2024-05-19 16:47:22, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_025155334 2271 bp mRNA linear VRT 01-MAR-2022 DEFINITION PREDICTED: Gallus gallus skin secretory protein xP2 (LOC112533470), transcript variant X1, mRNA. ACCESSION XM_025155334 VERSION XM_025155334.3 DBLINK BioProject: PRJNA698609 KEYWORDS RefSeq; includes ab initio. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052545.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Mar 1, 2022 this sequence version replaced XM_025155334.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 25% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..2271 /organism="Gallus gallus" /mol_type="mRNA" /isolate="bGalGal1" /db_xref="taxon:9031" /chromosome="14" /sex="female" /tissue_type="blood" /country="USA: Fayetteville" /lat_lon="36.0822 N 94.1719 W" /collection_date="20-May-2019" /collected_by="Nick Anthony" gene 1..2271 /gene="LOC112533470" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 mRNAs, 40 long SRA reads, and 88% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="CGNC:86109" /db_xref="GeneID:112533470" CDS 1..999 /gene="LOC112533470" /codon_start=1 /product="protein argonaute 14 isoform X1" /protein_id="XP_025011102.3" /db_xref="GeneID:112533470" /db_xref="CGNC:86109" /translation="
MGLGLGGGLGLSRGGLRGCVGRERGGGAAGHGQLPGLGARLGGLRLGSGGQGAGSRGRQRDAHVFARYSPNLGGGTRSGEGAAGRRPARCSRPAGRPGCLWPGALLPFRRRQRSVPQNGGCGKRREMSHPHEGQPSEPGRGSGAAAAPGTAAAAAAATGGLEGRSRSAGPGRGLPAASPQPPTPARSPARGALPPLLPSRAQRSFGPPRGRSSPGPLRTEARPGHLRPAARSGDAGLGRAASELGLAWKEAGEGCLCGKRQKSVNKAVPCPDTIVLQEPRAEDRVPTVAETDLRSCAEGEGKGAGEEVTPGRSRLRQSVKGDCAEGHRGGRH"
polyA_site 2271 /gene="LOC112533470" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
atgggactcgggctcggcggcggcctgggcctttcccgtggggggctgcggggctgcgtcgggagggaacggggcggaggagcggcggggcacgggcagctgccggggttgggcgcccgcctcggggggctgcggctgggctccggcgggcagggagcgggcagccgggggaggcagcgagacgcgcacgtatttgctcgctattcgcccaatctcggcggcggcacccggtctggggaaggggccgctggccgacgcccggctcgctgctcccggcccgcgggccgccccggctgcctgtggcccggcgctctgctgccgttccgccgccgccagcgctcagtgcctcaaaatggcggctgcggtaaacgccgtgaaatgtcacatccgcatgaggggcagcccagcgagccgggaagggggagcggcgccgcggccgcgccgggaacagcagccgccgctgccgccgccacaggagggctcgaggggcggagccgcagcgccgggcccggccgcggcctccccgcggcctccccgcagcctccgacacctgcgcgcagccccgcgcggggagcgctgccgccgctccttcccagccgcgcccagcgctcgtttgggcctccgcggggccgctcttcaccggggccgctccgcaccgaggcccggcccgggcacctccgtcccgcggcgcgcagcggagacgccgggctcggccgggccgcgtcggagttgggcctcgcgtggaaggaggcgggagaagggtgtttgtgtgggaagaggcagaagtctgtaaacaaggctgtgccctgcccggataccattgttttgcaagagcctcgtgcggaggacagagttcccactgtggcagagactgatctgcgttcctgtgctgaaggagaagggaagggtgcgggtgaagaagtaacgcctggccggtcccgcctgaggcagagcgtgaagggagactgcgctgaggggcaccgcggtgggcggcactgagcggcgcagcgcgcagttcgtggcggtgggaagcctgggctggaggaggacctggagggaactgcttaggactggagaaccgggcctcctgaagggcctggcagtgcaccccggcagacagtgctgctctgattgcgagtggataagtgatggagaagtttgtttgtttttccagcgtataaaaggagcgaatatcacacccagtctgggggacaggcctgccctgtctgggctctggttggtggtgtttcagcagcgcaggagtctgcagggtgggcaggacaggaaaataacatccccctgccttgggtagtaaaaatcctgggctgcaaggaggaaaaacagcggaggttggggatgtcagtgggaagatcagcctttaaaaagtcggtgtgatggtctgcctttcaagtactgctttctgacttttcacgttgttcctctcgattctcaaaagctgttcaaagaaaaataatttacaaaccttttcctgctattgacccggacaaaaatgtgataaatctgttgaacccgagcttccagtgaagggggggattaggatcaggattaggacagagatttatgcagagatctttggtttcttaatgtcctgaacttcgaattccccactgccagtctttccctaccattacctccctgaacaactgctctttcctaacgacttccattccagcctcctaaatcatgcacaggtttgaactcatccctccgtccatcctacacaagcgattcccaatacaggacagacgggtatgtcacaatgaggagggagctccagattactgctgattcttcagccgcgggcagcacggctgtagagaaggagcggcggaggaaaacaatttcactgttgcaaggaagaacaagtccctaaagacagccacaagccaatgttatcataagcactaaaacgctctagatagatatgaaagtttctctgtttcagtttgctgtaaggcagctgagttttccaaaatgattgggttctcctgctgttgtggaggagcagagatcaggcaaaagacagccccacagatcctctgctgtgcggagggcagcgcagaagaggggcagggatctccctgtaaggatggagcgccacaaccaagcgctgccctttctgcacagtcccactgtaggtgaactctgtcacagtccacacggaatgcagaatggctgtgagtaaaacaatctcaaaaatcggttcagctacatatacttacgagggaataaatgtagtgtgtataatta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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