2024-05-19 18:59:02, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_046912383 6672 bp mRNA linear VRT 01-MAR-2022 DEFINITION PREDICTED: Gallus gallus testis and ovary specific PAZ domain containing 1 (TOPAZ1), transcript variant X2, mRNA. ACCESSION XM_046912383 VERSION XM_046912383.1 DBLINK BioProject: PRJNA698614 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052574.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6672 /organism="Gallus gallus" /mol_type="mRNA" /isolate="bGalGal1" /db_xref="taxon:9031" /chromosome="2" /sex="female" /tissue_type="blood" /country="USA: Fayetteville" /lat_lon="36.0822 N 94.1719 W" /collection_date="20-May-2019" /collected_by="Nick Anthony" gene 1..6672 /gene="TOPAZ1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 7 long SRA reads, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="CGNC:65761" /db_xref="GeneID:100857244" misc_feature 1 /gene="TOPAZ1" /experiment="COORDINATES: cap analysis [ECO:0007248]" /note="transcription start site" CDS 142..5754 /gene="TOPAZ1" /codon_start=1 /product="protein TOPAZ1 isoform X2" /protein_id="XP_046768339.1" /db_xref="GeneID:100857244" /db_xref="CGNC:65761" /translation="
MSSERKNGSALQISDSSVCEGGQTAAIVAGVCLEKTVGKETGQGQQSFCLGTDLQKKLSGETGSPETPNLSGFQENTRCSGKKRKHSYMELKLQIPALEENLERTERHSVVSCLSEPEVLQPRMGTCSTEMKGTASLMILNLQIPGLKSLGTEESFLSESKPQEVVDNPEIIDGCSLERLKKPKKGGKRYLTKKGRQSLVKSELQGARRSALLELYTQCVESKENAAVLTEEDSLPLLCVQGLSGQEQSTTEGEQHKCCIVEHQLSSDLQKGADGVQESAKKKQKKNKQNSGIQAVKKCKKNLMRSENPCGKESHFLESPAVDALTGTQSKIFVCHPETKRSGVQRKKRKPRTDSIKCMQNFSLTTAEKAMNSEHNDAENSRDSLNSCDDLLDVTRKNPFVRLEACSFINTFVKSSMNGATSTFNVSGFFHKAQDERNSISPGGTVEWSDMNCSPNRMQDERSLIKDSLVFNKEGHFSCNQSKNSKFSREKKRSTVRKSRKKMKITEMSAMQTVLPDVTNECSKRALPAEAAVASSDSSATLGLNNQEVSLSNVYDCASHLRTESNTSEAQKSRKNRRKNSTKLLAFEDGCKKTSDLSVVAERKDSNTVASQCHPVTSGSLRALTHAHNVSYHHNSMTDEKLNKVRKKLQQFTCQRAIPMTGKHVWPIESCARTSGWIPKSCGSVSEGKIILSPVFAESSDESSVKTIGNSAVTGSLRQLVLHTSLAEVNKEPEHKIMDLNAGCLTSVEISESSSVGINETSRMSSENAESPVNMVKSAVPFNPDDMKEDEATSNFTTSAKDKGAVTKRNPSVAGQNTASKGKRNRVNLDHKASVVNQMLSDLKQTTVLNTRNLTSFKIPLRRNKPESGTLEPVSSFESKTCSLPELLDSSGVSGRQKRDEETTSIKVKQQPPPVVSDALSTASVKKKADEVNNKDFWHDGSERLSDEMSTLPDPVFLYPCRLERQLKSSAPDFCGTECVWKSEVSHHSGDTVDHRVALEIRDDSTSKVNLPQHKSEKFPDVLEAYNKDVLVIDVIQDDPDLFGTSGEEELTVTDSENCPAEACCSSIFVKEEKQCLECAVTSESSHSVNGNFRDVNIQESGKSNDAENSWDLMLKASDIKTHNSSSGNSPMRSFTEDSFEDGQLTELDELLKSFEIDEKFKFADGVAAVEPSEKSEAEKSDCKYRDLVNCELLSELPLHAPNVNKFSESMLQKPWKNDFRFSGKSLSLPLQTYRDSETGKTDKNIKASHSVQQILEMINLPRRYCRFYFMTLRGCERSKCWFWHVPKRGHEKICMAILKTYISINESGLLKRAVQIFARYYREVTPGENFDFQVLNDLLICLLKKCLLQEVFQMLNVTAQINTLPALEVLLRVFECVASLNVRDAVPTLISSFCKLVDAGMFLEYEHFNYIIKLLHQLQVSSQEIDTVLNIKCRFQEMHFKSNWLFDFNLVMAEIQHCKEKNDWAKLGALYVNARTACEHSDDLQKLSLCITEILTKDSEKDRPGVPFCDFADAVIKNSQCNEADRIFIGRAGISVMNSYRRVLQWIKGRKVLDKLQELQIHFTVLKGLTGSERLASRCQIVNTAAEIFLETESLDGAIRVLRESEWITNAALWPCSESDIISRHNLLFSLMHKYLRQSCYRQAFEVLQNLPGFQNGCDTVDVSQYSHVFNKLLNACFESKNLGVLSSAVDFMLSKNIAVDFFLLRGLITGLGRSCLWSKARTYYKTALSLGCYPPLEGNLRHKILPIPFYVSEVEMLLAIELFLVSNASDIQSPGATTQSFQIVLKRCEDQAVKNSSDYQAGRERLILAARLSDPKLFLRHMTVNVNMEEVYSLELTSALKWLKENMKWAGKAKQAPHIIAQKLRRGN"
misc_feature 4507..5034 /gene="TOPAZ1" /note="Putative aspartate racemase; Region: Asp_Glu_race_2; pfam14669" /db_xref="CDD:434113" polyA_site 6672 /gene="TOPAZ1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
gggggtgggaactggctggtggctgtgggctcgcaggctgtgcttctgtcgggccaggttttgctgaggcaggagaagaaggagcaagccaagagtaggcagaggccaggtggtaagaaaaacaagggggtacagagaaggatgtcttctgaaaggaagaatggttctgctctgcagatatcagacagttctgtgtgtgaaggtgggcagacagcagccatagtggcaggagtgtgtttggaaaagactgtaggcaaagagacaggacaaggtcagcaatcgttttgcttaggaactgacttgcagaagaaattgtcaggagagactggcagcccagaaacaccaaacctctctggtttccaggagaatacaagatgctctggaaaaaaacgcaagcattcctatatggaattgaaattgcaaatcccagccttagaggagaatcttgagagaacagagaggcatagtgttgtttcctgtttgtcagaacctgaggtgctgcagcctagaatgggcacgtgtagcactgaaatgaaaggcactgcctccttaatgatactgaatctgcaaatcccaggtcttaagagtttggggactgaggagtctttcttgtctgaatcaaaacctcaggaagtggtggataatccagagattatagatgggtgttccctagaaaggctgaaaaagccaaagaagggaggaaagaggtacttgacaaagaagggcaggcaatctttggtgaaatcagaactacagggggcaagaagatctgccctgctagagctgtatacacagtgtgtggagtccaaggaaaatgctgcagttttgacagaggaagactcattgccgttactatgtgtgcagggcttaagtggccaagaacaatcaacaactgaaggggagcagcacaagtgttgcatcgtcgaacatcagctgagctcagaccttcagaaaggagcagatggcgtgcaggaaagtgcaaagaaaaaacagaaaaaaaataaacaaaactcaggtatacaagctgtgaagaagtgtaaaaaaaatctcatgagatcagaaaatccctgtggaaaggagtctcacttcttggaatctcctgcagttgatgcgttaactgggacacaaagcaagatttttgtatgccatcctgaaactaaaagatctggtgtacagcgtaaaaaaagaaaacccagaactgattctatcaagtgcatgcagaattttagcctaactacagctgaaaaagcaatgaattcagaacataatgatgctgagaatagtagagacagcctaaacagctgtgacgacttgctggatgtaacaaggaagaacccatttgtaagattggaggcctgtagtttcatcaatacatttgtaaaatcttcaatgaatggagctacgagcacctttaatgtaagtggattcttccataaagcccaggatgagaggaattccattagtcctggcggtactgtagaatggagtgatatgaattgcagccctaatagaatgcaagatgagagatcactcattaaagatagtttagtgtttaataaagaagggcatttttcatgcaaccagagcaaaaacagtaagttctcaagggaaaaaaagcgtagtactgttagaaagagtagaaaaaagatgaaaatcactgagatgtcagccatgcagactgttttgccggatgttactaatgaatgcagtaagcgtgcgttaccagcagaagcagcagttgcctcttcagactcttctgcaaccttagggctaaataatcaagaagtatctctgtcaaatgtgtatgattgtgcatctcatctacgtacagaaagcaatacttctgaagcgcagaagagtagaaagaataggagaaagaacagtactaaactacttgcatttgaagatggctgtaagaagacatctgatctgtctgtagtagcagaaagaaaagattcaaacactgtggcatcacagtgccaccctgttacctcaggtagcctgagagcactaactcatgcccataatgtttcttatcatcacaacagcatgacggatgaaaaattaaataaagttagaaagaaattgcagcagtttacctgtcaacgagcaatacctatgactggcaagcatgtttggcctattgaatcttgtgccaggacttctggatggatccctaaaagttgtgggtctgtctcagaaggaaaaataattttaagtccagtctttgcagagtcctctgatgaaagcagtgtaaaaaccataggaaacagtgctgtgacagggagtttgagacagttggttttgcatacatcattggcagaagttaacaaagaacctgaacataaaataatggatttaaatgctggatgtctaacttcagttgaaatctcagaatcctcttctgtgggtattaatgagacttctagaatgagcagtgaaaatgcggaatcaccagttaatatggttaaaagtgctgtgccttttaaccctgatgatatgaaagaagatgaagcaacctcaaattttacaacaagtgcaaaagataaaggagctgtaacaaagagaaacccgtcggtggcaggccagaatactgcatctaaaggaaaacgaaacagagtaaacttagaccataaagcatcagttgtgaaccagatgctttctgatttaaaacaaacaacagtactaaacaccagaaacctgacgagtttcaaaatacctttacgcagaaacaaacctgaatctgggacactggaacctgtcagttcatttgagagtaagacctgtagcctaccagagcttcttgatagctctggtgtttcaggaagacagaaaagagatgaggagactacctcgataaaggttaagcagcagcctcctcctgtagtaagtgatgctctatctacagcttccgtgaagaaaaaagctgatgaggttaacaataaggacttttggcatgatggctctgaaaggctttcagatgagatgtccacactccctgatcctgtctttttatatccatgtcgtcttgagaggcagttaaagtcatctgcacctgacttctgtggtactgaatgtgtatggaaatcagaggtttcccatcattcaggggatacagttgaccaccgtgttgcattagaaatacgtgatgatagcacatcaaaagtcaatcttccacaacacaaaagtgaaaagtttccagatgttcttgaagcttacaacaaagatgttcttgtcattgatgtgatccaggatgaccccgatctttttggaaccagtggcgaagaggagcttacagtcacagacagtgaaaattgtcctgcagaggcatgctgttctagcatcttcgttaaagaagaaaagcaatgtctggagtgtgctgttacttcagaaagcagtcattcagtaaacggtaattttagagacgttaatatacaagaatctggaaagtcgaatgatgctgaaaattcatgggatttgatgctaaaagcttcagatattaaaacccacaattcctccagtggaaacagtcctatgcgaagttttactgaggactcttttgaagatggacaactaacagagctagatgaacttctaaagagttttgaaatagatgaaaagttcaagtttgcagatggagtggctgctgtggaaccaagcgaaaaaagtgaagctgaaaaaagtgactgtaaatacagagatcttgtgaactgtgaactgctctcagaattgccgttgcatgccccgaatgtaaacaaattcagtgaaagtatgctgcagaaaccctggaagaatgattttagattctcaggaaaaagtctttcgctgcccctgcaaacttacagagattctgagacagggaagacagacaaaaatataaaagcttcccattcagtccagcagatcctggagatgattaacttaccccgtagatactgcagattttatttcatgactttgcgtggctgtgaaaggtcaaaatgttggttttggcacgttcctaaacgagggcatgaaaagatttgcatggcaatacttaagacatacattagtatcaatgaatcaggccttctgaaacgtgcagtccaaatatttgccaggtattacagagaagttacccctggtgagaattttgattttcaagtgctgaatgatcttctcatttgtttgctcaagaaatgtttgttgcaagaagtgttccagatgttgaacgtaactgcacagattaatacactaccagctttagaagttcttctcagagtttttgaatgtgtggcttccttgaatgtaagagatgctgtgcctacactgatcagtagcttttgtaagctcgttgatgctggtatgtttcttgagtatgaacattttaactacataattaaactccttcaccaattgcaagtctcgagccaggaaatagatactgttttgaacataaaatgcagatttcaggaaatgcattttaaaagcaactggctgtttgactttaatttggtaatggcagaaattcagcattgcaaggaaaagaatgattgggccaagttgggagctttgtatgttaatgcaagaactgcatgtgaacattctgatgatcttcagaaattgtctttatgcattactgaaatactaacaaaagattctgagaaagacagaccaggagttcctttttgtgattttgctgatgcagtaataaaaaattcccagtgtaacgaagcagacagaattttcattggaagggctgggataagtgtaatgaattcttatcgcagagtactgcagtggataaagggaaggaaggttctggataaattgcaagaactacagatacattttacagttctgaaaggacttactgggtcagagaggttagcatcaagatgtcaaattgttaatactgctgcagaaatttttcttgaaacagaaagtttagatggagcgatacgggtgttgagagagtccgagtggatcaccaatgcagctctgtggccctgcagtgaaagtgacatcatcagccgacataacctgttattttcactcatgcacaaatacctgaggcagagttgctacaggcaggcatttgaagttctgcagaacttgccaggtttccagaatggctgtgatactgtagatgtttctcagtacagccacgtttttaacaagctgttaaatgcctgttttgagagcaagaacctcggggtcttgtcttctgctgtagacttcatgctttccaagaatatagctgttgattttttcttacttagaggactaatcacaggtttgggaagaagttgtttgtggagtaaagctcgaacctactacaaaactgctttgtcgttgggttgctaccccccgctggagggaaatctacgtcacaaaatactgccaattcctttttacgtgtctgaagttgagatgctgttggccattgagttattcctcgtttcaaatgccagtgatattcagagtccaggagctactactcagagttttcaaatagtactgaaaagatgtgaagaccaggcagttaagaatagcagtgactatcaagcaggaagggagagacttatcctggctgctcgtctatctgatccaaagctctttcttcggcacatgacagtgaacgttaatatggaagaagtgtacagcttggagctcacatctgctctcaaatggcttaaggagaatatgaaatgggcgggcaaggcaaagcaagctccccacatcattgctcagaagttaagaagaggtaactgatgcatccgaatccagctttctgtcagtacggtttttctctctatcaccaagataaacaagtaggcaactcaaacaggtttactgtaagtcttaggcctcacactttttgagtccactcggaatactgtagaaatctggtctttctgatgtgtatcaggacttgaaaaaggtttactgatcaacattctcagtaccattttggcaacaggaactccattgctaaataagatgtaacgggtgagcaaaactccagtgctgaatgaaaggagccggaaaggatgaagaagtgttccaaaggagaaagttaagtacaacaaaaacgacacagttttgccaagtcagctaccatagacagtacccatctattttctttgccccaagtataagttgctgtttcttagtaggtgaaagaacctctgtgttagaaataaagcaactcctttattagttttattttcctccgtgttggagacaaaacgtacacttgtttgcagatggagagagaaaaatgtgggaaaaaaaatcccatgctgcacttagaagctacatctagaaaagctgtgcttctgcagtgcttttttagttacagtgtatgagaaatgtcttttttctctatggaaaccttttgtccgttttcactgattacagtgtatatattttggaaatattacttttgtaggtatggacagtttcttacaaggaaaacggaataatgtcgtttggaagacttggaacaatttcgtttcaaagcactgatagttttgagggtattttgaaacccccatctttgttggaagtgagaggttggaaatcgaagcttgttggtttatatgatgtttcatattgtagtagagggggggagggagggtcattctggaggaattgttaagatgttaataaatgttttattccttgtgt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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