2024-05-19 17:38:21, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_046918642 10852 bp mRNA linear VRT 01-MAR-2022 DEFINITION PREDICTED: Gallus gallus dicer 1, ribonuclease III (DICER1), transcript variant X9, mRNA. ACCESSION XM_046918642 VERSION XM_046918642.1 DBLINK BioProject: PRJNA698614 KEYWORDS RefSeq; includes ab initio. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052577.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..10852 /organism="Gallus gallus" /mol_type="mRNA" /isolate="bGalGal1" /db_xref="taxon:9031" /chromosome="5" /sex="female" /tissue_type="blood" /country="USA: Fayetteville" /lat_lon="36.0822 N 94.1719 W" /collection_date="20-May-2019" /collected_by="Nick Anthony" gene 1..10852 /gene="DICER1" /gene_synonym="dicer" /note="dicer 1, ribonuclease III; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 11 ESTs, 879 long SRA reads, 20 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 35 samples with support for all annotated introns" /db_xref="CGNC:8359" /db_xref="GeneID:423437" misc_feature 1 /gene="DICER1" /gene_synonym="dicer" /experiment="COORDINATES: cap analysis [ECO:0007248]" /note="transcription start site" CDS 479..6244 /gene="DICER1" /gene_synonym="dicer" /codon_start=1 /product="endoribonuclease Dicer isoform X1" /protein_id="XP_046774598.1" /db_xref="GeneID:423437" /db_xref="CGNC:8359" /translation="
MKSPALQSLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVNSANQVAQQVSAVRTHSDLKVGEYSSLEVTESWTKEKWSQEFSKHQVLVMTCHVALTVLRNEYLSLSNINLLVFDECHLAIQDHPYREIMKICEDYPSCPRILGLTASILNGKCDPAELEEKIKKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGPYTDKSGLYGRLLRELDEALHFLNDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIHALCEEHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTSETETEPIVDDDDVFPPYVLRTDENSPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTRELPDHTFYSTLYLPINSPLRASIVGPPMSCARLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKPALEFKPTEADSAYCVLPLNIVDDSSTLDIDFKFMEDIEKSEARTGIPSTQYTKEMPFIFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTATDAGVGVKSLPADFRYPNLDFGWKKSIDSKSFISIPSSSLVENENYCKHSTIVVPENAAHQGANRTSSAEKHDQMSVSYRTLLDESPSKLQIDVSAELAAINGVSYNKNLANGNCDLVNRDFCQGNQLNYCRQEIPVQPTTSYPIQNLYSSENQPKPSNECTLLSNKYLDGNANRSTSDGCPKMTLTTSTSTALNLSKDKVDSEKNTSSGYSSKTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYIVNQDKSNTDKWEKDETTKENLLANGKLDYDDDDEEDEDLMWRLPKEETDFEDDFLEYDQEHIKFIDSMLMGSGAFVKKISLSHFSTTDSNYEWKAPKKSSLGNVPFSSDFDDFDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDAGKQSISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKKTDWESTLCATGENCNSEQKNLSPNSVSACIVNSEPSLYKDLEYGCLKIPPRCMFDHPDAEKTLNHLISGFENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVPNS"
misc_feature 602..1195 /gene="DICER1" /gene_synonym="dicer" /note="DEXH-box helicase domain of endoribonuclease Dicer; Region: DEXHc_dicer; cd18034" /db_xref="CDD:350792" misc_feature order(602..613,620..622,671..694,815..817,1004..1006, 1097..1099) /gene="DICER1" /gene_synonym="dicer" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350792" misc_feature order(779..784,851..856,929..931,935..940,947..949, 1022..1030) /gene="DICER1" /gene_synonym="dicer" /note="nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:350792" misc_feature 1289..1573 /gene="DICER1" /gene_synonym="dicer" /note="Partner-binding domain of the endoribonuclease Dicer; Region: Dicer_PBD; cd15903" /db_xref="CDD:277191" misc_feature order(1304..1309,1316..1318,1322..1327,1502..1507, 1514..1519,1526..1528,1535..1540,1547..1549) /gene="DICER1" /gene_synonym="dicer" /note="Trbp binding interface [polypeptide binding]; other site" /db_xref="CDD:277191" misc_feature 1592..2170 /gene="DICER1" /gene_synonym="dicer" /note="C-terminal helicase domain of the endoribonuclease Dicer; Region: SF2_C_dicer; cd18802" /db_xref="CDD:350189" misc_feature order(1823..1831,2039..2041,2096..2098,2102..2104) /gene="DICER1" /gene_synonym="dicer" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:350189" misc_feature order(2051..2053,2057..2059,2132..2134,2138..2140) /gene="DICER1" /gene_synonym="dicer" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 2366..2632 /gene="DICER1" /gene_synonym="dicer" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:427264" misc_feature 3134..3502 /gene="DICER1" /gene_synonym="dicer" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD:239209" misc_feature order(3323..3325,3362..3364,3380..3382,3392..3394, 3446..3448,3470..3472,3476..3478) /gene="DICER1" /gene_synonym="dicer" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239209" misc_feature 4367..>4642 /gene="DICER1" /gene_synonym="dicer" /note="Ribonuclease III family; Region: RIBOc; smart00535" /db_xref="CDD:197778" misc_feature order(4418..4423,4430..4435,4442..4444,4451..4456, 4463..4468,4472..4480,4508..4510) /gene="DICER1" /gene_synonym="dicer" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:238333" misc_feature 5471..6229 /gene="DICER1" /gene_synonym="dicer" /note="dsRNA-specific ribonuclease [Transcription]; Region: Rnc; COG0571" /db_xref="CDD:223644" polyA_site 10852 /gene="DICER1" /gene_synonym="dicer" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ggaggagaacgggaggccgcgagcctcgccatgctttggaggggaaggcgcacacacgtgagctcttggaccacccggcagctcccgagcagctgctgtgtcgccttgccgcattggctgatctgtgaacctttcaccttttatctaggtctcgccgccaatcgtttggttcctttcatgtcgcggggacgcgaagcgtaagctgcgcagggtggaattctcggagcgggcttgcgtcgcaggcgctgggcggcctccgttggttacctagggtgaaacaaaattacaggcttggaaactctggaaaagctcagcatcagtatttgagagccgaagcctgcaaattatgtgattaacctacaagctgatatcatgatgtcaaaatgcagtttggaaagcataagcacagaggctgcagagattaaaacgtaggctgtgctggaacaaaaacgcaatgacagaaacactggatgaatgaatgaaaagccctgctttgcaatccctcagcatggcgggactgcagctcatgacccctgcttcctccccaatgggtccattttttggactaccgtggcaacaagaagcaattcatgataacatttatacgccaagaaaatatcaggttgaactgcttgaagcagctttggatcataatacaatagtctgtttaaacactggctcagggaagacttttattgcagtactactcactaaagagctgtcctatcagatcaggggggatttcaacaaaaacggaaaaagaactgtgttcttggtcaactcagcaaatcaagttgctcagcaagtgtcagctgtcaggacacattcagatcttaaagtgggagagtattcaagtttagaggtaactgaatcatggacaaaagagaaatggagtcaggaattctctaagcatcaggttctggttatgacatgtcatgttgctttgactgttttgagaaatgagtatttatccctatcaaatattaatctactggtgtttgatgagtgccatcttgcaatccaggaccatccataccgtgaaattatgaagatctgtgaggattacccatcttgccctcgaatcttgggattaactgcttccattttaaatgggaagtgtgatcctgctgagttagaagaaaagataaagaaactggagaaaatactaaagagcaatgctgaaactgcaactgatttggtggtcttagatagatatacttctcagccatgtgagattgttgtagactgtggaccatatactgacaaaagtggattgtacggaagactattaagggaattagatgaagcacttcattttctaaatgactgcaacatatctgtacattcaaaggaaagagattctacgttaatttctaaacagatattgtcagactgtcgagctgtgttggttgttctgggaccctggtgtgcagataaggtagctgggatgatggtgagagagctacagaagtatatcaaacatgagcaagaggagctgcacaggaaatttttattgtttacagacactttccttaggaaaatacatgcactctgtgaagagcatttctcacctgcctcacttgacctgaaatttgtaactccaaaagtaataaagctgcttgaaatcttgcgcaaatacaaaccatatgaacggcagcagttcgaaagtgttgaatggtataacaatagaaatcaggataattatgtatcatggagtgattctgaagatgatgatgaagatgaagagattgaggagaaagagaagccagagactaatttcccatctccttttacgaatattttatgtggaattatttttgtggaaagaagatacacagcagttgtactaaataggttgataaaagaagctggcaaacaggatccagaactggcttacatcagtagcaatttcataactggacatggcattggcaagaatcagcctcgtaacaagcagatggaagtagaattcagaaagcaggaagaggttcttagaaaatttcgagcacacgagaccaatcttcttattgctaccagtattgtagaagagggtgttgacataccaaaatgcaatttggtggtgcgttttgatttgcccacagaataccgttcctatgtgcagtcaaaaggaagagctagagcaccaatttccaattatataatgttagcagatacagacaaaattaaaagttttgaggaagatcttaagacatataaagcaattgagaagatcctgagaaataaatgctcaaaatctgttgataccagcgaaactgaaactgaacccattgttgatgatgatgatgtgtttccaccctatgtgctgaggacagatgagaacagtccaagagttactatcaacactgcaattggacacataaataggtactgcgctagattaccaagtgatccatttacacacctagctcccaagtgtaaaacccgagaactacctgatcatacattctactctactctctacctgccaatcaactcacctcttcgagcatcaattgttggtcctccaatgagttgtgcaagattggctgagagagttgtagctcttatttgctgtgaaaaactgcacaaaatcggtgaactggatgaccatttgatgccagttggaaaagaaacggttaaatatgaggaagagcttgatttacatgatgaagaagaaaccagtgtgccaggaagaccaggctctacaaaaagacgacagtgctaccctaaagctattccagaatgtttgagggatagttatcccaaacctgatcagccctgttacctgtatgtaataggaatggtgttaactactccattgcctgatgagctcaactttaggagacgaaagctatatcctcctgaggatacgacgagatgttttggcatattgacagccaaacctatacctcagattcctcactttcctgtgtatactcgctctggagaggttacaatatctattgagcttaagaaatctggttttactttgtctttgcaaatgcttgagctgataacacgactccaccagtacattttctcacatattcttcgtcttgagaaacctgcactagagttcaaacccacagaagctgattcagcctattgtgttctacctcttaacattgttgatgactccagcactttggacattgactttaagtttatggaagacattgaaaagtctgaagcgcgtacaggcattcccagtacacagtatacaaaagaaatgccttttattttcaagttagaagactaccaggatgcagttatcattccacggtatcgaaattttgatcagcctcatcgattctatgtagctgatgtatacactgatcttactccactcagtaaattcccttcccctgaatatgaaacttttgctgaatattataaaacaaaatataatcttgacctgaccaatctcaaccagccgctgctggatgtggaccacacatcttcaagacttaatcttttgactcctcgccatttgaatcagaaggggaaagcacttccactaagcagtgctgagaagaggaaagcaaaatgggaaagtctgcagaataagcagatactggttcctgagctatgtgctatacatcctattccagcatcgttgtggagaaaagcagtttgcctccccagcatactttatcgcctgcactgccttttgacagcagaggaactaagagctcaaacagccactgatgctggcgtaggggttaaatcacttcctgcagatttcagatatcctaacctggacttcggatggaaaaaatctattgacagcaaatctttcatctccatacctagctcctctttggtagagaatgaaaattactgtaagcacagcacaattgtagtccctgaaaatgctgcacatcaaggtgctaatagaacctcttctgcagaaaaacatgaccaaatgtctgtgagttacagaacactgcttgatgagtcacccagtaaactccaaattgatgtctcagcagaacttgcagcaattaatggtgtttcttataataaaaatcttgccaatggcaattgtgatttagttaacagagacttttgccaaggaaatcagctgaattactgcaggcaggaaatacctgtacaaccaactacctcatatcccattcagaatttatacagcagtgagaaccagcccaagcccagcaatgaatgtactctactgagtaataaataccttgatggaaatgctaacagatctacctcagatggatgccccaaaatgacattgaccaccagtacttcaacagctcttaatctttcaaaagacaaagtggattctgaaaagaacacttccagtgggtactcctcaaaaactcttggtcctaatcctggtctcattcttcaggctttgactctttcaaatgctagtgatggatttaatttggagcggctagaaatgcttggtgattcatttttaaagcatgccatcactacatacttgttttgcacttaccctgatgcgcacgagggacggctgtcatacatgagaagtaaaaaagtcagcaactgtaacttgtatcgccttggaaaaaagaaaggactgcctagtcgaatggtggtatcgatttttgatcctcctgtcaattggcttcctcctggttacatagtaaaccaggacaagagcaacactgataaatgggagaaagacgaaacgacaaaggagaatttgttggctaatggtaaacttgattatgatgatgacgacgaagaggatgaagacctaatgtggaggttgcccaaggaagaaacagactttgaagatgattttttggagtatgatcaagagcatatcaaattcatagatagtatgttaatgggatcgggggcttttgtgaagaaaatttctctctctcacttttcaaccactgattcaaactatgaatggaaagcacccaaaaagtcatccctgggtaacgttccgttttcatcagattttgatgattttgactacagctcttgggatgcta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tatcccagtcacagcagcatccataatctgaaagtgacaaatagtgttgagatctgctgtgatgctacacttgcttctgtctgacagtattctgggtttatatgctttggatgggactctctgcaaaaacgttcttttggaaatctctgtattttttatatgagtaaagtgagaaggattttgatttttggtacttaattactgacattgatccttttccaactgctctgattttcaagaagctgatttctttaccttcctgttaggcttaaaacttaaaacactacagtttgtgaccatgaaatgtaatctaaatatcaactgtaactctgtaactcaatctgaattatgttagcaaatatctagaggtcattgtagtatactccactagcagttaaaattaacttttatcaaagctaactacatttcttaaaaataaattttatccaataaactccttgggttttttccctcttttatttgaatggcaaccacagactactttaattgctttgtagatgcactcagaatatactgcagcagcaagttagagagaaaaatgtttgtggacaataattgggaattgcaggcgtttttattgtaaatagtttgactgaaaagatggttaaaatcaagtagaatgaataacaaatataatttgatggacaataaaatatttaccatcacatgctgcagctgtctttaagggacataaaatgtaattcattcatactgtaatcttgctgcagaaatttgcaatctgcaccttatggatcacaattacctttaatagttttttgtaataattgtagctgaatatatctccaataaagttatggtctgttcaccttg
//
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@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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