2024-05-19 15:02:23, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_040683312 8289 bp mRNA linear VRT 01-MAR-2022 DEFINITION PREDICTED: Gallus gallus trinucleotide repeat containing 6A (TNRC6A), transcript variant X12, mRNA. ACCESSION XM_040683312 VERSION XM_040683312.2 DBLINK BioProject: PRJNA698614 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052586.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 1, 2022 this sequence version replaced XM_040683312.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8289 /organism="Gallus gallus" /mol_type="mRNA" /isolate="bGalGal1" /db_xref="taxon:9031" /chromosome="14" /sex="female" /tissue_type="blood" /country="USA: Fayetteville" /lat_lon="36.0822 N 94.1719 W" /collection_date="20-May-2019" /collected_by="Nick Anthony" gene 1..8289 /gene="TNRC6A" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 mRNAs, 8 ESTs, 896 long SRA reads, 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns" /db_xref="CGNC:4550" /db_xref="GeneID:416570" misc_feature 1 /gene="TNRC6A" /experiment="COORDINATES: cap analysis [ECO:0007248]" /note="transcription start site" CDS 549..5891 /gene="TNRC6A" /codon_start=1 /product="trinucleotide repeat-containing gene 6A protein isoform X6" /protein_id="XP_040539246.2" /db_xref="GeneID:416570" /db_xref="CGNC:4550" /translation="
MPPIRDLVSHSPNQSDLNHSGLGSHYENSHWGPVSSNSDSSTNWDKVIVDGSDKEAWPSITGSDPELTSECMDTDSASSSGSERNLIIMASGSTGGENDGIRNGIGHGSQNKFVVGSNSNNVGNGSINGPWGLSHGTIISTCQVSVDAPDSKSESSNNRMNAWGTINSSSNGGLNPSTLNSNGNHGAWPVLENNGHALKGSVGSGNSGTNIQCSTVGQISNSQSINSKVGGSAHGSWGSLQENCDSEVNGTRKVSFSGQPQNLNTEMNGPNNTTNFMTSSLPNSAGSAQINELPNNTGHGAWRVSTMNHSQIQASPVTNGTSISHLSNGEAKNGGSYGTTWGAYGSNYSGDKCSGPNSQANGDTVNATLMQSGISGPGSTNFQINGNKGGGVWEAGTVNSQNMPWGSGNGASAGGSRRGWGNPAQNTGTNISNGEWSKLPSNQHSNESVNGNTRKFTNGWKSTEEDDLNSQSSAVSQITEQNSAWAKTGTGDGEGSTESTGCHEDRVATEGQNRERRKVDQHALLQSIVNRTDLDPRVLSNSGWGQTPIKQNTAWDTETSPRGERKTDNGTEAWGGSVTQTSSSGGCVDRPSPNNNDTSSVSGWGDPKSATRWGDSKGSNSQGGWEEDSAATVMVKSNQSWGSGKEEKSSWNDTQKMKQGWVEGQKASQGWAVSASDSWGENSRSNHWGETKKSSSGGSDSDRSVSGWNEPGKSNSVTWGGSNNTNPNNSSGWDEPAKSNQSQGWGDPPKSNQPQGWGDSSKPINSPEWNKQDVGSWGAPSATNKPPGSGWLGGPMPAPVKEEEPTGWEEPSPESIRRKMEIDDGTSAWGDPSKYNYKNVNMWNKNVPNSSSSSDQQAQVHQQLLSSSAMSSKESSSGSGWGEPSTPATTVDNGTSAWGKPMDTGTSWGEPISDAGGTSGWGNASLGQQAPNKPGPKSMQDSWCGDDMPLTGSRQTSWEEEEDVEIGMWNSSSSQEANTSLNWPPYMKKMPTKGIMKGGNKQDEAWINPFIKQFTNLSFSRESPEETIQSNKMDVSGGILQDKRMEIDKHGLNVGDYNRVVGKGPGSRPQISKESSMDRSPYFDKDGIVADESQNMQFMSNQNMKLPPSNSALPNQALGSLAGLGMQNLNSVRQNGNPSVFGVGNIAAQPRSMQQPPAQPLNSSQPNPRAQVPPPLLSPQVPVSLLKYAPNNGGLSPLFGPQQVAMLNQLSQLNQLSQISQLQRLLAQQQKVQNQRSMPSGGRQQQEQQGRSISMQQQMMQQSRQLDPNLLMKQQTPPSQQQSLHQPTMKSFLENVIPHATPELQKGPSPINSFSSFPIGFSPISTSEIPGMNSNLNVNMDMSSIKEPPQSRLRKWTTVDSISVNTSLEQNSSKHGAISSGFRLEESPFVPYDFMNSSTSPASPPGSIGDGWPRAKSPNGSSSVNWPPEFRPGEPWKGYPNIDPETDPYVTPGSVINNLSINTVREVDHLRDRNSGSSSSLNTTLPSTSAWSSIRASNYNVSLSSTAQSTSVARNSDSKSTWSPGSVTNTSLAHELWKVPLPPKSITAPSRPPPGLTGQKPPLSTWDNSLRLGGGWGNSDARYTPGSSWGESSSGRITNWLVLKNLTPQIDGSTLRTLCMQHGPLITFHLNLPHGNALVRYSSKEEVVKAQKSLHMCVLGNTTILAEFASEEEISRFFAQGQSLTPSPGWQSLGSSQNRLGSIDGSHSFSNRNDLNHWNGAGLSGTSSGDLHGTSLWGSPNYSTSLWGTPSSNDTRGISSPSPINAFLSVDHLGGGGESM"
misc_feature 3222..3581 /gene="TNRC6A" /note="Argonaute hook; Region: Ago_hook; pfam10427" /db_xref="CDD:431279" misc_feature 3858..4409 /gene="TNRC6A" /note="M domain of GW182; Region: M_domain; pfam12938" /db_xref="CDD:432890" misc_feature 4482..5303 /gene="TNRC6A" /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg; pfam16608" /db_xref="CDD:435458" misc_feature 5325..5600 /gene="TNRC6A" /note="RNA recognition motif (RRM) found in vertebrate GW182 autoantigen; Region: RRM_TNRC6A; cd12711" /db_xref="CDD:410110" polyA_site 8289 /gene="TNRC6A" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ggccgggttaggaggcaggaaatggcggcggtgctgcagcagcagctgccgggccctcccgctccgcagtgccgggcccaggccgcctagagccgccgcgccagcgccgggcccgggccgcagctacgccgggccggactccgagcactttacatacatgagagagttggaagctaaagctaccaaagaagtcgaaagaaaactaagcagtgccagaacaaaccaagacaagtgtaagccagcctcagcctgtcacctctaacggcacttccacagcaaccagcactaataataatgccaagcgggccacagccaacaatcagcagcagcaaaccttgcctcgataccctcctcgtgaagtaccaccgcgatttcgacaccaggaacagaaacagcttctgaaacgaggtcagcagttaccagttatagctgcaaacctgggatctactcctaaagtattaaacggccagtcaggaggcagcactgtcacaaccaaacagccggtgaccaacggagaagtaccaaacagcagcaaaaaacagccaggcatgcctcccattcgggacttggtgagccactcccctaaccagtcagatctgaaccacagtggtctaggatcccattatgaaaattctcactggggaccagtctcttcaaatagtgactccagcacaaactgggataaagttattgtagacggctctgacaaagaagcatggccatcaatcactggcagtgacccagagttgacatcagaatgtatggacactgactctgcctctagctctgggtcagagagaaacctcattataatggcttcagggagcacaggtggtgaaaatgatggcattcgaaatggcatcggacatggttctcaaaataagtttgtggttggtagcaacagcaataatgtgggcaatggaagtattaatgggccttggggtttatcccatgggaccataataagcacatgtcaagtttctgtggatgctcctgacagcaaatctgaaagtagcaacaatagaatgaatgcttggggcaccataaactcttcatcaaatggagggttaaatccaagcactttgaattcaaatggcaaccatggtgcctggcctgtattggagaacaatggacatgccctgaaagggtctgtagggagtggtaattctggcacaaatattcagtgcagtaccgtaggtcagatatctaacagtcagagtattaactctaaagtgggtggttcagcccatggttcctggggaagccttcaggaaaattgtgattctgaagtaaatggtacaaggaaggtttcattcagtgggcaacctcaaaaccttaacactgaaatgaatggaccaaataacactactaactttatgacctctagtttaccaaactctgctggttcagcgcagattaacgaactgcctaataatacagggcatggggcctggcgtgtgagcacaatgaatcattctcagattcaggcctctccagttacaaatggcacttccatttctcaccttagcaatggtgaggcgaaaaatggtggatcttatggtactacatggggtgcctatggttctaattactctggagacaaatgttcaggccccaacagccaagctaatggtgacactgtgaatgcaactctaatgcagtcaggcattagtgggcctggcagcactaactttcaaatcaacgggaataaaggaggaggggtgtgggaagcagggacagtcaactcccagaatatgccatggggaagtggaaatggtgcaagtgctggcggaagtagaagaggatggggcaaccctgcacaaaacactggcactaatatttcaaatggtgaatggagtaaactgcctagtaatcagcattccaatgaaagtgtaaatggaaataccaggaagtttacaaatggatggaaatctactgaagaggatgaccttaacagccagagttctgctgtgtctcaaataactgagcagaatagtgcgtgggccaaaacaggtacaggggacggtgaaggtagtacagagagcactggatgccatgaagatagagtagctacagaaggccagaatcgagagagaagaaaagttgaccagcatgcattactccaaagtatagtaaacagaactgacttagatccacgtgtcctttccaattctggttggggacagactccaatcaaacagaacactgcctgggataccgaaacatcaccaagaggtgaaagaaaaactgacaatgggacagaggcctggggaggctctgtgacacagacttctagctcagggggatgtgtggatagacctagccctaataataatgatacctcatctgtatcagggtggggagatccaaagtctgctacaaggtggggagactccaaagggtcaaatagccaaggggggtgggaagaggattctgctgctacagtaatggtcaagagcaatcaatcatggggaagtggcaaagaggaaaagtcatcttggaatgacacgcagaagatgaaacagggatgggtagaaggacaaaaggccagccagggttgggctgtttctgccagtgacagctggggtgaaaattcaagaagtaaccattggggtgagactaagaaatccagttcaggaggtagcgacagtgacagatcagtatctggttggaatgagccaggtaaatcaaattctgttacttggggaggtagtaataatacaaacccaaataattcttcaggatgggatgagcctgcaaagtctaatcagagccagggctggggagaccctcctaaatccaatcagcctcaaggctggggagattcttcaaagccaatcaactctccagaatggaacaaacaagacgttggatcttggggagcaccgtctgccaccaataaaccaccgggctcaggctggctggggggaccgatgccagccccagtgaaggaggaggaacccactggctgggaggagccatcccctgaatcaatacggcgcaaaatggaaattgatgatggaacttctgcttggggtgatccaagcaaatacaactacaaaaatgtgaacatgtggaataaaaatgtcccaaacagtagcagcagttcagaccagcaagcacaggtacatcagcagctactgtcttcaagtgccatgtctagcaaggagagcagttcgggttctggttggggagagccttctactccagccactactgtagataatggaacttcagcgtggggtaagcccatggatactggtactagctggggagaacccatcagcgatgcaggaggcacctctggctggggaaacgcttctcttggtcaacaggctccaaataaacctgggcctaaatctatgcaagatagttggtgtggagatgatatgccattgacaggcagtcgtcagaccagctgggaggaagaagaggatgtagagattggaatgtggaacagcagttcttcacaagaagctaacacatctttgaactggccaccctatatgaagaaaatgcccacaaagggaataatgaaaggtggaaataagcaagatgaagcatggatcaatccattcattaagcaattcacaaatctcagtttttcaagagaatcaccagaagaaaccatacagagcaataagatggacgtgtctggagggatattacaagataagagaatggagattgataagcatggcctcaatgttggagattacaatcgtgtggttggaaaaggccctggttctcgtcctcagatttccaaagagtcttccatggatcgcagtccttattttgataaggatggcattgtagcagacgagtcccaaaacatgcagtttatgtccaatcaaaacatgaagcttcccccttcaaatagtgcactacctaaccaagcccttggctctctggcagggctgggtatgcaaaacttgaattctgttagacagaatggcaatcccagtgtgtttggtgttggtaatatagcagcacagcccaggagcatgcagcagcctccagcacaacctcttaattcatctcagcctaatccacgtgctcaagtgcctcctccattactatcccctcaggttccggtatcattactgaagtatgcaccaaacaacggtggcctgagcccactttttggcccacaacaggtagccatgttgaatcaactgtcccagttaaaccagctttctcagatctcccagttacagcggttgttggctcagcagcaaaaagtgcagaatcaaagaagcatgccttctggtggtcgtcaacagcaggagcaacagggtcgatctattagtatgcagcaacagatgatgcaacagtcccgtcagcttgatccaaacctgttaatgaagcagcaaactccaccctctcaacagcagtcactccatcaacccaccatgaaatctttccttgagaatgtcataccccatgctactcctgagctacagaaagggccatcaccaataaattcattcagcagctttcctataggcttcagtccaatttctacttcagaaattccaggaatgaactcaaacttgaatgtaaacatggatatgagcagtattaaagagccaccacaatctcgattgaggaaatggactacagtagacagcatttctgtgaacacatccttagagcaaaactccagcaaacatggtgctatttcaagtggttttaggctggaagagtctccgtttgttccatatgactttatgaacagcagtacttcaccagccagtcctcctggatctattggagatggctggccccgtgccaaatcgcctaatggctctagcagtgttaactggccaccagaatttcgtcctggtgagccatggaaaggttatccaaacatcgaccctgaaactgacccttacgtcactcctggcagtgtcataaacaatctttcaattaatactgtgcgggaagttgaccacctcagggacaggaacagtgggtcatcctcatctttgaacaccacgctgccttcaactagtgcctggtcatccattcgtgcctccaactacaatgtttccctcagcagtacagcacaaagcacttcagtagccagaaacagtgattccaaatcaacatggtctcctggatcagtcactaacacctctctggctcatgagctgtggaaggtccctttgccacctaaaagcatcactgctccgtcccgcccacctccagggctaacaggccagaaaccacctttgtccacttgggataattcccttcgtttgggtggaggatggggaaattctgatgccagatatacccctggttcaagctggggtgagagcagctcagggagaataacaaattggcttgttctaaaaaaccttacacctcagatcgatggctcaaccctgcgtactctgtgcatgcagcacggtccactaataacattccaccttaacctcccacatggtaatgctttggtccgttacagttcaaaagaagaggtagtgaaggcacaaaaatctctgcacatgtgtgttttagggaacactactattcttgctgagtttgccagtgaagaggagattagtcgcttctttgcacaaggccagtctctgactccgtctcctggctggcaatctcttggatccagccagaaccgactcggatccattgatggttcccattcgttctcaaaccgtaatgatctaaatcactggaatggtgctgggctgtcgggaactagcagtggagaccttcatggcacttcactttgggggagccccaactattccacgagcctgtggggcaccccgagcagcaatgacaccaggggaattagcagcccatcccccatcaacgctttcctttctgttgaccacctaggtggaggtggagagtccatgtaaccttttacttttttcaactaataaactgtgacctcaaaatgtaacaaagcagcactaatttggacttttcacctacagcaaggggggtcacctgtggaaacagttactttctgcacattttccactttgttttagcccaaaacatatcagtttgaatacttgaatcatgcaggccaatattataatgtgaaaaagtatatatttacacttccagatagtgctatccatataaaactgcttggaatgagctcatttgtgtatattcatcatgtttattctttgaattccttttttttttttttgcattttgctgatgatgttggagtatgagcttttttaactttgcactgaatgatgttctctctgtccaatcggcaatatcggggaggcagcagttcacgtgtaaatgtttactcaaggatgttcttaacaaacagtgtgcgctctctactatgccttgatgtatgcctaccttattgtggtattgtggcgtttaaagatcaagttatgatactgacttaggattatgaatgaaagtattgcaccagttttttcatgtataaaactaaagaatttagctctacagtttaaaaaactgtggccacagctgtgacttgcaacccagcctgcaagccaggggggtcctgcactttcaataggctttcaattttgttttgggggtgcccgtgtcgggacctccttgtttacagaatatttgtttttgttttttgagaaaaatgtttactcttccatcattttaaaaatttttaaaaagacaaaaaaaattgagaatgaaaaagatgctttctatctctgggaataatgaacagtgtttggccatgtccttttgttttctattcctgtatcctaaatcaaagagcatggctctcaggaaaaccagttccccagtaaaaactccttgtagtttcttataggaaaaaaaaaaaaactcaacttttagcactgatgatacttattgctctgtaagacttttctctgccaaaaaatacacgcttcgagctggagttggacattctgctttctgacgctgtctttttattagtgagtggtggtggtttgctaataacccgtagttatacgattcttttgtaatcccatcgagtggctgtttctgctcttgtgactgtgttaacgtttaactgtcgtaccttaaagccgaactgagtaactatgcatactgtaaccaagtgattgggcttacagaattgtttgttgtataaaagttttaaatgtttgaaaagttctcgcaaatactttcttgcaaatgtaacgagttacatctctttgccacaaaaggtattatataatgcttgtttagtcggtggattcaagactaggcaagggtaaaaattttaacagtgcagaaatcgccatcatttcattgccttgattctaactgtttgtgtccgaagatgcaaaagaagtcagtggcttttaactgtttacaaatagaatgtgattgtaaaatgtacagtttggttgtgtttgaattatgaagtttctccagatattaataaatcatgatgtttttggctgctcagcatataactgtctattttttgtgactttatttgtaggctgttttctatacgatgaaaatatcaaacgatatagctctgtatccccatagtttgatttttcttttagccttctgatttctttttttttttctttttatgaacaaatctgcattttatcctagcaaaactctccctcagcgtgcccactgtgagctgagaatctaagtgcagaaacctgcagcttgcttttccttttctatttgagcaccttcggaatcccgttgcccttcttatactcccgccaccccccgttcagacgccccccaccatttgtgcccggctagatgctcaagaggacacttgcaaataaggagagcattttggaaaataaactttaatgcttaaaacgtactggtgtttaaatttatacctcatttacattaatcatgacaaacaatgcagcagcgcttactttgtatttcacttcacagtggcttagcttgttctgaaatggctagagggcagaccatatatgtacatagtatgatgtgacttcaacaatctgttagcctttcttttccaattgccggatgtaagtcattaactctgttggatgccagcattgtgtgttattggacacttctctgtacctactcgctatgaacgacgctgtcccagcccaagctggctccccaagtctgctctgaccccggtgaaaccgttgcctgataatctttcaggactccgcatcgagtggaactgacatcacgcccgcgttgattgtattgtcaaagtgtttggacttctttcactgagcttgttacgtggaaataaaatgtggttggttttaaagctga
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@meso_cacase at
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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