LOCUS       XM_015295279            8678 bp    mRNA    linear   VRT 01-MAR-2022
DEFINITION  PREDICTED: Gallus gallus trinucleotide repeat containing 6C
            (TNRC6C), transcript variant X6, mRNA.
ACCESSION   XM_015295279
VERSION     XM_015295279.3
DBLINK      BioProject: PRJNA698609
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_052549.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Mar 1, 2022 this sequence version replaced XM_015295279.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Gallus gallus Annotation Release 106
            Annotation Version          :: 106
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8678
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /isolate="bGalGal1"
                     /db_xref="taxon:9031"
                     /chromosome="18"
                     /sex="female"
                     /tissue_type="blood"
                     /geo_loc_name="USA: Fayetteville"
                     /lat_lon="36.0822 N 94.1719 W"
                     /collection_date="20-May-2019"
                     /collected_by="Nick Anthony"
     gene            1..8678
                     /gene="TNRC6C"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 6 mRNAs, 7 ESTs, 1085 long SRA
                     reads, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 79 samples
                     with support for all annotated introns"
                     /db_xref="CGNC:1210"
                     /db_xref="GeneID:417348"
     misc_feature    1
                     /gene="TNRC6C"
                     /experiment="COORDINATES: cap analysis [ECO:0007248]"
                     /note="transcription start site"
     CDS             430..5466
                     /gene="TNRC6C"
                     /codon_start=1
                     /product="trinucleotide repeat-containing gene 6C protein
                     isoform X6"
                     /protein_id="XP_015150765.2"
                     /db_xref="GeneID:417348"
                     /db_xref="CGNC:1210"
                     /translation="

MATGSAQGNFTGHTKKTNGNNGANGALVQSTSNQSALGAGGANGNGSSARVWGMAAGSGSGLAHCSASGGDGKMDNMIGDGRSQNCWGASNSNAGINLNLNPNANPAAWPVLGHEGTVGAGNPSSICSPVSAIGQNMGNQNGNPTGTLGAWGNLLPQESTEPQTSTSQNVSFSVQPQNLNTDGPNNTNPMNSSPNPINAMQTNGLPNWGMAVGMGAIIPPHLQGLPGANGTSVSQVSGGSGEGMGGSVWGMSPGNPATGNSNSGFSQGNGDTVNSALSAKQNGSSSAVQKEGNGASAWDSGPPSGPGVLAWGRGGGNGGVGSMHSGAWGHPNRNASNGVNGEWVKPPNQHSNSDINGKGSAGWDSSSVTSPNPAMQQGNEQMNSWAKAAASGTTASEGSNDSGGSQNEGSSGREGAAEGRRRDKGMIDQGQVQLPRNDLDPRVLSNTGWGQTPVKQNTAWEFEESPRSERKNDNGTEAWGCAATQSSNSGGKNDGSIMNSTNTSSVSGWVNSPPAAVPTNTGWGDNNNKAPNGPGGWGESASSTTVNNAAAAKSGHTWSGTANQEDKSPTWGEPQKPKSQNWGDGQKSNPSWTSGGGDWTDSSSVPGHLGDGKKNGSGWDSDNRSGSGWNDSTRSGTSGWGNGTNSKANTGTSWGESLKPGPQQNWANKPQDNSVSNWGGAASVKQTGSGWVGGPVPAKQKENCEATGWEEPSPPSIRRKMEIDDGTSAWGDPNYNNNKTVNMWDRNNPIIQSSTTTNTTTTSTIINTNMVEPQPSHQSSAQPNRSPLLGPAGWGEMPNVHTKSEASWGEPSSPSAAVDNGTSAWGKPPSSGTGWGESPAEPAGTYGRTAAPTAAPALCKPASKSMQEGWGSGGDEVNLSTSQWEDEEGDMWNNTASQESSSSCNSWGNAPKKGLQKGMKTSSKQDEAWIMNRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKKVEMDKRGMGVTDYNGMVTKPLGCRPPPISKESSMDRPTFLDKDGGLVEEPTTSPFLPSPSLKLPLSNSALPNQTLGGIASGLGMQNLNSSRQIPSGNLGMFGNSGAAQARTMQQPQQPPVQPLNSSQPSLRAQVPQFLSPQVQAQLLQFAAKNIGLNPALLTSPINPQHMTMLNQLYQLQLAYQRLQIQQQMLQAQRNVSGPMRQQEQQVARTINNMQQQIQQHQRQLAQALLMKQQPPPPHLSLHPSAGKSAMDSFSPHPQAPGLPDLQTKEQQSSPNTFAPYPLAGLNPNMNVNNMDITGGLSVKDTSQSQSRLPQWTHPNSMDNLSSAASSLDQNSSKHGAIPGGLSIGPPGKSSIDDSYGRYDLIQNSESPASPPVAVPHSWSRAKTDSDKISNGSSINWPPEFHPGVPWKGLQNIDPENDPDVTPGSVPTGPTINTTIQDVNRYLLKSGGKLSDIKSTWSSGPISHTQASLSHELWKVPRNTTAPTRPPPGLTNTKPSSTWGASPLGWTSSYSSGSAWSTDSSGRTSSWLVLRNLTPQIDGSTLRTLCLQHGPLITFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRFLAQGQPLPPTSSWQSNAGSTQPRLGSAGSHGLVRGDAGHWNSPCLGGKGSSELLWGGVPQYSSSLWGPPSADDGRVIGSPTPLNTLLPGDLLSGESI"

     misc_feature    <1762..>2403
                     /gene="TNRC6C"
                     /note="serine-rich protein; Region: ser_rich_anae_1;
                     NF033849"
                     /db_xref="CDD:468206"
     misc_feature    2884..3216
                     /gene="TNRC6C"
                     /note="Argonaute hook; Region: Ago_hook; pfam10427"
                     /db_xref="CDD:463088"
     misc_feature    3223..3336
                     /gene="TNRC6C"
                     /note="UBA domain found in trinucleotide repeat-containing
                     gene 6C protein (TNRC6C) and similar proteins; Region:
                     UBA_TNR6C; cd14283"
                     /db_xref="CDD:270469"
     misc_feature    3463..4143
                     /gene="TNRC6C"
                     /note="M domain of GW182; Region: M_domain; pfam12938"
                     /db_xref="CDD:432890"
     misc_feature    4168..4932
                     /gene="TNRC6C"
                     /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg;
                     pfam16608"
                     /db_xref="CDD:465195"
     misc_feature    4918..5181
                     /gene="TNRC6C"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     trinucleotide repeat-containing gene 6C protein (TNRC6C);
                     Region: RRM_TNRC6C; cd12713"
                     /db_xref="CDD:410112"
     polyA_site      8678
                     /gene="TNRC6C"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

gggcagcagccagccgcgtcccgctacctgccccgcgaggtgcctccacgcttccgccagcaagaacagaagcagctcttaaagagagggcagccgctgcccaccgggactctgagcagcagcccggcacaaggcactgggccagcaggggcgagtcctcccccgcagccaggggcgggaggacagcatcatcccagtaagacccaagcagatctcagtcacagtggattgggagaccattatgaaaattcccactggggacagcagcccactttcaggagtgaaggcaactgcagctgggataaagtgataatagacaggactgacaaggaagcgtggccttccatcacaggagctgagactgaatctgcctcagaatgtactacagacactgactctgcctccaactgtggctcagagaacagtagcatggctacagggagtgcccaaggcaacttcactggacatacaaagaaaactaatggcaataatggcgccaacggagcactcgtccaaagcacttctaaccagagtgcccttggagctggtggagccaacggtaacggcagctcggccagagtgtggggcatggctgcaggctctggctctggcctagctcactgctctgccagcggtggggatggcaagatggacaacatgattggagatggtagaagtcaaaactgctggggtgcttccaactcaaatgctggcattaatcttaaccttaaccctaatgccaatccagctgcctggcctgtacttggacatgagggaactgtgggagcaggcaacccttccagtatttgcagtccggtcagtgccataggtcagaacatgggcaaccagaatgggaacccgacaggcactttaggtgcttggggaaacttgctgccgcaagagagcacagaaccacaaacgtccacttctcagaatgtgtctttcagcgtacaacctcagaaccttaacactgatggaccaaataacactaaccccatgaactcttcaccaaaccctatcaatgcaatgcagacaaatggactgccgaactgggggatggctgttggtatgggggccatcatcccgccccacctgcaaggccttcctggtgctaatggaacatcagtttctcaagtcagtgggggcagtggtgaaggaatgggcggttcagtttgggggatgtccccaggtaatcctgccacaggaaacagcaattctgggttcagtcaggggaatggagacactgtgaactcagcattaagtgctaaacaaaacggatccagcagtgctgtgcaaaaggaaggaaatggagcgagcgcgtgggattcggggcctccgtctggccctggggtgctggcgtggggcaggggcggtggcaacggcggtgttggtagcatgcattctggagcttggggccaccccaaccgtaacgccagtaacggtgtcaatggcgaatgggtcaagcccccgaaccagcattccaatagcgacatcaatgggaaaggatcagcggggtgggatagctctagtgttaccagcccgaatcctgccatgcagcagggcaatgaacaaatgaactcttgggccaaagctgcagcgtctggcaccacagctagcgaaggaagcaatgacagcggtggaagtcaaaatgaaggcagtagtgggagggaaggggctgcggaaggcaggaggagagacaaagggatgatagaccaagggcaagttcagttgccaagaaatgaccttgaccccagggtcctgtccaatacagggtggggacagacccctgtaaagcaaaacactgcctgggaatttgaagagtccccgaggtccgaacgaaagaatgacaatggaacggaggcctggggttgtgcagctactcaatcttcaaactcaggggggaagaacgatgggtccatcatgaacagtacaaatacctcttcagtatctgggtgggtcaactctccacctgcagctgttccaacaaatacaggttggggagacaataacaacaaagcaccaaatggcccaggggggtggggagagtcagcaagctctactactgttaataatgctgctgctgccaaaagcggccacacttggagtgggaccgcaaatcaggaggacaaatcacctacctggggtgaacctcagaaacccaaatctcaaaactggggagacggacagaaatcaaatccaagctggacttcgggaggtggagattggacagattcatcgtctgttcctggacacttgggtgatgggaagaagaatggatctggatgggattctgacaataggtcagggtctggatggaatgattccacgaggtctgggaccagtgggtggggaaatggcacaaacagcaaggctaatacaggtacaagttggggggaatctttaaagccaggcccccaacaaaactgggctaataaaccccaggacaacagtgtgagtaactggggaggagctgcttctgtaaaacagacgggctcggggtgggttggtgggccagtgccagccaaacaaaaagagaactgtgaggcaactggctgggaagagccatctccaccgtccattcgccgcaagatggagatcgatgatggtacctcagcttggggcgacccaaattacaacaacaacaagactgtaaacatgtgggatagaaataatcctatcatccagagcagtaccacaaccaataccaccaccactagcaccattatcaacaccaacatggttgaacctcagccatcgcaccagtcaagtgcccagccgaaccggtccccgctgcttggtccagcaggctggggagaaatgcctaacgtccacacgaagagcgaagcttcttggggagagccgtcctccccttctgctgcagtcgataacggcacgtcggcgtgggggaaaccccccagcagtgggacggggtggggagagagccctgctgagccggcggggacctacggcagaacggccgctccaactgctgccccagcactgtgcaaaccagcttcaaaatctatgcaagaaggctggggcagtggtggggatgaagtgaatctcagtactagtcagtgggaagatgaagaaggagatatgtggaataatactgcttcacaagaaagcagctcctcctgtaattcctgggggaacgccccaaagaaaggacttcagaagggcatgaagacatctagcaagcaagatgaggcctggatcatgaaccgcctgataaaacagctcacagatatgggcttccctagagaaccagcggaagaggccttgaagagcaacaatatgaatctcgatcaggccatgagtgctctgctggaaaagaaggtggaaatggacaagcgtggaatgggagtgaccgactataatggaatggtcaccaaaccccttggctgccgcccaccaccaatctccaaagagtcttccatggaccgccccaccttccttgacaaggatggcggcctagtggaagagcccactacttcaccatttttgccttcaccaagcctgaagctccccctttcaaacagtgcactccctaatcagaccctgggcgggattgcctcagggctgggcatgcaaaacttgaattcttctcgacagataccgagtggcaatctgggtatgtttggcaatagcggagcagcacaagccaggaccatgcaacagccgcagcaaccgccagtgcaacctcttaattcatcccagcctagtcttcgtgctcaagtgcctcagtttctatcccctcaggttcaagcacagcttttgcagtttgcagcaaaaaacattggtctcaaccctgcactattaacctcgccaattaatcctcagcatatgacgatgttgaaccagctctatcagctgcagctggcgtaccaacgtttacaaatccagcagcagatgttacaggctcagcgtaatgtttccggacccatgagacaacaggagcagcaagttgcacgtacaatcaataacatgcagcagcagatccagcagcaccagcgccagctggcccaggccctgcttatgaagcagcagcctccccctccacatctatctttgcacccctctgcaggcaaatcagccatggatagcttttcaccccatccccaggctcccggccttcctgacctgcagaccaaagagcaacagtcttcaccgaacacctttgctccttaccctcttgctggactgaacccgaacatgaatgtaaataacatggacattactggtggtttgtcagtgaaggacacttctcagtcccagtctcgccttcctcagtggacacaccccaactcaatggataatctgtctagtgctgcttcttctcttgaccagaactccagcaagcacggtgctatacctggaggtttaagtattggtcctccgggaaagtcctccattgatgactcttacggccggtatgatctgattcagaacagtgagtcgcccgccagcccacccgtagctgttcctcacagctggtcacgtgccaaaaccgatagtgataagatctccaacggctccagcataaactggccaccagaatttcatccaggagtgccatggaaaggactacagaatattgatcctgaaaatgaccctgatgttactcctggaagtgttccaaccgggcccaccataaacaccacgatacaggatgttaatcgctatctcctcaagagtggaggtaaactgtcagacatcaagtctacgtggtcctccggcccaatctcccacacacaagcctctctgtcccatgaactatggaaggtacccagaaacactacggctcctaccagaccacctccgggcttaaccaacaccaagccatcatcgacgtggggtgccagtcccctgggctggaccagctcttactcctctggttctgcatggagtactgacagctcagggaggacgagcagctggctggttcttcgcaacctcacgccccagattgatggctccacactgcggacgctgtgtttgcagcatggccctctaataacattccacctgaacctgacacaagggaatgctgtggtccgatacagttccaaggaagaagcagccaaggcccaaaagtctctgcatatgtgtgtcctgggaaacactaccatcctggccgagttcgccggcgaggaggaggtgaaccgcttcctagcgcagggccagccgctgccgcccacctccagctggcagtccaacgccggcagcacgcagccacgcctgggctcggccggctctcacgggctggtgaggggcgacgcggggcactggaacagcccctgcctggggggcaagggcagcagcgagctgctgtggggcggcgtgccccagtactccagcagcctctggggaccccccagcgccgacgacggccgagtgatcgggagccccacgcctctgaatactcttcttccgggggatcttctcagcggggagtccatctaggaagcggagaggaaccgagtggaaatcacaatcatcagcactaaaaggaaacataaagttgtaaccctttccagtcccgggcttgatgaagaatccagctttaaccgatcagactggcagccctgttggtttttttttagtacctctgtccaatatcgactatgaaactgcagaagtccttgtgaactgttaatgcaacagtatgggctccttttggtcagtgtcacgtgctaatgacaggttatatttttttcatggctttttgttttatgtcgtctttttatgtttgtatggtgattttaaagacaaactataaaagctgcttagaataggtctatcatgaagggcacttttcagaatttgggctggaaagggttattttatcaacgtgggagggggggtgggggggaggggaaggggaaatgaaagcctatttaaaacgagcctgtgactattatgcacattaccagaggcggacccaataatcagaaagggtgaagtgtgatatttaccattggtacagacaagcgatgaatctgaatggtaactattgactgtacaggttggagggggaggggggcgggctggggtatctgtgtccactactcccatggatctgcctatgcacattaccctgtttcattatttctcatgtcgtttttgttaacccctcccccccctccaaaaaaaaaaaaaaaaaaggaaaaaaaaagaaaaaaaaaaaggacaaaacagaaaaagtttaaaaaaaaaaaaaaaagaacatatcaaacatgcaaatacttgaatccagcaggccaataacaaaatgtgaacacttgctatgtctgatgattacacttccaggttggcatcagtacaccgagacagcaaacaggctctaaggatttgtttgtaaaggttcggatgttctgctttcgtttgagcgggtgtgagtgtgtatgtgagtgtgtgtgtgagtgtgtatgtgagtatgagtgtgtgtatgtgagcgtgagagagcgtgtgagtgtatacgtgtgtgtatgagtgtgtgacagtgtgagtgtgcatgtgactgagtgtatgtgtgtgagctgagtgagtgtgagtgactgtgtatgtatatgtgagtgtgtgtgagtgtgactgtgtatgtatgtgtgagtgtggccgtgtatgtgcgtgtgcccacgcgtggtttaacagaagcgtgtagtgttctccttctatccagtatcagcttttgatttgctcattggtcagatgtttaattgctattagcttctaactttgcactgagtgtccgcagcccttctggtagctcatcctacaatgtaaaggaaaaacaaggaaggaactgatagaaggggccggcgacaattcacgtgtaaatgtttactcaaggactcttagcgcattctagaagtgacagtgtgcgtctctggggaatcacacctgcatctcccttgggcggctttgtgtcgtggaatgcaaggaaaggattcccggagcgtcgcaccgttggtccatttgggatataaagctgaagaagaaactcctctcgttgaactgtggccatagagaactgtaaagagcggatggttcccttgcaagcaggaacagaaacaagcacttggacgtggggtttgactgcttttggcagagccgggcgttcggctctcacctgtttacagacctttttttttgtttttggttttttttttttttttcctccttcaaactttaaaataataaaaaaaaatttaaaaaatttaaaaaaaaaaaaagaactttaaaaaaaaaaaaaaacaaaacaaaaagagagagacttccatcgtaaagaaaacttattttcagaatgaagatatgctacttcagagctctgggattgaacagtgttgttgtatgattcttttctttggccattgctgtgtactgttctcgttgttgttttcctcctcccgtcggcgcggcgaggcgttgtggtcactcttgcacatggtggaagatgtctcaggaaagccgggtttcccgaggagcaactccacaccatttcatgtatttttaaaacccaactcctagcactgaagatattattaaaaaataattaaaaaaaaaataataaaaaaattaaaaagacagttaagaaagaagaaaatacctaatctaatgtgtagcagttacatatttaccaaataatggactcaaaaagaaatagatgtttgaagagtgctttatatattaaaagaaaaaaaacaaacaaacaaaaaaaaaaagaattgctttatgtttaacagaaaaaaaaagaaaaaaaaaaaaacaaaaacagatcaatgcttttgattgttttgaaaggaagaaagacaatgggacggcatacgcctggggtatgtcctgagaggttatggacattgtgctccctgcctgcttggatcaggaaacttgtgcattacatttgatttcctttcttctccgttgttgtcgttgtcgttgtcgttgttgttgctttttctttggaagatgagctttttaatggttttatccgatgtaaaaggggtcctgcaagattgcaaattaacaaaagctggttttatagcggatcatgaactatgcacaaaactgggttcgagacttgttctttcgttctcgaggttccgtagtgtatttagctccattacctttcctcagagtaattgcatctcgctgccaccgcgcacccactgcacacagagatattttatatctctctccacacactctcatataagatatgtatgtgtgtctgtgcgggctgacatacggttttccatgctgaactttagcattgagttgtagaactcgtggtcttttgaaacggggaaggaacatttctgttactggggggggtgggagggggggttgggctttgattttggggggctttttggttttttgttttgttttcttttttgtttgggggtttttttgtttttgtttttgttttttttgccttttggattaaagatgtctgtaactctgagattaaatggaaaaaaaaaaggaaaaaaaaaacaacaaaagaaaaaaaacttaaaaaaaaaaaaacaaaacaaaaaccaacagaacacgtggctttcaatgttatctctcctcatagaatgtgattgtccaagaacatgcaccgaaagttgctttcaagagtacgaagattctttggaaactaaataaattgcagttgtttttttggggtt

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