2024-05-06 11:47:45, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001396481 3659 bp mRNA linear VRT 23-SEP-2023 DEFINITION Gallus gallus argonaute 4, RISC catalytic component (AGO4), transcript variant 3, mRNA. ACCESSION NM_001396481 VERSION NM_001396481.1 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE 1 (bases 1 to 3659) AUTHORS Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C, Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S. TITLE Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation JOURNAL Database (Oxford) 2012, bar068 (2012) PUBMED 22301074 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3659) AUTHORS Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P, Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci P, Hayashizaki Y and Buerstedde JM. TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis JOURNAL Genome Biol 6 (1), R6 (2005) PUBMED 15642098 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000339.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: SRR13267661.2873.1, SRR13267654.121578.1 [ECO:0000332] RNAseq introns :: mixed sample support SAMEA103992290, SAMEA103992323 [ECO:0006172] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-250 JAENSK010000339.1 4255376-4255625 c 251-416 JAENSK010000339.1 4250705-4250870 c 417-537 JAENSK010000339.1 4250117-4250237 c 538-719 JAENSK010000339.1 4249749-4249930 c 720-856 JAENSK010000339.1 4249238-4249374 c 857-991 JAENSK010000339.1 4249020-4249154 c 992-1079 JAENSK010000339.1 4248755-4248842 c 1080-1227 JAENSK010000339.1 4248226-4248373 c 1228-1347 JAENSK010000339.1 4248028-4248147 c 1348-1476 JAENSK010000339.1 4247677-4247805 c 1477-1610 JAENSK010000339.1 4247384-4247517 c 1611-1795 JAENSK010000339.1 4246792-4246976 c 1796-1955 JAENSK010000339.1 4246005-4246164 c 1956-2271 JAENSK010000339.1 4245244-4245559 c 2272-2406 JAENSK010000339.1 4244916-4245050 c 2407-2508 JAENSK010000339.1 4244014-4244115 c 2509-2708 JAENSK010000339.1 4243583-4243782 c 2709-3659 JAENSK010000339.1 4242534-4243484 c FEATURES Location/Qualifiers source 1..3659 /organism="Gallus gallus" /mol_type="mRNA" /db_xref="taxon:9031" /chromosome="23" /map="23" gene 1..3659 /gene="AGO4" /gene_synonym="EIF2C4" /note="argonaute 4, RISC catalytic component" /db_xref="CGNC:66346" /db_xref="GeneID:419629" exon 1..250 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" misc_feature 187..189 /gene="AGO4" /gene_synonym="EIF2C4" /note="upstream in-frame stop codon" exon 251..416 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 417..537 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" CDS 433..2817 /gene="AGO4" /gene_synonym="EIF2C4" /note="isoform 2 is encoded by transcript variant 3; protein argonaute-4; argonaute RISC catalytic component 4; eukaryotic translation initiation factor 2C, 4" /codon_start=1 /product="protein argonaute-4 isoform 2" /protein_id="NP_001383410.1" /db_xref="CGNC:66346" /db_xref="GeneID:419629" /translation="
MVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEGKDQTFKVSIQWVSVVSLQLLLEALAGHLNEVPEDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNEMTELTGRVLPAPMLQYGGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKLTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQETSQELLYSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKTERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTQHTMYFA"
misc_feature 442..696 /gene="AGO4" /gene_synonym="EIF2C4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 727..879 /gene="AGO4" /gene_synonym="EIF2C4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 880..1242 /gene="AGO4" /gene_synonym="EIF2C4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1036..1038,1081..1083,1123..1125,1135..1137, 1189..1191,1210..1212,1216..1218) /gene="AGO4" /gene_synonym="EIF2C4" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1381..2688 /gene="AGO4" /gene_synonym="EIF2C4" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1792..1794,1804..1806,1840..1851,1858..1860, 1882..1884,1891..1893,1903..1905,1915..1917) /gene="AGO4" /gene_synonym="EIF2C4" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1996..1998,2002..2004,2242..2244,2656..2658) /gene="AGO4" /gene_synonym="EIF2C4" /note="active site" /db_xref="CDD:240015" misc_feature 2704..2769 /gene="AGO4" /gene_synonym="EIF2C4" /note="propagated from UniProtKB/Swiss-Prot (Q5ZMW0.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" exon 538..719 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 720..856 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 857..991 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 992..1079 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 1080..1227 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 1228..1347 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 1348..1476 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 1477..1610 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 1611..1795 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 1796..1955 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 1956..2271 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 2272..2406 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 2407..2508 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 2509..2708 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" exon 2709..3659 /gene="AGO4" /gene_synonym="EIF2C4" /inference="alignment:Splign:2.1.0" ORIGIN
acgcgccgccgcttggcatgctgggaagtgcagtcctgaggcaaggcgggaggacggcggtgaggggctcacgggcagctgaggacgcgccgccgtctcgctcggtgctcatcccaaccctcctccgcaccgcggtcaccggagctgcaagacccccggaagccgccagccgtgtgcgcggagcggtaggactcacctcaacgggagccgccgccatggcccgggccggacgcagtcacagcgctgccgcggcccccagcaagccttttccagcccccccgtcgcccaggcctgggaactgttgggaaacccatccgcctcctagccaaccactttcaggttcagatccccaagattgatgtttatcactatgatgtggatatcaaaccagaaaaacgaccccgaagagtgaacagagaagtggtggatactatggtgagacacttcaagatgcagatatttggtgaccggcagcctggatacgatgggaagcggaacatgtacactgcacacccattacccattggcagggacagagtggatatggaggtgacacttccaggagaggggaaggaccagactttcaaagtgtccattcagtgggtgtcagttgtcagccttcagttgctgttggaagctctggcagggcatttgaatgaagttcctgaagattctgtacaagcacttgatgtaattacacggcaccttccgtccatgaggtatactcctgtgggtcgctcctttttttccccccctgaaggctattaccaccctctgggtggtggcagggaggtctggtttggtttccaccagtctgtcaggcctgccatgtggaacatgatgctcaacattgatgtatcagcaactgctttctatcgtgctcagcctatcattgagttcatgtgtgaggtcttggacattcagaacatcaatgaacaaaccaagcctctgacagactcccaacgtgtcaagtttaccaaagaaatcagaggtctaaaagtagaggttactcactgtggccagatgaagagaaagtatcgagtttgcaatgttactcgtcgaccagccagccatcagacgtttcctctgcagttggaaaatgggcaggctatggagtgtacagtagctcagtattttaagcagaagtacagtctgcagctaaaatatcctcatcttccctgtctccaagtaggacaggagcagaaacacacatacttaccgcttgaggtgtgtaacatagtggcaggccagaggtgtatcaagaagttaacagacaatcagacatcaactatgataaaagcgactgcaagatctgcacccgaccgacaggaagaaatcagcagacttgtgaaaagtaacagtatggttggtggacctgatccatatctgaaggagtttggtattgttgtccataatgaaatgacagagttgacaggcagagttttgccagcgccaatgctgcaatatggaggcaggaacaagactgtggccacaccaaaccaaggtgtgtgggacatgagagggaaacagttctatgctggcattgagattaaagtttgggctgttgcctgttttgctcctcaaaaacaatgcagggaagacttactaaagagttttacagaccagctgcgcaagatctccaaggacgcagggatgccgatccaaggccagccctgtttctgtaaatacgcccagggtgcagacagtgtggagcccatgttcaaacatttaaaactgacttatgttggtctgcagctgattgtggtgattctacctggaaagacacccgtgtatgctgaagtaaagcgagttggcgacactcttcttggcatggccactcagtgtgttcaggtaaagaatgtggtgaaaacctcaccacaaacactgtccaacctgtgtctgaaaataaatgcaaagcttggaggaatcaacaacgtgctcgtacctcatcaaaggccctcggtgttccagcagccagtgatctttttgggagcagatgtcactcaccctcctgctggggatggaaagaagccttccatagctgctgtggtcggcagcatggatggccatcctagccgttactgtgccacagtgcgagtgcagacctcccgtcaggagacctcccaggaactgctgtacagccaggaggtgatacaggacctgacaaacatggtgcgagaactgctgatacagttttacaaatccacacgtttcaagcctacaagaatcatttactacagaggaggagtatcagaagggcagatgaagcaggtagcttggccagaacttatagcaatcagaaaggcctgtattagtttggaagaagactacagaccaggaataacctacatcgttgtgcagaaaagacaccacaccaggctgttctgtgccgacaaaactgaaagggtgggtaagagtggcaacgtaccagcgggcactactgtggacagcacgatcacgcacccttctgaatttgacttttacctctgtagccacgcaggaattcagggaaccagccggccctcccactatcaggtcctgtgggatgacaactgtttcactgcagatgagctacagctgctgacctatcagctgtgtcacacgtatgtgcgctgtacgcgatcagtctctattccagcacctgcatactatgccagactggtagcatttagggctagataccatcttgtggacaaggatcacgacagtgctgaaggcagccacgtgtcaggacagagcaatggccgtgatcctcaggctctggcaaaggcagtgcagatccaccatgatactcaacatacaatgtattttgcttgagagcatctgggaagatgaggcaaagccaacaactcgttcagtcctgacatgttttcaatgcctactgctatagctagggcccggtttctttcagactgcccactaccagcagctctgaacagtcgcactgaatctgtacttcaaacaatgtctgatgcaccgacacaattgagccattcgtttcgttattttacgtcatagaaattcatagactgtcttttctgatgcattggactaaatttttacctcaaagcgcaaaaggccgatcatcccgacgtttttaaaggacttggcacgaaaggtttctattgaatactttgctagctctggtctttaggttcccttctcatcccattagctgatggtgacgactgattctccgtcctcacgcgctgcttagtgagtatgcgtagtatggcgaagttctcctccagttcaatgtaatcgttctcttgtgtggggccatagatttttttaatggagattttagacttcactactgtaaatgccttttaacagacgtaactttcacaggtcttgcagtttttgtcggttttactaatgacctttttaacctgcagactcgggctgcaaagcaattgcactattctgcgagttcagatcggtggttcctgttgtgaatgtgtgacgtgcccaggtggtggtgcctggcagtagctttcaattgtaacgcctacagataatgctgccatggcgtcgtgacaaacactgaaccatcgttttcccccctctaaaaaaacaaaacaaaaaaaaaaacgaaaaaaaaaaaaacaaaaaaaggatttaaaaaaaaaatagaaaaaaaaatacaaaaaaaaaaa
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@meso_cacase at
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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