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Previous release (v1)
2024-05-04 21:40:05, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_204360 4009 bp mRNA linear VRT 23-SEP-2023
DEFINITION Gallus gallus EPH receptor A1 (EPHA1), mRNA.
ACCESSION NM_204360
VERSION NM_204360.3
KEYWORDS RefSeq.
SOURCE Gallus gallus (chicken)
ORGANISM Gallus gallus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
Phasianidae; Phasianinae; Gallus.
REFERENCE 1 (bases 1 to 4009)
AUTHORS Tang H, Finn RD and Thomas PD.
TITLE TreeGrafter: phylogenetic tree-based annotation of proteins with
Gene Ontology terms and other annotations
JOURNAL Bioinformatics 35 (3), 518-520 (2019)
PUBMED 30032202
REFERENCE 2 (bases 1 to 4009)
AUTHORS Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C,
Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S.
TITLE Manual GO annotation of predictive protein signatures: the InterPro
approach to GO curation
JOURNAL Database (Oxford) 2012, bar068 (2012)
PUBMED 22301074
REMARK Publication Status: Online-Only
REFERENCE 3 (bases 1 to 4009)
AUTHORS Sasaki E, Hikono H, Kaku Y, Kuwana T, Naito M and Sakurai M.
TITLE ephA9, a novel avian receptor tyrosine kinase gene
JOURNAL Gene 316, 103-110 (2003)
PUBMED 14563556
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from
JAENSK010000015.1.
On Sep 23, 2021 this sequence version replaced NM_204360.2.
##Evidence-Data-START##
Transcript exon combination :: AB054534.1, SRR13267655.119336.1
[ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMEA103992290, SAMEA103992323
[ECO:0000348]
##Evidence-Data-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-245 JAENSK010000015.1 2094657-2094901
246-313 JAENSK010000015.1 2098035-2098102
314-589 JAENSK010000015.1 2109502-2109777
590-980 JAENSK010000015.1 2111419-2111809
981-1136 JAENSK010000015.1 2116597-2116752
1137-1469 JAENSK010000015.1 2116948-2117280
1470-1594 JAENSK010000015.1 2118174-2118298
1595-1754 JAENSK010000015.1 2118400-2118559
1755-1851 JAENSK010000015.1 2121635-2121731
1852-1907 JAENSK010000015.1 2122414-2122469
1908-2030 JAENSK010000015.1 2122732-2122854
2031-2216 JAENSK010000015.1 2122957-2123142
2217-2278 JAENSK010000015.1 2123593-2123654
2279-2488 JAENSK010000015.1 2124179-2124388
2489-2638 JAENSK010000015.1 2125073-2125222
2639-2832 JAENSK010000015.1 2125699-2125892
2833-2988 JAENSK010000015.1 2126205-2126360
2989-4009 JAENSK010000015.1 2127209-2128229
FEATURES Location/Qualifiers
source 1..4009
/organism="Gallus gallus"
/mol_type="mRNA"
/db_xref="taxon:9031"
/chromosome="1"
/map="1"
gene 1..4009
/gene="EPHA1"
/gene_synonym="EPHA9"
/note="EPH receptor A1"
/db_xref="CGNC:49118"
/db_xref="GeneID:378782"
exon 1..245
/gene="EPHA1"
/gene_synonym="EPHA9"
/inference="alignment:Splign:2.1.0"
misc_feature 107..109
/gene="EPHA1"
/gene_synonym="EPHA9"
/note="upstream in-frame stop codon"
CDS 158..3067
/gene="EPHA1"
/gene_synonym="EPHA9"
/EC_number="2.7.10.1"
/note="protein tyrosine kinase EphA9; ephrin type-A
receptor 1"
/codon_start=1
/product="ephrin type-A receptor 1 precursor"
/protein_id="NP_989691.2"
/db_xref="CGNC:49118"
/db_xref="GeneID:378782"
/translation="
MELRMGRIELSLGILLFGSLLPAEVLGKEVNLLDTSTAQGELGWLPDPPEIGWSEVQQMINGTPVYMYQDCSVLSEGDTDHWLRTNWIYRGEAASRIYVELKFTVRDCKSFKGEAVTCKETFNLYYMESEQDVGIQFRRPMFIKLNTVAADRSFTNRDIESGAMQLNTEVCPIGKLSRRGFYLAFQNSGACVAMVSVRVYYKTCPEAVQGLARFPETLAGLEGLTEVPGVCVEYAAEETGSPPRMHCSTDGEWLVPMGRCLCAVGFEEVDGSCVACQRGFYRHSLETKRCLKCPPNSLSNELGATSCSCNAGFYRAPSEGQNIACTRPPSAPRNVSFSLTGTQLSLWWQPPSDHGGRKDLTYTVFCQRCHFLSCDPCEPGVVFSPSSSGLTKTAVDVDGLEAYTNYTFAVEAHNGVSGMGPAPQRTAPAVWVAVGHAAPVTVSQFILTQRDDSSLSVSWLAPRQRSRTSVEYEVMFFEKGEEARYTVKHLLEPNVTLTDLQPDTTYLLRVRSITPLGPGPYSQEQEFRTLPPGTGALSGGVMASIIFGVLLFIGLLLGIVFFRRKKAHRRQARPDYSTSGFDREKVWLKPYVDLQPYDDPSRGVLEFIKELDVSCVTMENVIGEGEFGEVYRGSLRLPGKERIVVAIKTLKSTYSDSQWWNFLREATIMGQFNHPNIVHLEGVVTKRRPMMIITEYMENGALDTFLRENEEKFSPVQLVNMLQGIASGMTYLSEHNYVHRDLAARNILVTRSLQCKVSDFGLSRILENDAEGTYETKGGKIPIRWTAPEAIAHRIFTSASDVWSFGIVMWEVLSFGDKPYGNMTNQEVMKSLEDGYRLPPPVDCPSILYELMKSCWSHDRMRRPHFQEIRAQLQHFSSSPHLLRCVADFDPRVTLRLPSCSGSDGIPYRSIPEWLESIRMKRYISNFRTAGLDTMESILDLTAEDLKQMGVSLPGHQKRILCSIQGFKE"
sig_peptide 158..238
/gene="EPHA1"
/gene_synonym="EPHA9"
/inference="COORDINATES: ab initio prediction:SignalP:4.0"
misc_feature 242..766
/gene="EPHA1"
/gene_synonym="EPHA9"
/note="Ligand Binding Domain of Ephrin type-A Receptor 1;
Region: EphR_LBD_A1; cd10479"
/db_xref="CDD:198447"
misc_feature order(317..319,323..337,353..358,362..364,368..370,
467..469,473..475,488..493,617..619,629..634,641..649,
728..736,740..742)
/gene="EPHA1"
/gene_synonym="EPHA9"
/note="ephrin binding site [polypeptide binding]; other
site"
/db_xref="CDD:198447"
misc_feature order(1142..1144,1361..1363,1409..1411)
/gene="EPHA1"
/gene_synonym="EPHA9"
/note="Interdomain contacts [active]"
/db_xref="CDD:238020"
misc_feature 1145..1420
/gene="EPHA1"
/gene_synonym="EPHA9"
/note="Fibronectin type III domain; Region: fn3;
pfam00041"
/db_xref="CDD:394996"
misc_feature 1472..1744
/gene="EPHA1"
/gene_synonym="EPHA9"
/note="Fibronectin type 3 domain; One of three types of
internal repeats found in the plasma protein fibronectin.
Its tenth fibronectin type III repeat contains an RGD cell
recognition sequence in a flexible loop between 2 strands.
Approximately 2% of all...; Region: FN3; cd00063"
/db_xref="CDD:238020"
misc_feature order(1472..1474,1661..1663,1706..1708)
/gene="EPHA1"
/gene_synonym="EPHA9"
/note="Interdomain contacts [active]"
/db_xref="CDD:238020"
misc_feature order(1709..1714,1718..1723)
/gene="EPHA1"
/gene_synonym="EPHA9"
/note="Cytokine receptor motif [active]"
/db_xref="CDD:238020"
misc_feature 1760..1996
/gene="EPHA1"
/gene_synonym="EPHA9"
/note="Ephrin type-A receptor 2 transmembrane domain;
Region: EphA2_TM; pfam14575"
/db_xref="CDD:434048"
misc_feature 1988..2785
/gene="EPHA1"
/gene_synonym="EPHA9"
/note="Catalytic domain of Ephrin Receptor Protein
Tyrosine Kinases; Region: PTKc_EphR; cd05033"
/db_xref="CDD:270629"
misc_feature order(2021..2023,2027..2035,2045..2047,2093..2095,
2099..2101,2237..2242,2246..2248,2378..2380,2390..2395,
2399..2401,2432..2434,2489..2503,2528..2530,2630..2632)
/gene="EPHA1"
/gene_synonym="EPHA9"
/note="active site"
/db_xref="CDD:270629"
misc_feature order(2021..2023,2030..2035,2093..2095,2099..2101,
2237..2242,2246..2248,2393..2395,2399..2401,2432..2434)
/gene="EPHA1"
/gene_synonym="EPHA9"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:270629"
misc_feature order(2378..2380,2390..2392,2489..2503,2528..2530,
2630..2632)
/gene="EPHA1"
/gene_synonym="EPHA9"
/note="polypeptide substrate binding site [polypeptide
binding]; other site"
/db_xref="CDD:270629"
misc_feature order(2429..2455,2465..2509)
/gene="EPHA1"
/gene_synonym="EPHA9"
/note="activation loop (A-loop); other site"
/db_xref="CDD:270629"
misc_feature 2870..3058
/gene="EPHA1"
/gene_synonym="EPHA9"
/note="SAM domain of EPH-A1 subfamily of tyrosine kinase
receptors; Region: SAM_EPH-A1; cd09542"
/db_xref="CDD:188941"
misc_feature order(2924..2926,3023..3025)
/gene="EPHA1"
/gene_synonym="EPHA9"
/note="putative phosphorylation site [posttranslational
modification]; other site"
/db_xref="CDD:188941"
exon 246..313
/gene="EPHA1"
/gene_synonym="EPHA9"
/inference="alignment:Splign:2.1.0"
exon 314..589
/gene="EPHA1"
/gene_synonym="EPHA9"
/inference="alignment:Splign:2.1.0"
exon 590..980
/gene="EPHA1"
/gene_synonym="EPHA9"
/inference="alignment:Splign:2.1.0"
exon 981..1136
/gene="EPHA1"
/gene_synonym="EPHA9"
/inference="alignment:Splign:2.1.0"
exon 1137..1469
/gene="EPHA1"
/gene_synonym="EPHA9"
/inference="alignment:Splign:2.1.0"
exon 1470..1594
/gene="EPHA1"
/gene_synonym="EPHA9"
/inference="alignment:Splign:2.1.0"
exon 1595..1754
/gene="EPHA1"
/gene_synonym="EPHA9"
/inference="alignment:Splign:2.1.0"
exon 1755..1851
/gene="EPHA1"
/gene_synonym="EPHA9"
/inference="alignment:Splign:2.1.0"
exon 1852..1907
/gene="EPHA1"
/gene_synonym="EPHA9"
/inference="alignment:Splign:2.1.0"
exon 1908..2030
/gene="EPHA1"
/gene_synonym="EPHA9"
/inference="alignment:Splign:2.1.0"
exon 2031..2216
/gene="EPHA1"
/gene_synonym="EPHA9"
/inference="alignment:Splign:2.1.0"
exon 2217..2278
/gene="EPHA1"
/gene_synonym="EPHA9"
/inference="alignment:Splign:2.1.0"
exon 2279..2488
/gene="EPHA1"
/gene_synonym="EPHA9"
/inference="alignment:Splign:2.1.0"
exon 2489..2638
/gene="EPHA1"
/gene_synonym="EPHA9"
/inference="alignment:Splign:2.1.0"
exon 2639..2832
/gene="EPHA1"
/gene_synonym="EPHA9"
/inference="alignment:Splign:2.1.0"
exon 2833..2988
/gene="EPHA1"
/gene_synonym="EPHA9"
/inference="alignment:Splign:2.1.0"
exon 2989..4009
/gene="EPHA1"
/gene_synonym="EPHA9"
/inference="alignment:Splign:2.1.0"
ORIGIN
atcataactgtgggccaggcagggaggttgtgcaatgtgcgcgctccagtcaggaggctgcgggagagattcatgcgctgtgagcaggagccgaggcttggaggcctgagccaggagaacaggcaggggctgggatcaaggcccccctccaaccagcatggagctgaggatgggcaggatcgagctctcccttgggatcctcctctttgggtctctccttccagctgaggtgcttgggaaagaagtgaatctgctagacacaagcactgcacagggtgagctgggctggcttccagaccctccagaaatagggtggagtgaagtgcagcagatgataaatggtaccccagtctatatgtaccaggactgcagcgtgctctctgagggtgacactgatcactggcttcgcaccaactggatttatcggggtgaggcagcatctcgcatttatgtggagctgaagtttactgtgagagactgcaagagcttcaaaggtgaagcggtgacctgcaaagagactttcaacctctactacatggagtctgagcaggatgtcgggatccagttccgccgcccaatgttcatcaagctcaacactgtggcagcagatcgaagtttcacaaacagagacatcgaatctggtgccatgcagctgaacacagaagtgtgccccattgggaagctgtctcgtcggggcttctacttagctttccagaactctggggcttgtgtagcaatggtgtctgttcgagtatattacaagacttgcccagaggcagtgcagggccttgcccgttttccagagacactagcaggcttggaggggctcacagaagtgcctggtgtatgcgtggaatatgcagctgaagaaacaggctctcccccgaggatgcactgcagcacagatggggagtggctggtaccaatgggccgatgcctttgtgctgtggggtttgaggaagtcgatgggagctgcgtagcctgccagcgaggattctaccgtcactctctggagactaaacgttgcctgaagtgccccccaaacagcttgtccaatgagttaggggctacatcttgttcctgcaacgcaggcttctatcgggcaccttcggagggccaaaacatcgcttgcacccgtcctccctcagctccccgcaatgtcagcttctcccttactggcacacagctcagtctgtggtggcagccacccagtgaccacggtgggcggaaggacctaacttacacagtcttctgtcagcgctgtcatttcctgtcatgtgatccatgtgagcctggtgtggtattctccccaagttcttcaggtctcaccaaaactgctgtggatgtggatggcctagaagcttacaccaactacacatttgctgtggaagcccataatggtgtctcaggaatgggacctgctccacagagaactgctccagctgtctgggttgcagttggacatgcagctccagtgacagtatcccagtttatcctgacacagagagatgacagtagtctgtctgtttcttggcttgccccacggcagcgcagccggacctcagtggagtacgaggtcatgttctttgagaagggagaggaggcacgttacacagtgaagcaccttcttgagccaaatgtcactctgacagaccttcagccagacacaacctacctgcttcgtgtgagatccatcacaccccttgggcctgggccctactcccaggagcaggaattccgcacccttccgccaggcaccggagctctgtctggtggtgtcatggcatctattatctttggagttctgctatttattgggctgcttctgggaattgtgttctttcgacgaaagaaggctcaccgcagacaggcacggcctgattacagtacttcaggctttgatcgagagaaggtctggttgaagccctatgtggacctgcaaccatatgatgaccccagtagaggtgttctggagttcattaaggaactggatgtctcttgtgtcactatggagaatgtgattggagaaggggagtttggggaggtctatcgtgggtccctgcggctcccagggaaagaacgtattgtggttgccatcaaaaccctcaagtcaacatattcagactcacaatggtggaacttcctgcgtgaggcaacaattatggggcagttcaatcacccaaacatcgtacatctggaaggagttgtcaccaaaagaaggccaatgatgatcatcactgagtacatggagaatggagctctggataccttcctccgggagaatgaggaaaaatttagccctgtgcagcttgtgaacatgctgcagggaatagcctccggcatgacctacctttcagaacacaactatgtgcaccgggatctggctgctcgcaacatcctggtaacacgcagccttcaatgcaaggtgtctgactttggtctttcccgaatattggagaatgatgcagagggaacatatgaaactaagggtggtaagattccgatccgatggacagccccagaggccattgctcatcggattttcacctcagccagtgatgtctggagctttggaattgtcatgtgggaggtgctgtcgtttggtgacaagccatatgggaatatgaccaatcaagaggtgatgaaaagcttagaggatgggtaccggcttcccccacctgtggactgcccatccatcctctatgagctaatgaagagctgttggtcacatgatcgaatgaggaggcctcatttccaggagatccgggcacagctgcaacacttcagctcaagcccccatctccttcggtgtgttgcagactttgatcccagggtaacgctccggctccccagctgcagcggatctgatggtatcccttatcgatctattcccgagtggctggaatccattcgcatgaagcgttatatctccaactttcgcactgctggccttgacaccatggagtcaattctggacctcactgctgaggacttgaaacagatgggagtgtcacttccaggccaccagaagaggattctgtgtagcatccaaggctttaaggagtgaccagttgttgctctctcaagcttgccaaatgctgtcttaccagatatcacttggaatcattcctatggcaattgcttccaaatgagtgactgggacaagcaaagcaaaacaaccaggactgaaaagactttatgaggcaacaccacctgctctcatttctgtttccccttgcttgagccagcagtacttttcagaacactggtcttagaatctgttctcaatcctgtcttctactgttagttcagtgcagcacggaataatccctgtagtccacataatggactttcgagccctcaggtaataacatggaaatataaggatacatacaactgcagggtggggattgggataatgttttaagattgaaaatgaggattcagaagctgtggaaccttcagaaaacatgcgcgaggatgcaaacgtagaggttgggcacattcactccttgatgcacatcccttctcatttcagcagccttctgtcttccttatttcacaataggaacaacctattcaatccttcacaaggctgctgctaagggatatgtttttaaattaagctattcttgctttaaacaccaccaagtcatggtgtactttgttctttgaaggagaagttgggagtagcagcgcaccctgctgtaacttgtgtgatcatgtaaccttggcatgttgcttacttgcacgtgtacttcagcagagtgatttacctctcttcaacctgcttaatacctttacttgttccatagacacaaaaccttgtaggtaccaatttttctctgccccttttttgaaggagggactgaataaggtattcgtaacagaaaaatgtagaggtggtctgtcattccttctctgtgaaggaagtattattatttatcagaactcaagacagaggtgctacagactgtaaatagtattttgtaaataaacttgaggcaga
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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