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2024-05-04 17:48:05, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_204361               5044 bp    mRNA    linear   VRT 10-NOV-2023
DEFINITION  Gallus gallus KIT proto-oncogene, receptor tyrosine kinase (KIT),
            mRNA.
ACCESSION   NM_204361
VERSION     NM_204361.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 5044)
  AUTHORS   Tang H, Finn RD and Thomas PD.
  TITLE     TreeGrafter: phylogenetic tree-based annotation of proteins with
            Gene Ontology terms and other annotations
  JOURNAL   Bioinformatics 35 (3), 518-520 (2019)
   PUBMED   30032202
REFERENCE   2  (bases 1 to 5044)
  AUTHORS   Yang P, Yu Z, Gandahi JA, Bian X, Wu L, Liu Y, Zhang L, Zhang Q and
            Chen Q.
  TITLE     The identification of c-Kit-positive cells in the intestine of
            chicken
  JOURNAL   Poult Sci 91 (9), 2264-2269 (2012)
   PUBMED   22912461
  REMARK    GeneRIF: study reveals the distribution of interstitial cells of
            Cajal, quantifies the expression of c-Kit mRNA in the intestine of
            adult chicken, and also compares the c-Kit-positive cell types
            morphologically
REFERENCE   3  (bases 1 to 5044)
  AUTHORS   Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C,
            Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S.
  TITLE     Manual GO annotation of predictive protein signatures: the InterPro
            approach to GO curation
  JOURNAL   Database (Oxford) 2012, bar068 (2012)
   PUBMED   22301074
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 5044)
  AUTHORS   Sasaki E, Okamura H, Chikamune T, Kanai Y, Watanabe M, Naito M and
            Sakurai M.
  TITLE     Cloning and expression of the chicken c-kit proto-oncogene
  JOURNAL   Gene 128 (2), 257-261 (1993)
   PUBMED   7685729
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from D13225.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: D13225.1, SRR13267655.50918.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA103992290,
                                           SAMEA103992323 [ECO:0006172]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..5044
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="4"
                     /map="4"
     gene            1..5044
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="KIT proto-oncogene, receptor tyrosine kinase"
                     /db_xref="CGNC:10414"
                     /db_xref="GeneID:378783"
     exon            1..68
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /inference="alignment:Splign:2.1.0"
     CDS             2..2884
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /EC_number="2.7.10.1"
                     /note="c-kit; proto-oncogene tyrosine-protein kinase Kit;
                     proto-oncogene c-Kit; mast/stem cell growth factor
                     receptor Kit; v-kit Hardy-Zuckerman 4 feline sarcoma viral
                     oncogene homolog"
                     /codon_start=1
                     /product="mast/stem cell growth factor receptor Kit
                     precursor"
                     /protein_id="NP_989692.1"
                     /db_xref="CGNC:10414"
                     /db_xref="GeneID:378783"
                     /translation="
MEGAHLAWELAHAVLLLSLIPAGGSVPHEESSLVVNKGEELRLKCNEEGPVTWNFQNSDPSAKTRISNEKEWHTKNATIRDIGRYECKSKGSIVNSFYVFVKDPNVLFLVDSLIYGKEDSDILLVCPLTDPDVLNFTLRKCDGKPLPKNMTFIPNPQKGIIIKNVQRSFKGCYQCLAKHNGVEKISEHIFLNVRPVHKALPVITLSKSYELLKEGEEFEVTCIITDVDSSVKASWISYKSAIVTSKSRNLGDYGYERKLTLNIRSVGVNDSGEFTCQAENPFGKTNATVTLKALAKGFVRLFATMNTTIDINAGQNGNLTVEYEAYPKPKEEVWMYMNETLQNSSDHYVKFKTVGNNSYTSELHLTRLKGTEGGIYTFFVSNSDASSSVTFNVYVKTKPEILTLDMLGNDILQCVATGFPAPTIYWYFCPGTEQRCLDSPTISPMDVKVSYTNSSVPSFERILVESTVNASMFKSTGTICCEASSNGDKSSVFFNFAIKEQIRTHTLFTPLLIAFGVAAGLMCIIVMILVYIYLQKPKYEVQWKVVEEINGNNYVYIDPTQLPYDHKWEFPRNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICPKHEEHAEAAVYENLLHQAEPTADAVNEYMDMKPGVSYAVPPKADKKRPVKSGSYTDQDVTLSMLEDDELALDVEDLLSFSYQVAKGMSFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIRNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWELFSLGSSPYPGMPVDSKFYKMIKEGYRMFSPECSPPEMYDIMKSCWDADPLQRPTFKQIVQLIEQQLSDNAPRVYANFSTPPSTQGNATDHSVRINSVGSSASSTQPLLVREDV"
     sig_peptide     2..73
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="/evidence=ECO:0000255; propagated from
                     UniProtKB/Swiss-Prot (Q08156.1)"
     mat_peptide     74..2881
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /product="Mast/stem cell growth factor receptor Kit.
                     /id=PRO_0000016756"
                     /note="propagated from UniProtKB/Swiss-Prot (Q08156.1)"
     misc_feature    89..277
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:448366"
     misc_feature    122..136
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    149..163
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    227..229
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="N-linked (GlcNAc...) asparagine.
                     /evidence=ECO:0000255; propagated from
                     UniProtKB/Swiss-Prot (Q08156.1); glycosylation site"
     misc_feature    251..268
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    341..580
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="Immunoglobulin like; Region: IG_like; smart00410"
                     /db_xref="CDD:214653"
     misc_feature    404..406
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="N-linked (GlcNAc...) asparagine.
                     /evidence=ECO:0000255; propagated from
                     UniProtKB/Swiss-Prot (Q08156.1); glycosylation site"
     misc_feature    446..448
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="N-linked (GlcNAc...) asparagine.
                     /evidence=ECO:0000255; propagated from
                     UniProtKB/Swiss-Prot (Q08156.1); glycosylation site"
     misc_feature    473..487
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    515..532
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    557..568
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    614..874
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="Immunoglobulin domain; Region: ig; pfam00047"
                     /db_xref="CDD:395002"
     misc_feature    653..667
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409353"
     misc_feature    695..709
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409353"
     misc_feature    776..790
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409353"
     misc_feature    806..808
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="N-linked (GlcNAc...) asparagine.
                     /evidence=ECO:0000255; propagated from
                     UniProtKB/Swiss-Prot (Q08156.1); glycosylation site"
     misc_feature    818..835
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409353"
     misc_feature    857..868
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409353"
     misc_feature    857..859
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="N-linked (GlcNAc...) asparagine.
                     /evidence=ECO:0000255; propagated from
                     UniProtKB/Swiss-Prot (Q08156.1); glycosylation site"
     misc_feature    890..1192
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="Fourth immunoglobulin (Ig)-like domain of stem cell
                     factor receptor (SCFR); member of the I-set of IgSF
                     domains; Region: IgI_4_SCFR; cd05860"
                     /db_xref="CDD:409446"
     misc_feature    890..910
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="Ig strand A [structural motif]; Region: Ig strand
                     A"
                     /db_xref="CDD:409446"
     misc_feature    917..919
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="N-linked (GlcNAc...) asparagine.
                     /evidence=ECO:0000255; propagated from
                     UniProtKB/Swiss-Prot (Q08156.1); glycosylation site"
     misc_feature    920..937
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="Ig strand A' [structural motif]; Region: Ig strand
                     A'"
                     /db_xref="CDD:409446"
     misc_feature    944..976
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="Ig strand B [structural motif]; Region: Ig strand
                     B"
                     /db_xref="CDD:409446"
     misc_feature    953..955
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="N-linked (GlcNAc...) asparagine.
                     /evidence=ECO:0000255; propagated from
                     UniProtKB/Swiss-Prot (Q08156.1); glycosylation site"
     misc_feature    986..1009
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="Ig strand C [structural motif]; Region: Ig strand
                     C"
                     /db_xref="CDD:409446"
     misc_feature    1013..1024
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="Ig strand C' [structural motif]; Region: Ig strand
                     C'"
                     /db_xref="CDD:409446"
     misc_feature    1013..1015
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="N-linked (GlcNAc...) asparagine.
                     /evidence=ECO:0000255; propagated from
                     UniProtKB/Swiss-Prot (Q08156.1); glycosylation site"
     misc_feature    1028..1030
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="N-linked (GlcNAc...) asparagine.
                     /evidence=ECO:0000255; propagated from
                     UniProtKB/Swiss-Prot (Q08156.1); glycosylation site"
     misc_feature    1031..1048
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="Ig strand D [structural motif]; Region: Ig strand
                     D"
                     /db_xref="CDD:409446"
     misc_feature    1067..1069
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="N-linked (GlcNAc...) asparagine.
                     /evidence=ECO:0000255; propagated from
                     UniProtKB/Swiss-Prot (Q08156.1); glycosylation site"
     misc_feature    1073..1102
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="Ig strand E [structural motif]; Region: Ig strand
                     E"
                     /db_xref="CDD:409446"
     misc_feature    order(1097..1108,1115..1117)
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:409446"
     misc_feature    1121..1147
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="Ig strand F [structural motif]; Region: Ig strand
                     F"
                     /db_xref="CDD:409446"
     misc_feature    1154..1189
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="Ig strand G [structural motif]; Region: Ig strand
                     G"
                     /db_xref="CDD:409446"
     misc_feature    1193..1453
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="Immunoglobulin domain; Region: Ig_3; pfam13927"
                     /db_xref="CDD:433584"
     misc_feature    1358..1360
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="N-linked (GlcNAc...) asparagine.
                     /evidence=ECO:0000255; propagated from
                     UniProtKB/Swiss-Prot (Q08156.1); glycosylation site"
     misc_feature    1406..1408
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="N-linked (GlcNAc...) asparagine.
                     /evidence=ECO:0000255; propagated from
                     UniProtKB/Swiss-Prot (Q08156.1); glycosylation site"
     misc_feature    1535..1597
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="propagated from UniProtKB/Swiss-Prot (Q08156.1);
                     transmembrane region"
     misc_feature    1616..2740
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="Catalytic domain of the Protein Tyrosine Kinase,
                     Kit; Region: PTKc_Kit; cd05104"
                     /db_xref="CDD:270682"
     misc_feature    1661..1663
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="Phosphotyrosine, by autocatalysis.
                     /evidence=ECO:0000250; propagated from
                     UniProtKB/Swiss-Prot (Q08156.1); phosphorylation site"
     misc_feature    1667..1669
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="Phosphotyrosine, by autocatalysis.
                     /evidence=ECO:0000250; propagated from
                     UniProtKB/Swiss-Prot (Q08156.1); phosphorylation site"
     misc_feature    order(1742..1762,1766..1768,1820..1822,1826..1828,
                     1970..1972,1976..1978,1988..1990,2330..2332,2342..2347,
                     2351..2353,2384..2386,2438..2452,2477..2479,2582..2584)
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="active site"
                     /db_xref="CDD:270682"
     misc_feature    order(1742..1747,1751..1762,1766..1768,1820..1822,
                     1826..1828,1970..1972,1976..1978,1988..1990,2342..2347,
                     2351..2353,2384..2386)
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="ATP binding site [chemical binding]; other site"
                     /db_xref="CDD:270682"
     misc_feature    2066..2068
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="Phosphotyrosine, by autocatalysis.
                     /evidence=ECO:0000250; propagated from
                     UniProtKB/Swiss-Prot (Q08156.1); phosphorylation site"
     misc_feature    2117..2119
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="Phosphotyrosine, by autocatalysis.
                     /evidence=ECO:0000250; propagated from
                     UniProtKB/Swiss-Prot (Q08156.1); phosphorylation site"
     misc_feature    order(2330..2332,2342..2344,2438..2452,2477..2479,
                     2582..2584)
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:270682"
     misc_feature    2381..2458
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="activation loop (A-loop); other site"
                     /db_xref="CDD:270682"
     misc_feature    2423..2425
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="Phosphotyrosine, by autocatalysis.
                     /evidence=ECO:0000250; propagated from
                     UniProtKB/Swiss-Prot (Q08156.1); phosphorylation site"
     misc_feature    2762..2764
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /note="Phosphotyrosine, by autocatalysis.
                     /evidence=ECO:0000250; propagated from
                     UniProtKB/Swiss-Prot (Q08156.1); phosphorylation site"
     exon            69..308
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /inference="alignment:Splign:2.1.0"
     exon            309..587
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /inference="alignment:Splign:2.1.0"
     exon            588..724
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /inference="alignment:Splign:2.1.0"
     exon            725..884
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /inference="alignment:Splign:2.1.0"
     exon            885..1074
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /inference="alignment:Splign:2.1.0"
     exon            1075..1190
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /inference="alignment:Splign:2.1.0"
     exon            1191..1305
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /inference="alignment:Splign:2.1.0"
     exon            1306..1499
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /inference="alignment:Splign:2.1.0"
     exon            1500..1606
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /inference="alignment:Splign:2.1.0"
     exon            1607..1733
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /inference="alignment:Splign:2.1.0"
     exon            1734..1838
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /inference="alignment:Splign:2.1.0"
     exon            1839..1949
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /inference="alignment:Splign:2.1.0"
     exon            1950..2100
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /inference="alignment:Splign:2.1.0"
     exon            2101..2189
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /inference="alignment:Splign:2.1.0"
     exon            2190..2317
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /inference="alignment:Splign:2.1.0"
     exon            2318..2440
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /inference="alignment:Splign:2.1.0"
     exon            2441..2552
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /inference="alignment:Splign:2.1.0"
     exon            2553..2652
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /inference="alignment:Splign:2.1.0"
     exon            2653..2758
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /inference="alignment:Splign:2.1.0"
     exon            2759..5044
                     /gene="KIT"
                     /gene_synonym="SCFR"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      5044
                     /gene="KIT"
                     /gene_synonym="SCFR"
ORIGIN      
catggagggcgcgcacctcgcctgggagctggcgcacgccgtgctgctgctgagcctcatccccgcaggtggttcagtgcctcatgaagaatcctcgctggttgtgaacaaaggggaggagttaaggctgaagtgcaatgaggaaggacccgtgacttggaatttccagaactcagatccatcggcaaaaacaaggatttccaatgagaaggaatggcacaccaaaaatgcaacaatcagagacataggcagatatgagtgcaaaagcaaagggagtattgtcaactctttctatgtttttgttaaagatccaaatgtgctcttccttgttgattctctgatctatgggaaagaagacagtgacatcctgctggtgtgcccactaacagatccagatgttttaaacttcaccctgagaaaatgcgatggcaaacctctccccaaaaacatgacattcattcccaatccacagaagggtatcattataaagaacgtacagaggtcattcaagggctgctaccagtgtttggcaaagcataatggagttgagaaaatatcagagcacattttcctgaatgtgagaccagttcacaaagctcttccagtcattaccttatccaaaagctatgagcttctcaaagaaggggaagaatttgaagttacatgcataatcacggatgtggatagcagcgtaaaagctagttggatttcttacaaaagtgcgattgttacaagcaaaagcagaaatttgggtgattacggatacgaaaggaaattaacattgaacatccgttcagtgggagttaatgattctggagaattcacatgccaagcagagaaccctttcggaaaaaccaatgccacggtaaccttgaaagcactagctaaaggatttgtccgtttgtttgcaacaatgaataccacaattgacataaatgcaggacaaaatggaaatttaacagttgaatatgaggcgtatccaaaaccaaaggaagaagtctggatgtacatgaacgaaacattgcagaattcatcggaccattatgtcaagttcaagactgtgggcaataacagttatacaagcgaacttcaccttacccgattaaaaggaacagagggaggcatttacacattttttgtgtccaactcagatgccagctcctctgtaacatttaatgtctacgtgaaaacaaaaccagagatccttaccttggatatgctcggcaatgacattcttcagtgtgtggcaactggattcccagcccctaccatttactggtatttttgcccaggaactgaacagaggtgtttagactcaccaacgatatcccccatggatgtgaaagtcagttacacaaactcatcggtgccatcctttgagcggatcctggtcgagagcactgtgaacgccagcatgttcaagagcactggtaccatctgctgtgaggcatccagcaatggtgacaagagctctgttttctttaactttgctattaaagagcaaatccgtacccacacccttttcacacctttactaatcgcatttggggtcgccgctggactgatgtgcatcatagtcatgatcctggtgtacatatatttgcagaaacccaaatatgaagtccagtggaaagttgttgaagaaataaatggaaacaactatgtttacatagacccaacgcaacttccttatgatcacaaatgggagtttcctagaaaccggttgagttttggtaaaacccttggtgctggagcttttggaaaggttgttgaagccactgcttatggcctatttaaatctgatgccgctatgacagtagcagtgaaaatgttgaaaccaagcgcccatttaactgaaagagaagccttgatgtcagagctaaaagttctcagttaccttggtaaccacattaatattgtgaatctacttggagcttgcactattggagggcccacgctggtcattacagaatattgctgctatggcgatctcttaaatttcctgaggcggaagcgagattcattcatttgtccaaagcatgaagagcacgcagaagcagctgtttatgagaaccttttgcaccaggcagagcccacagcggatgctgtcaatgagtacatggacatgaaaccaggagtgtcatatgctgttcccccaaaagctgataaaaaaaggccggtgaaatctggatcttacaccgatcaggatgttaccctttccatgttggaagatgacgaacttgctctagatgttgaagatctattaagcttctcttaccaggtggcaaagggcatgagcttcctggcctctaaaaactgcattcatagggatctggcagcaagaaatattcttctcactcatggtcgaataacaaaaatctgtgactttggtctggcaagagatataaggaatgactcaaattacgtggttaaaggaaatgctcgtctccctgtgaagtggatggcacctgaaagcattttcaactgcgtttacaccttcgagagtgatgtctggtcttatggaatattgctttgggaactcttctccttaggaagcagcccttacccagggatgcccgtggactccaagttctataaaatgatcaaggagggatatcggatgttcagccccgagtgctcaccccccgaaatgtacgacataatgaagagttgctgggatgccgatcccttgcagagacccacattcaaacagatcgtgcagctgatagaacagcagctttccgataatgccccccgggtgtatgcaaacttttccactccgccttccactcaaggcaatgctacagatcattcggtgaggattaactcagtgggtagcagcgcttcatctactcagcccctcctggtacgcgaagatgtttgagtggcatctggaagaagaggagcccagctgtacttgctgtttgtattgtgtagggggtgagagagggaggacttctatttcttttacttttactcactactaccactgtgtagctgaaatgttgttgtaatactgtcctttaccacacactgttacacataaacttaatgtgctgagcacggttacaggcatcattgcaatgttaactgaagctgtatatattttgctatattgtgtgtatttgcagtagagagccagatctgaagaagaagaacaaaaaaacacaaaagaaaccctgggccagggtgttgaatgagatgactacagattgaaccaaatctgcagcggtccttctctggatccatgcttgggaagcgtgtagtcattttccagttaattttgttttgttgaatttaagaaataaacagatataaagcaaagtgctttgcaaacccctttccatatccagccacacctgagatgctttccccggcagacactgcaggttggaggccaggagggacagacagtgcgtccgtgggcaagaagtggaagccaagggatggacatgggcaatacaacagagaacttccagacactctggggcatgaggcagatctggaagggaaagacctcagtctttatttcctacctgggcagtcagcagtgcagagcagtcagtaggtttctgtgggtgcctgcaccacatcccactggcattccaccacggagcatccaccgcagtcagaatcgcagggatgagatgcttggtttgctaagagtcatgtccaaaagcattcaccaaagataggtgggctctgctgagctggtcaaatgacaggaggagggttgcttacagtaaatggagtgtcagaggagcagaggccgtttaacgagacatcttatcttggcaggagcagaagcaaaaaattctatcctgagggccctttgcttatcttatgatatgcaggtgaatatttcccacaggctggcttggataatgctctcaggaaagggctcttcctcccacaagtcatttcatctttctatctctgtagtggtgctgagatcccagagaagaacttcactgggaagcatcgaattttttaatggaatagaacaatgtataccttcggtcttgtttggaggcagatatgaggctgtggggtcagtttctgttgggcctgggattgtgcttaagtatcttataattccttttcttcctgttggaaacactgttggttctttttttttttttttttttaacccttgttctgtcgcctttaaattagtaaatgcgtcaagaggagcatttttcagacagagagtaccagttaagtacctatttatttacattgcacttaagcactctgtaacttatgttttaccaggattttggttgagtttacatgcattttaaatgtgtaactaactgcccaaaatgcaagacgattgtaaatacacacactggtagtacattttaggtagtgttgaataccacactctttatatgcctgtgcatttggtttattgttacaggaattcatctttcagagttagtcgagaagtagccatttgcactgaacttacttaggctgttgcacctttccaaagttagccagttgtttggaggcactcttatgcatacttgttgttgagcattttcagtttaatgctataaaagctctttcgtagtgtgttggctttcagagcaactgtagacaaactagttttataatcatagatgtcttggtactttatggacatttagctgaaaaaagtttgggttttttctttcttaaaatttatatttttataatttggggggggttgaaacttattttgcaatggcttagtgtttgaatggttttatgcattgtttttgtaaatatggaaatgtagcaataatgtccttttgactattctcagtccttgagtctcaaaaatatttatatatatatatatatgcaaaaactatatgtataaatatgtaagtgttcaaaagtttatgaaacacttatggatatgttgctcggttgtagaattgcagttcagaagagttcaaataaatctgtaaatatgtattcagatgctaccgatgtgtactatgttaagatggaatattttcatgtaagtcttaataaattcttgggttgaagc
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]