2024-05-06 09:54:31, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001317212 6707 bp mRNA linear VRT 23-SEP-2023 DEFINITION Gallus gallus argonaute 1, RISC catalytic component (AGO1), mRNA. ACCESSION NM_001317212 XM_425781 VERSION NM_001317212.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE 1 (bases 1 to 6707) AUTHORS Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C, Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S. TITLE Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation JOURNAL Database (Oxford) 2012, bar068 (2012) PUBMED 22301074 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 6707) AUTHORS Ender C and Meister G. TITLE Argonaute proteins at a glance JOURNAL J Cell Sci 123 (Pt 11), 1819-1823 (2010) PUBMED 20484662 REMARK Review article COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000339.1. On Sep 23, 2021 this sequence version replaced NM_001317212.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## RNAseq introns :: mixed sample support SAMEA103992290, SAMEA103992323 [ECO:0006172] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-145 JAENSK010000339.1 4237575-4237719 c 146-329 JAENSK010000339.1 4231795-4231978 c 330-450 JAENSK010000339.1 4230755-4230875 c 451-632 JAENSK010000339.1 4230446-4230627 c 633-769 JAENSK010000339.1 4230214-4230350 c 770-904 JAENSK010000339.1 4229776-4229910 c 905-992 JAENSK010000339.1 4229384-4229471 c 993-1140 JAENSK010000339.1 4228282-4228429 c 1141-1260 JAENSK010000339.1 4227848-4227967 c 1261-1383 JAENSK010000339.1 4227403-4227525 c 1384-1517 JAENSK010000339.1 4226668-4226801 c 1518-1702 JAENSK010000339.1 4225129-4225313 c 1703-1862 JAENSK010000339.1 4224806-4224965 c 1863-1953 JAENSK010000339.1 4224422-4224512 c 1954-2148 JAENSK010000339.1 4222106-4222300 c 2149-2283 JAENSK010000339.1 4221472-4221606 c 2284-2385 JAENSK010000339.1 4220498-4220599 c 2386-2585 JAENSK010000339.1 4219472-4219671 c 2586-6707 JAENSK010000339.1 4214938-4219059 c FEATURES Location/Qualifiers source 1..6707 /organism="Gallus gallus" /mol_type="mRNA" /db_xref="taxon:9031" /chromosome="23" /map="23" gene 1..6707 /gene="AGO1" /gene_synonym="EIF2C1" /note="argonaute 1, RISC catalytic component" /db_xref="CGNC:1607" /db_xref="GeneID:428222" exon 1..145 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" CDS 121..2694 /gene="AGO1" /gene_synonym="EIF2C1" /note="eukaryotic translation initiation factor 2C, 1; argonaute RISC catalytic component 1" /codon_start=1 /product="protein argonaute-1" /protein_id="NP_001304141.1" /db_xref="CGNC:1607" /db_xref="GeneID:428222" /translation="
MEAGPSGAAAGAYLPPLQQVFQAPRRPGIGTVGKPIKLLANYFEVDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWMAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 220..612 /gene="AGO1" /gene_synonym="EIF2C1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 640..792 /gene="AGO1" /gene_synonym="EIF2C1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 793..1155 /gene="AGO1" /gene_synonym="EIF2C1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(949..951,994..996,1036..1038,1048..1050,1102..1104, 1123..1125,1129..1131) /gene="AGO1" /gene_synonym="EIF2C1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1288..2565 /gene="AGO1" /gene_synonym="EIF2C1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1699..1701,1711..1713,1747..1758,1765..1767, 1789..1791,1798..1800,1810..1812,1822..1824) /gene="AGO1" /gene_synonym="EIF2C1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1903..1905,1909..1911,2119..2121,2533..2535) /gene="AGO1" /gene_synonym="EIF2C1" /note="active site" /db_xref="CDD:240015" exon 146..329 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" exon 330..450 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" exon 451..632 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" exon 633..769 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" exon 770..904 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" exon 905..992 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" exon 993..1140 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" exon 1141..1260 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" exon 1261..1383 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" exon 1384..1517 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" exon 1518..1702 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" exon 1703..1862 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" exon 1863..1953 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" exon 1954..2148 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" exon 2149..2283 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" exon 2284..2385 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" exon 2386..2585 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" exon 2586..6707 /gene="AGO1" /gene_synonym="EIF2C1" /inference="alignment:Splign:2.1.0" ORIGIN
ggcgcgtgcgcgctggggcgcagcgtgaggcggctgcggcggtgcggcaccggccccggccccgcgccccggccctgccctgcccgcggcccggcgaggagcggcgcccgcgtggatgggatggaagcgggaccttcgggagcagctgcaggcgcatacctgccacccttgcagcaggtatttcaagcgccgcgtcggcccgggataggaactgttgggaagcccatcaagctcttagccaactactttgaagtggacattcccaagatcgatgtatatcattatgaagtggatatcaagcccgacaaatgcccacgcagagtcaacagggaagtcgtggagtacatggtacagcacttcaaacctcagatctttggcgaccggaagccagtctacgatgggaagaaaaacatttacactgttacagccttacccattggaaatgagagggttgactttgaggtgacaatcccaggagaaggcaaggacaggatatttaaggtctctatcaagtggatggccattgtgagctggcgcatgctccacgaagccctggtgagcgggcagatccctgtccctttggagtctgtccaggcactggatgtggccatgaggcacctggcttccatgaggtacacccctgttggccgctccttcttctccccaccagaaggctattaccaccccctgggaggtggcagggaggtctggttcggtttccaccagtctgtcaggcctgccatgtggaagatgatgctcaacattgatgtttctgcaacggccttctacaaagcccagcctgtaattgagttcatgtgtgaggtgctggatatccggaacatcgatgaacaaccgaagccactgacggactcacagagagtgcgtttcaccaaggagatcaaaggtttgaaagtagaggttacccactgtgggcagatgaagaggaaataccgtgtgtgtaacgttacccggcggccggccagccaccagacgtttcccctgcagctggagagcggtcagacagtggagtgcacagtggctcagtacttcaagcagaaatacaacctgcagctgaaataccctcacctcccgtgtctccaggttggccaagagcagaagcacacatacctgcccttggaggtgtgtaacatcgtggcaggccagcggtgcatcaagaagctcacagacaatcaaacatcaaccatgataaaagcaacggccaggtctgccccagacaggcaggaggagatcagccgcctgatgaagaatgccagctacaacctggatccgtacattcaggagtttgggatcaaggtgaaggatgacatgacggaggtgacggggagggtcctgccagcacctattctgcagtacggaggcaggaaccgagccattgcaactcccaaccagggcgtgtgggacatgcgagggaagcagttctacaacggcattgagatcaaagtctgggcgattgcttgctttgccccgcagaagcagtgtcgagaagaggtgctgaagaactttacagaccagctgcgcaagatctccaaggacgcagggatgccgatccaaggccagccctgtttctgtaaatacgcccagggtgcagacagtgtggagcccatgtttcggcacctcaagaacacctattcagggcttcagctcatcattgtcatcctgccaggaaaaacaccggtgtacgccgaggtgaagcgtgttggggacactctcctgggaatggccacgcagtgcgtccaggtcaagaatgtggtgaaaacctccccgcagaccctttccaacctctgcctcaagatcaacgtcaagcttggcgggatcaacaacatcctagtgcctcaccagcgctctgctgtctttcagcagccagtgatattcctcggggctgatgtcactcatccacctgctggagatgggaagaaaccctctataacagctgttgtgggcagcatggacgcccaccccagccggtactgtgccacagtgcgtgtgcagcgtcctcgccaggagatcattgaggatttgtcctacatggtaagggagctcctcatccagttctacaaatccacgcgcttcaaacccaccaggatcatattctaccgtgacggtgttcccgaggggcagctcccacagatccttcactacgagctcctagcaatccgagatgcctgcatcaaactggaaaaggattaccagcctggcatcacttatatcgttgtccagaaaaggcatcacacccgtctcttctgcgcagacaagaatgagaggattgggaagagcgggaacatcccagcaggaacaacagtggatacaaacatcactcaccctttcgagtttgacttctacttgtgcagtcatgcaggcattcagggtacgagccggccctcccattactacgtgctctgggatgacaaccggttcaccgcagatgagctgcagatcctcacgtaccagctgtgccatacctacgtgcgctgcacccgctcggtctccatcccagccccggcttactacgcccggctggtggcattcagagcgcggtaccacctcgtggacaaggagcacgacagtggcgagggcagccatatatctggacagagcaacggcagagacccccaggccttggcaaaggctgtgcaggttcatcaggacactttacgtaccatgtactttgcttgaaagcctaacttttgttacctcactcaagaaagctttcagatttgtaggagccatacaaaaaaggaagcattgggacaccttgtttttttttttccaatgagaaatcactgcagggcaggcagcgtcggttcgaggcaggagaccagcaccaccggacaggaagatccaacaccttcgtaggattggaagagactgattatttttttagttttttctggctttgcaaaattttgacctgaccaaacacatgaaggcattcaaggaagggataaaagtcccaggaggcggaagcaggttgtcatgtttaagatgcaatactatagactcctgactgtgaaaggcggatttggtcctccgttgcccaccaggcgctggtaggtattttttgtgggggttggggggaggggatttttagagccttaaaacagaagactagatttataaaactaatattttagaatatgagatgctttaatgggttaaggggaaaaaacaactagtttatagataactctaacactaacagttccccgcccccgagcgattccccccatataacgtaaggcaccctagcacttagctcagaactgaaaactgtcttccttgtgttaaaagctagttagctgctgccatttgaagcaacagtcacagacttttccatgggtgagtgccttactacgatgctgcaaaatttcaatgtttttaatcttgtaaggaaaatagtaatcttgtcttgatggtggtccatatttccatcggaaggagttaatttctatggtcctgagttgcagtttgtgttagatcacaacctcgtggtggttaaactccgttgaaagatgtgcactttcatataggacacgtttaatggctgctgacccatttttgtttccaatgtactacttgttatttaaaactgtttctgacaaatgggggcactgccatcccatgaggacagaaatcgctatcaatttcttttttttcttttttcttttttttttttcctgaatttctatgatggacaccgggatttttttactgagcattatttttatacgatactgagtctgttgccaaaacacacgagtcattcacatcctcagagtttacatcgccgcgctcgcaccagaggttcccaacgcttcctgtgtgtgttacacagtgtggccgtgcagctcggggcctctccactgttgtgctgctaccttgtgctgctctttgtgtcaccctattgctgatttcgtgcacggggtttttattctgaaagcacaccagagacgttccttagtcagaatgatcaaatccttgttaccgtcgtggggaagctcctcctgatctgtttttaacaggggaaaaaaaaaaaaaagccttttttgtttgtttgtttccaacagtaacatggtggctgcttttcagactcattttgctgcacagaatgaccattatgcacagcagggcagtagtaacaactcattaccaatatcacgtgggcagattgggtttttttctatatgaaaggtgtgcacaacgcttccttgaagagagaaactgtgtgcactcctgctgagctctcaggagaagagctctgttatcattttactgccaaaagtgaacgtgttttcagagcagatctgtcaccagcactgccccttgtcagtgcgcggatagaagcacacctttttgttttgtactttctgatgtttaaactcgccttgccttcatgaaatccatactagtcatgctggcccattgatctgtcctaatactgggaattcactctgcctgttttctttttgggcaacgtgtttgtgaacaatgaagacatcaatatgctatgcaaactaagtgctgagcccgctgatgtcacctttggtgaagatcctacatttagcacagttgtctttttcctcgagactgcagtatttggttcacattctcctttgcaccttgtgtcaaacaccactgctgtctgtctgcagggtggtggggaggagaccaggagctcttcgtggtcagtagggtaggaagtcttaggaaagcttttagagagcagggaatgcatcaacactaagcgtcaacgtgagaagcctacattcctatacacaagtgcctgcatagtgacacaaatccagcacctctccatttcatcctcagacctctggcttgtgttcattgaaagcaaaacgatctcagaggggctgtacctgctcacctcgtattagaaagcccctcgttaagaatcaaaccggggttaaggtcaaggttctctctgtaagtgggtttgttcaccagcattacaatggaaagcacctggctgctggcagcagcgaggggcaaaggtattttggttcctagtttttctttcttttagtgttttagttgggtctagaattctggaatgtcttttagtagccgtggcatagcacgtgccatttttaaccatttgaaaagagatagtgtgggcatttacagaaacagcttgttgctctgtaatgtttttttttttttaaccttgagacttgaaatgtaaaatggacctttaagatttgcactcatttgtaaggtggctgttcatagagaactatgaatgaagacttgctgatgtagcacctacttttaacagcaattttaactacacaaaagcttcacagcttctgaaacgctcagctggtgacttgcagatcgcgttctgcccttatttcaccctctgcattgggttttcatggttttgattcaataaaaaagccaaactcaatagctgctgtgccctttaagccgtatttccactttgaagatgttataaggggtttgagttacccgcatgttttctataacagactatgcactgtaccttctgcgcagctccagcattcaatatttctaccgttttcttgtccaagatgcaaacgaataagtgcatgtcaaggtgctgtgcattttgctacccgtagcagatagctgttaagccagagacatatcaggatctgtagttagccacaaaccccacgtggacatcccgaatggctcccgagtctctctgccttctcagtgcgcacgcgttccttctgcaactggaaacatcgccaagtgcatgcaagccttgtgggaagaggaataacttccatttgtctgtcggttgttggatgctgtgtgtttcccttgtctcatacctggacgtgacgggggcagtgggggtgtcccagtactcgcaagcctctgacctgatgcctcgtgtcacaaagcccgagcgttcagcgttgcctcgtggaaggttttcttcttggaaaatgagtgtgaaaataaagaaaagaatgtcattcttttaggaagggaagccagacagcaggacagcaataaacacatgaaattcatatcttgcctgagtgatttgcacttcgatagtcgtgaaagaaaattgatggggactccagtgcttttgtgttcagttctagcccctttcgtacctcctttatacaacaggtgttggactgtacatggggtgtttacaaacactctctttgggttgttatttttcttgcggttattttttttttgctttagcttgaactctctatggtccatttgttaaatagatgtgaacggttgatgtacagtacttactaaacaagcagcagcacaaaacttattttattaagaaaatatggcatatattttaaaggttgggtatcaacttttctttttttttctttttgtatgcgtggaattaagactggtgaagagtaacaaaacccttggattacatttggattaggccaaaagatgatactgtaagatcgtaaccacctctttattaaagaaaacggtatgattaaagagctccagaacattgtatttatatttgatttgattgctttggtggatttttttttttttaatttcaatttttttttttttgccttaatcctgatttttgcttgcaactttgacttcgcagtcccaagtgtctgttatcctgtaagtgttggcagaagacctaaataaaagcaatgtgaata
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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