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2024-05-19 16:47:22, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_025155334            2271 bp    mRNA    linear   VRT 01-MAR-2022
DEFINITION  PREDICTED: Gallus gallus skin secretory protein xP2 (LOC112533470),
            transcript variant X1, mRNA.
ACCESSION   XM_025155334
VERSION     XM_025155334.3
DBLINK      BioProject: PRJNA698609
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_052545.1) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 1, 2022 this sequence version replaced XM_025155334.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Gallus gallus Annotation Release 106
            Annotation Version          :: 106
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 25% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2271
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /isolate="bGalGal1"
                     /db_xref="taxon:9031"
                     /chromosome="14"
                     /sex="female"
                     /tissue_type="blood"
                     /country="USA: Fayetteville"
                     /lat_lon="36.0822 N 94.1719 W"
                     /collection_date="20-May-2019"
                     /collected_by="Nick Anthony"
     gene            1..2271
                     /gene="LOC112533470"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 40 long SRA reads, and
                     88% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="CGNC:86109"
                     /db_xref="GeneID:112533470"
     CDS             1..999
                     /gene="LOC112533470"
                     /codon_start=1
                     /product="protein argonaute 14 isoform X1"
                     /protein_id="XP_025011102.3"
                     /db_xref="GeneID:112533470"
                     /db_xref="CGNC:86109"
                     /translation="
MGLGLGGGLGLSRGGLRGCVGRERGGGAAGHGQLPGLGARLGGLRLGSGGQGAGSRGRQRDAHVFARYSPNLGGGTRSGEGAAGRRPARCSRPAGRPGCLWPGALLPFRRRQRSVPQNGGCGKRREMSHPHEGQPSEPGRGSGAAAAPGTAAAAAAATGGLEGRSRSAGPGRGLPAASPQPPTPARSPARGALPPLLPSRAQRSFGPPRGRSSPGPLRTEARPGHLRPAARSGDAGLGRAASELGLAWKEAGEGCLCGKRQKSVNKAVPCPDTIVLQEPRAEDRVPTVAETDLRSCAEGEGKGAGEEVTPGRSRLRQSVKGDCAEGHRGGRH"
     polyA_site      2271
                     /gene="LOC112533470"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
atgggactcgggctcggcggcggcctgggcctttcccgtggggggctgcggggctgcgtcgggagggaacggggcggaggagcggcggggcacgggcagctgccggggttgggcgcccgcctcggggggctgcggctgggctccggcgggcagggagcgggcagccgggggaggcagcgagacgcgcacgtatttgctcgctattcgcccaatctcggcggcggcacccggtctggggaaggggccgctggccgacgcccggctcgctgctcccggcccgcgggccgccccggctgcctgtggcccggcgctctgctgccgttccgccgccgccagcgctcagtgcctcaaaatggcggctgcggtaaacgccgtgaaatgtcacatccgcatgaggggcagcccagcgagccgggaagggggagcggcgccgcggccgcgccgggaacagcagccgccgctgccgccgccacaggagggctcgaggggcggagccgcagcgccgggcccggccgcggcctccccgcggcctccccgcagcctccgacacctgcgcgcagccccgcgcggggagcgctgccgccgctccttcccagccgcgcccagcgctcgtttgggcctccgcggggccgctcttcaccggggccgctccgcaccgaggcccggcccgggcacctccgtcccgcggcgcgcagcggagacgccgggctcggccgggccgcgtcggagttgggcctcgcgtggaaggaggcgggagaagggtgtttgtgtgggaagaggcagaagtctgtaaacaaggctgtgccctgcccggataccattgttttgcaagagcctcgtgcggaggacagagttcccactgtggcagagactgatctgcgttcctgtgctgaaggagaagggaagggtgcgggtgaagaagtaacgcctggccggtcccgcctgaggcagagcgtgaagggagactgcgctgaggggcaccgcggtgggcggcactgagcggcgcagcgcgcagttcgtggcggtgggaagcctgggctggaggaggacctggagggaactgcttaggactggagaaccgggcctcctgaagggcctggcagtgcaccccggcagacagtgctgctctgattgcgagtggataagtgatggagaagtttgtttgtttttccagcgtataaaaggagcgaatatcacacccagtctgggggacaggcctgccctgtctgggctctggttggtggtgtttcagcagcgcaggagtctgcagggtgggcaggacaggaaaataacatccccctgccttgggtagtaaaaatcctgggctgcaaggaggaaaaacagcggaggttggggatgtcagtgggaagatcagcctttaaaaagtcggtgtgatggtctgcctttcaagtactgctttctgacttttcacgttgttcctctcgattctcaaaagctgttcaaagaaaaataatttacaaaccttttcctgctattgacccggacaaaaatgtgataaatctgttgaacccgagcttccagtgaagggggggattaggatcaggattaggacagagatttatgcagagatctttggtttcttaatgtcctgaacttcgaattccccactgccagtctttccctaccattacctccctgaacaactgctctttcctaacgacttccattccagcctcctaaatcatgcacaggtttgaactcatccctccgtccatcctacacaagcgattcccaatacaggacagacgggtatgtcacaatgaggagggagctccagattactgctgattcttcagccgcgggcagcacggctgtagagaaggagcggcggaggaaaacaatttcactgttgcaaggaagaacaagtccctaaagacagccacaagccaatgttatcataagcactaaaacgctctagatagatatgaaagtttctctgtttcagtttgctgtaaggcagctgagttttccaaaatgattgggttctcctgctgttgtggaggagcagagatcaggcaaaagacagccccacagatcctctgctgtgcggagggcagcgcagaagaggggcagggatctccctgtaaggatggagcgccacaaccaagcgctgccctttctgcacagtcccactgtaggtgaactctgtcacagtccacacggaatgcagaatggctgtgagtaaaacaatctcaaaaatcggttcagctacatatacttacgagggaataaatgtagtgtgtataatta
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]