagctggttgctgcacaaggaaattcaacgtccagtgttgcaacctgttaatcttcagaggactgaccctcattaccttgctctggcagcaatatggagtttacttgttaagaccagataaatggggttataaggcactctgtttcaccgtttgaaaggcactggacatcaaaacaatgatcaactccttgtgatgactgaacaatagagaaagtgtaaatgaagccttttaaaagttaaataaatcaaaaaaaaacaaaacaaaacaa
position 6112
XM_040672212.2 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus uncharacterized LOC107054642 (LOC107054642), transcript variant X3, ncRNA. (8202 bp)
ctgtccatgactctcttgcatagacagaggagatgcaatctggcttcaacactgctgcacagtgtgcagagctctctggagctcagcagcatcagggagttgctgcaggttgaggagaaaggactgactacccaaacatcaacaggaggaaactatggtgccaacttattctagggcttcccaaggatgaggtagaaatctgtgacgccatctgtgcaagccctggcaaatgcattccatcctaagcatgctggctctgcacaggttcacttgtctcactggacttccttagaaggtcataatgacctacaggtctaggtatcagcaactgaaagcactgaaatttgtgtttttctccagttaatattacttaattgtgcagatacgtgtgtatttgtaatttagcagggatcttcagactgaaccagccagagagtagaagacatatctggaaatacccacggtctgagctggtgcctggggagaagtgggcagtttatcactggtgaccttgacacttgctcagatggagaggaagaggagctgttggggtgctgctacaggcaaagctctctgcattggtctgtgtggccagcagta...
position 7501
XR_005854039.2 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus uncharacterized LOC101747852 (LOC101747852), transcript variant X2, ncRNA. (11360 bp)
tgcttgcttctgttgagcaggcttgccctcctggtggcatcgtgacctgcatttgaacttctcagaaacagcagcatttgtcttcctctaaaacctctcagagatgaaacacaagaaacatttcacttgtcaagactgtttactacctgttgaagtaaatgtaaatttgatgtttctctaagaaggagctgatggctttactctgtgctaacgtatccgtagatgtcttggcatttgattttgctattttgatactagaagcaattttcctatgatttagtgtcaaagctataaggtcatcttgacctgtttagaacatttctaaatagacttaaaaataagaggcaatggcatgaaaagaaactgaacttttcggaggtatctcaccacaggtacctgtaaatacttctctgtacctacagtgtttccaaataattttattattattatttcagcagaggctgtccctaatgaatgtatagtttcaacaagtaaaactgaagcacatatgatgtaaaagagagaaactgaatggcagttaccgatcctgctttgagcagttcttgcaatgttttcatttcaatgaagcaattccctctt...
position 9124
XR_006934439.1 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus uncharacterized LOC101747852 (LOC101747852), transcript variant X1, ncRNA. (16151 bp)
tgcttgcttctgttgagcaggcttgccctcctggtggcatcgtgacctgcatttgaacttctcagaaacagcagcatttgtcttcctctaaaacctctcagagatgaaacacaagaaacatttcacttgtcaagactgtttactacctgttgaagtaaatgtaaatttgatgtttctctaagaaggagctgatggctttactctgtgctaacgtatccgtagatgtcttggcatttgattttgctattttgatactagaagcaattttcctatgatttagtgtcaaagctataaggtcatcttgacctgtttagaacatttctaaatagacttaaaaataagaggcaatggcatgaaaagaaactgaacttttcggaggtatctcaccacaggtacctgtaaatacttctctgtacctacagtgtttccaaataattttattattattatttcagcagaggctgtccctaatgaatgtatagtttcaacaagtaaaactgaagcacatatgatgtaaaagagagaaactgaatggcagttaccgatcctgctttgagcagttcttgcaatgttttcatttcaatgaagcaattccctctt...
position 9123
XR_006939073.1 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus uncharacterized LOC121109313 (LOC121109313), transcript variant X2, ncRNA. (19910 bp)
taactactcctaagcacagagcaagactccatttcctgtccctttgctttgcccattagaactacatcaactctgtgaccattcctgtttttacttccagagcttggaccaagcaggaaaaccgatccccagtcttaaaaatctactgcgtgttttgtaagatctgtgaaattacaaagctgaagcctttggatcctttgtgcttactcacagtttttgtttcatgaatgggtcatatgggcaagatctgttcctagcagcaatgcttcctcttcatcaggcagtaatggaaaaggtcattctgacctgaagagtggtctgaagtcagagatacctctggctgtacgctcccatctctgagagtaaagcacatatcttcagatcttagcacttgcttgtccttgactactaacttattttcagaggaaaggaaaaatcagcaactgggtgaggaatgccttgctcgaaactgtagttgatcagggtgtagatatttcacagtggcttcttctggcaaagaattgctcccttcacagatcagtgatattgtatgtatgaacctggtcattctccgaaatctggagagtaagaagtagattc...
position 2733
XR_006933265.1 - Gallus gallus (chicken) - NCBI - UCSC
PREDICTED: Gallus gallus solute carrier family 25 member 47 (SLC25A47), transcript variant X1, mRNA. (20332 bp)
caaaggccagccagcagaatgaagacaccatatagctttctgcagagacaatttctttcagaaacaaacttgctggccttgaataaagataactttctttagaaggcacatacagcttcatgtcactgataggtcctgttttttgtttaagaatatccaggtacgtttcagtgtgcctctttgtgactggcagagtaatgtgaagctattcacaatccgtgttccttggcaactgcaatggtggagtcacatttaagtgttttttgtcagacctatggaaatgttgctgtaataggtcacattgacctctctctatttctgagctggttgctgcacaaggaaattcaacgtccagtgttgcaacctgttaatcttcagaggactgaccctcattaccttgctctggcagcaatatggagtttacttgttaagaccagataaatggggttataaggcactctgtttcactgtttgaaaggcactggacatcaaaacaatgatcaactccttgtgatgactgaacaatagagaaagtgtaaatgaagccttttaaaagttaaataaatccaaaaaaaaaaaaaaaaccaaaacaagttggat...
position 4050
XM_040701258.2 - Gallus gallus (chicken) - NCBI - UCSC

Data Export:

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Debug Info:

Redirect URI : http://ggrna.dbcls.jp/gg/iubcomp%3aaggtcannrtgacct
lang : en | div : | spe : gg | query_string : iubcomp:aggtcannrtgacct | format : html | download : 

0.000 | 0.000 | search_start;
0.111 | 0.110 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((nt:aggtcataatgacct)%7C(nt:aggtcatattgacct)%7C(nt:aggtcatagtgacct)%7C(nt:aggtcatactgacct)%7C(nt:aggtcattatgacct)%7C(nt:aggtcattttgacct)%7C(nt:aggtcattgtgacct)%7C(nt:aggtcattctgacct)%7C(nt:aggtcatgatgacct)%7C(nt:aggtcatgttgacct)%7C(nt:aggtcatggtgacct)%7C(nt:aggtcatgctgacct)%7C(nt:aggtcatcatgacct)%7C(nt:aggtcatcttgacct)%7C(nt:aggtcatcgtgacct)%7C(nt:aggtcatcctgacct)%7C(nt:aggtcacaatgacct)%7C(nt:aggtcacattgacct)%7C(nt:aggtcacagtgacct)%7C(nt:aggtcacactgacct)%7C(nt:aggtcactatgacct)%7C(nt:aggtcactttgacct)%7C(nt:aggtcactgtgacct)%7C(nt:aggtcactctgacct)%7C(nt:aggtcacgatgacct)%7C(nt:aggtcacgttgacct)%7C(nt:aggtcacggtgacct)%7C(nt:aggtcacgctgacct)%7C(nt:aggtcaccatgacct)%7C(nt:aggtcaccttgacct)%7C(nt:aggtcaccgtgacct)%7C(nt:aggtcaccctgacct))?source=Gallus gallus (chicken)?to=0&format=json
0.325 | 0.215 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((nt:aggtcataatgacct)%7C(nt:aggtcatattgacct)%7C(nt:aggtcatagtgacct)%7C(nt:aggtcatactgacct)%7C(nt:aggtcattatgacct)%7C(nt:aggtcattttgacct)%7C(nt:aggtcattgtgacct)%7C(nt:aggtcattctgacct)%7C(nt:aggtcatgatgacct)%7C(nt:aggtcatgttgacct)%7C(nt:aggtcatggtgacct)%7C(nt:aggtcatgctgacct)%7C(nt:aggtcatcatgacct)%7C(nt:aggtcatcttgacct)%7C(nt:aggtcatcgtgacct)%7C(nt:aggtcatcctgacct)%7C(nt:aggtcacaatgacct)%7C(nt:aggtcacattgacct)%7C(nt:aggtcacagtgacct)%7C(nt:aggtcacactgacct)%7C(nt:aggtcactatgacct)%7C(nt:aggtcactttgacct)%7C(nt:aggtcactgtgacct)%7C(nt:aggtcactctgacct)%7C(nt:aggtcacgatgacct)%7C(nt:aggtcacgttgacct)%7C(nt:aggtcacggtgacct)%7C(nt:aggtcacgctgacct)%7C(nt:aggtcaccatgacct)%7C(nt:aggtcaccttgacct)%7C(nt:aggtcaccgtgacct)%7C(nt:aggtcaccctgacct))?source=Gallus gallus (chicken)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.339 | 0.014 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]