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Previous release (v1)
2024-05-19 20:53:33, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001040465 6483 bp mRNA linear VRT 23-SEP-2023
DEFINITION Gallus gallus dicer 1, ribonuclease III (DICER1), mRNA.
ACCESSION NM_001040465 XM_421346
VERSION NM_001040465.2
KEYWORDS RefSeq.
SOURCE Gallus gallus (chicken)
ORGANISM Gallus gallus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
Phasianidae; Phasianinae; Gallus.
REFERENCE 1 (bases 1 to 6483)
AUTHORS Tang H, Finn RD and Thomas PD.
TITLE TreeGrafter: phylogenetic tree-based annotation of proteins with
Gene Ontology terms and other annotations
JOURNAL Bioinformatics 35 (3), 518-520 (2019)
PUBMED 30032202
REFERENCE 2 (bases 1 to 6483)
AUTHORS Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C,
Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S.
TITLE Manual GO annotation of predictive protein signatures: the InterPro
approach to GO curation
JOURNAL Database (Oxford) 2012, bar068 (2012)
PUBMED 22301074
REMARK Publication Status: Online-Only
REFERENCE 3 (bases 1 to 6483)
AUTHORS Fukagawa T, Nogami M, Yoshikawa M, Ikeno M, Okazaki T, Takami Y,
Nakayama T and Oshimura M.
TITLE Dicer is essential for formation of the heterochromatin structure
in vertebrate cells
JOURNAL Nat Cell Biol 6 (8), 784-791 (2004)
PUBMED 15247924
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
JAENSK010000215.1.
On Nov 3, 2021 this sequence version replaced NM_001040465.1.
##Evidence-Data-START##
CDS exon combination :: AB253768.1 [ECO:0000331]
RNAseq introns :: mixed sample support SAMEA103992290,
SAMEA103992323 [ECO:0006172]
##Evidence-Data-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-157 JAENSK010000215.1 16359846-16360002 c
158-223 JAENSK010000215.1 16343662-16343727 c
224-324 JAENSK010000215.1 16342695-16342795 c
325-517 JAENSK010000215.1 16335794-16335986 c
518-680 JAENSK010000215.1 16334783-16334945 c
681-811 JAENSK010000215.1 16334211-16334341 c
812-946 JAENSK010000215.1 16333502-16333636 c
947-1107 JAENSK010000215.1 16332540-16332700 c
1108-1276 JAENSK010000215.1 16331758-16331926 c
1277-1749 JAENSK010000215.1 16329271-16329743 c
1750-1882 JAENSK010000215.1 16325638-16325770 c
1883-2125 JAENSK010000215.1 16324223-16324465 c
2126-2280 JAENSK010000215.1 16323971-16324125 c
2281-2413 JAENSK010000215.1 16321813-16321945 c
2414-2489 JAENSK010000215.1 16321242-16321317 c
2490-2629 JAENSK010000215.1 16320023-16320162 c
2630-2809 JAENSK010000215.1 16317233-16317412 c
2810-3023 JAENSK010000215.1 16315016-16315229 c
3024-3177 JAENSK010000215.1 16314448-16314601 c
3178-3360 JAENSK010000215.1 16313645-16313827 c
3361-3466 JAENSK010000215.1 16313215-16313320 c
3467-3642 JAENSK010000215.1 16312948-16313123 c
3643-4426 JAENSK010000215.1 16311901-16312684 c
4427-4582 JAENSK010000215.1 16309929-16310084 c
4583-5465 JAENSK010000215.1 16305604-16306486 c
5466-5734 JAENSK010000215.1 16303527-16303795 c
5735-5897 JAENSK010000215.1 16300723-16300885 c
5898-5973 JAENSK010000215.1 16300546-16300621 c
5974-6483 JAENSK010000215.1 16299763-16300272 c
FEATURES Location/Qualifiers
source 1..6483
/organism="Gallus gallus"
/mol_type="mRNA"
/db_xref="taxon:9031"
/chromosome="5"
/map="5"
gene 1..6483
/gene="DICER1"
/gene_synonym="dicer"
/note="dicer 1, ribonuclease III"
/db_xref="CGNC:8359"
/db_xref="GeneID:423437"
exon 1..157
/gene="DICER1"
/gene_synonym="dicer"
/inference="alignment:Splign:2.1.0"
exon 158..223
/gene="DICER1"
/gene_synonym="dicer"
/inference="alignment:Splign:2.1.0"
exon 224..324
/gene="DICER1"
/gene_synonym="dicer"
/inference="alignment:Splign:2.1.0"
exon 325..517
/gene="DICER1"
/gene_synonym="dicer"
/inference="alignment:Splign:2.1.0"
misc_feature 371..373
/gene="DICER1"
/gene_synonym="dicer"
/note="upstream in-frame stop codon"
CDS 374..6139
/gene="DICER1"
/gene_synonym="dicer"
/EC_number="3.1.26.3"
/note="helicase-moi; dicer 1, ribonuclease type III"
/codon_start=1
/product="endoribonuclease Dicer"
/protein_id="NP_001035555.2"
/db_xref="CGNC:8359"
/db_xref="GeneID:423437"
/translation="
MKSPALQSLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVNSANQVAQQVSAVRTHSDLKVGEYSSLEVTESWTKEKWSQEFSKHQVLVMTCHVALTVLRNEYLSLSNINLLVFDECHLAIQDHPYREIMKICEDYPSCPRILGLTASILNGKCDPAELEEKIKKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGPYTDKSGLYGRLLRELDEALHFLNDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIHALCEEHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTSETETEPIVDDDDVFPPYVLRTDENSPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTRELPDHTFYSTLYLPINSPLRASIVGPPMSCARLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKPALEFKPTEADSAYCVLPLNIVDDSSTLDIDFKFMEDIEKSEARTGIPSTQYTKEMPFIFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTATDAGVGVKSLPADFRYPNLDFGWKKSIDSKSFISIPSSSLVENENYCKHSTIVVPENAAHQGANRTSSAEKHDQMSVSYRTLLDESPSKLQIDVSAELAAINGVSYNKNLANGNCDLVNRDFCQGNQLNYCRQEIPVQPTTSYPIQNLYSSENQPKPSNECTLLSNKYLDGNANRSTSDGCPKMTLTTSTSTALNLSKDKVDSEKNTSSGYSSKTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYIVNQDKSNTDKWEKDETTKENLLANGKLDYDDDDEEDEDLMWRLPKEETDFEDDFLEYDQEHIKFIDSMLMGSGAFVKKISLSHFSTTDSNYEWKAPKKSSLGNVPFSSDFDDFDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDAGKQSISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKKTDWESTLCATGENCNSEQKNLSPNSVSACIVNSEPSLYKDLEYGCLKIPPRCMFDHPDAEKTLNHLISGFENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVPNS"
misc_feature 497..1090
/gene="DICER1"
/gene_synonym="dicer"
/note="DEXH-box helicase domain of endoribonuclease Dicer;
Region: DEXHc_dicer; cd18034"
/db_xref="CDD:350792"
misc_feature order(497..508,515..517,566..589,710..712,899..901,
992..994)
/gene="DICER1"
/gene_synonym="dicer"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:350792"
misc_feature order(674..679,746..751,824..826,830..835,842..844,
917..925)
/gene="DICER1"
/gene_synonym="dicer"
/note="nucleic acid binding site [nucleotide binding];
other site"
/db_xref="CDD:350792"
misc_feature 896..907
/gene="DICER1"
/gene_synonym="dicer"
/note="propagated from UniProtKB/Swiss-Prot (Q25BN1.3);
Region: DECH box"
misc_feature 1184..1468
/gene="DICER1"
/gene_synonym="dicer"
/note="Partner-binding domain of the endoribonuclease
Dicer; Region: Dicer_PBD; cd15903"
/db_xref="CDD:277191"
misc_feature order(1199..1204,1211..1213,1217..1222,1397..1402,
1409..1414,1421..1423,1430..1435,1442..1444)
/gene="DICER1"
/gene_synonym="dicer"
/note="Trbp binding interface [polypeptide binding]; other
site"
/db_xref="CDD:277191"
misc_feature 1487..2065
/gene="DICER1"
/gene_synonym="dicer"
/note="C-terminal helicase domain of the endoribonuclease
Dicer; Region: SF2_C_dicer; cd18802"
/db_xref="CDD:350189"
misc_feature 1598..1672
/gene="DICER1"
/gene_synonym="dicer"
/note="propagated from UniProtKB/Swiss-Prot (Q25BN1.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature order(1718..1726,1934..1936,1991..1993,1997..1999)
/gene="DICER1"
/gene_synonym="dicer"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:350189"
misc_feature order(1946..1948,1952..1954,2027..2029,2033..2035)
/gene="DICER1"
/gene_synonym="dicer"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:350189"
misc_feature 2261..2527
/gene="DICER1"
/gene_synonym="dicer"
/note="Dicer dimerization domain; Region: Dicer_dimer;
pfam03368"
/db_xref="CDD:427264"
misc_feature 2552..2611
/gene="DICER1"
/gene_synonym="dicer"
/note="propagated from UniProtKB/Swiss-Prot (Q25BN1.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 3029..3397
/gene="DICER1"
/gene_synonym="dicer"
/note="PAZ domain, dicer_like subfamily. Dicer is an RNAse
involved in cleaving dsRNA in the RNA interference
pathway. It generates dsRNAs which are approximately 20 bp
long (siRNAs), which in turn target hydrolysis of
homologous RNAs. PAZ domains are named...; Region:
PAZ_dicer_like; cd02843"
/db_xref="CDD:239209"
misc_feature order(3218..3220,3257..3259,3275..3277,3287..3289,
3341..3343,3365..3367,3371..3373)
/gene="DICER1"
/gene_synonym="dicer"
/note="nucleic acid-binding interface [nucleotide
binding]; other site"
/db_xref="CDD:239209"
misc_feature 4181..4240
/gene="DICER1"
/gene_synonym="dicer"
/note="propagated from UniProtKB/Swiss-Prot (Q25BN1.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 4262..>4537
/gene="DICER1"
/gene_synonym="dicer"
/note="Ribonuclease III family; Region: RIBOc; smart00535"
/db_xref="CDD:197778"
misc_feature order(4313..4318,4325..4330,4337..4339,4346..4351,
4358..4363,4367..4375,4403..4405)
/gene="DICER1"
/gene_synonym="dicer"
/note="dimerization interface [polypeptide binding]; other
site"
/db_xref="CDD:238333"
misc_feature 5366..6124
/gene="DICER1"
/gene_synonym="dicer"
/note="dsRNA-specific ribonuclease [Transcription];
Region: Rnc; COG0571"
/db_xref="CDD:223644"
misc_feature 5717..5776
/gene="DICER1"
/gene_synonym="dicer"
/note="propagated from UniProtKB/Swiss-Prot (Q25BN1.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 5786..5788
/gene="DICER1"
/gene_synonym="dicer"
/note="Important for activity. /evidence=ECO:0000250;
propagated from UniProtKB/Swiss-Prot (Q25BN1.3); other
site"
exon 518..680
/gene="DICER1"
/gene_synonym="dicer"
/inference="alignment:Splign:2.1.0"
exon 681..811
/gene="DICER1"
/gene_synonym="dicer"
/inference="alignment:Splign:2.1.0"
exon 812..946
/gene="DICER1"
/gene_synonym="dicer"
/inference="alignment:Splign:2.1.0"
exon 947..1107
/gene="DICER1"
/gene_synonym="dicer"
/inference="alignment:Splign:2.1.0"
exon 1108..1276
/gene="DICER1"
/gene_synonym="dicer"
/inference="alignment:Splign:2.1.0"
exon 1277..1749
/gene="DICER1"
/gene_synonym="dicer"
/inference="alignment:Splign:2.1.0"
exon 1750..1882
/gene="DICER1"
/gene_synonym="dicer"
/inference="alignment:Splign:2.1.0"
exon 1883..2125
/gene="DICER1"
/gene_synonym="dicer"
/inference="alignment:Splign:2.1.0"
exon 2126..2280
/gene="DICER1"
/gene_synonym="dicer"
/inference="alignment:Splign:2.1.0"
exon 2281..2413
/gene="DICER1"
/gene_synonym="dicer"
/inference="alignment:Splign:2.1.0"
exon 2414..2489
/gene="DICER1"
/gene_synonym="dicer"
/inference="alignment:Splign:2.1.0"
exon 2490..2629
/gene="DICER1"
/gene_synonym="dicer"
/inference="alignment:Splign:2.1.0"
exon 2630..2809
/gene="DICER1"
/gene_synonym="dicer"
/inference="alignment:Splign:2.1.0"
exon 2810..3023
/gene="DICER1"
/gene_synonym="dicer"
/inference="alignment:Splign:2.1.0"
exon 3024..3177
/gene="DICER1"
/gene_synonym="dicer"
/inference="alignment:Splign:2.1.0"
exon 3178..3360
/gene="DICER1"
/gene_synonym="dicer"
/inference="alignment:Splign:2.1.0"
exon 3361..3466
/gene="DICER1"
/gene_synonym="dicer"
/inference="alignment:Splign:2.1.0"
exon 3467..3642
/gene="DICER1"
/gene_synonym="dicer"
/inference="alignment:Splign:2.1.0"
exon 3643..4426
/gene="DICER1"
/gene_synonym="dicer"
/inference="alignment:Splign:2.1.0"
exon 4427..4582
/gene="DICER1"
/gene_synonym="dicer"
/inference="alignment:Splign:2.1.0"
exon 4583..5465
/gene="DICER1"
/gene_synonym="dicer"
/inference="alignment:Splign:2.1.0"
exon 5466..5734
/gene="DICER1"
/gene_synonym="dicer"
/inference="alignment:Splign:2.1.0"
exon 5735..5897
/gene="DICER1"
/gene_synonym="dicer"
/inference="alignment:Splign:2.1.0"
exon 5898..5973
/gene="DICER1"
/gene_synonym="dicer"
/inference="alignment:Splign:2.1.0"
exon 5974..6483
/gene="DICER1"
/gene_synonym="dicer"
/inference="alignment:Splign:2.1.0"
ORIGIN
gaaggaggaggaggccgtcgcgggcccaggtgaatggaggaacctgacagttggggggagcaaggcggcggcagcggggaaatggcggtggcggcggcagcacaatgagacgcggcctgtagtggggtgcagcgcctggccgggtccgtccgagcaggttacctagggtgaaacaaaattacaggcttggaaactctggaaaagctcagcatcagtatttgagagccgaagcctgcaaattatgtgattaacctacaagctgatatcatgatgtcaaaatgcagtttggaaagcataagcacagaggctgcagagattaaaacgtaggctgtgctggaacaaaaacgcaatgacagaaacactggatgaatgaatgaaaagccctgctttgcaatccctcagcatggcgggactgcagctcatgacccctgcttcctccccaatgggtccattttttggactaccgtggcaacaagaagcaattcatgataacatttatacgccaagaaaatatcaggttgaactgcttgaagcagctttggatcataatacaatagtctgtttaaacactggctcagggaagacttttattgcagtactactcactaaagagctgtcctatcagatcaggggggatttcaacaaaaatggaaaaagaactgtgttcttggtcaactcagcaaatcaagttgctcagcaagtgtcagctgtcaggacacattcagatcttaaagtgggagagtattcaagtttagaggtaactgaatcatggacaaaagagaaatggagtcaggaattctctaagcatcaggttctggttatgacatgtcatgttgctttgactgttttgagaaatgagtatttatccctgtcaaatattaatctactggtgtttgatgagtgccatcttgcaatccaggaccatccataccgtgaaattatgaagatctgtgaggattacccatcttgccctcgaatcttgggattaactgcttccattttaaatgggaagtgtgatcctgctgagttagaagaaaagataaagaaactggagaaaatactaaagagcaatgctgaaactgcaactgatttggtggtcttagatagatatacttctcagccatgtgagattgttgtagactgtggaccatatactgacaaaagtggattgtacggaagactattaagggaattagatgaagcacttcattttctaaatgactgcaacatatctgtacattcaaaggaaagagattctacgttaatttctaaacagatattgtcagactgtcgagctgtgttggttgttctgggaccctggtgtgcagataaggtagctgggatgatggtgagagagctacagaagtatatcaaacatgagcaagaggagctgcacaggaaatttttattgtttacagacactttccttaggaaaatacatgcactctgtgaagagcatttctcacctgcctcacttgacctgaaatttgtaactccaaaagtaataaagctgcttgaaatcttgcgcaaatacaaaccatatgaacggcagcagttcgaaagtgttgaatggtataacaatagaaatcaggataattatgtatcatggagtgattctgaagatgatgatgaagatgaagagattgaggagaaagagaagccagagactaatttcccatctccttttacgaatattttatgtggaattatttttgtggaaagaagatacacagcagttgttctaaataggttgataaaagaagctggcaaacaggatccagaactggcttacatcagtagcaatttcataactggacatggcattggcaagaatcagcctcgtaacaagcagatggaagtagaattcagaaagcaggaagaggttcttagaaaatttcgagcacacgagaccaatcttcttattgctaccagtattgtagaagagggtgttgacataccaaaatgcaatttggtggtgcgttttgatttgcccacagaataccgttcctatgtgcagtcaaaaggaagagctagagcaccaatttccaattatataatgttagcagatacagacaaaattaaaagttttgaggaagatcttaagacatataaagcaattgagaagatcctgagaaataaatgctcaaaatctgttgataccagcgaaactgaaactgaacccattgttgatgatgatgatgtgtttccaccctatgtgctgagaacagatgagaacagtccaagagttactatcaacactgcaattggacacataaataggtactgcgctagattaccaagtgatccatttacacacctagctcccaagtgtaaaacccgagaactacctgatcatacattctactctactctctacctgccaatcaactcacctcttcgagcatcaattgttggtcctccaatgagttgtgcaagattggctgagagagttgtagctcttatttgctgtgaaaaactgcacaaaatcggtgaactggatgaccatttgatgccagttggaaaagaaacggttaaatatgaggaagagcttgatttacatgatgaagaagaaaccagtgtgccaggaagaccaggctctacaaaaagacgacagtgctaccctaaagctattccagaatgtttgagggatagttatcccaaacctgatcagccctgttacctgtatgtaataggaatggtgttaactactccattgcctgatgagctcaactttaggagacgaaagctatatcctcctgaggatacgacgagatgttttggcatattgacagccaaacctatacctcagattcctcactttcctgtgtatactcgctctggagaggttacaatatctattgagcttaagaaatctggttttactttgtctttgcaaatgcttgagctgataacacgactccaccagtacattttctcacatattcttcgtcttgagaaacctgcactagagttcaaacccacagaagctgattcagcctattgtgttctacctcttaacattgttgatgactccagcactttggacattgactttaagtttatggaagacattgaaaagtctgaagcgcgtacaggcattcccagtacacagtatacaaaagaaatgccttttattttcaagttagaagactaccaggatgcagttatcattccacggtatcgaaattttgatcagcctcatcgattctatgtagctgatgtatacactgatcttactccactcagtaaattcccttcccctgaatatgaaacttttgctgaatattataaaacaaaatataatcttgacctgaccaatctcaaccagccgctgctggatgtggaccacacatcttcaagacttaatcttttgactcctcgccatttgaatcagaaggggaaagcacttccactaagcagtgctgagaagaggaaggcaaaatgggaaagtctgcagaataagcagatactggttcctgagctatgtgctatacatcctattccagcatcgttgtggagaaaagcagtttgcctccccagcatactttatcgcctgcactgccttttgacagcagaggaactaagagctcaaacagccactgatgctggcgtaggggttaaatcacttcctgcagatttcagatatcctaacctggacttcggatggaaaaaatctattgacagcaaatctttcatctccatacctagctcctctttggtagagaatgaaaattactgtaagcacagcacaattgtagtccctgaaaatgctgcacatcaaggtgctaatagaacctcttctgcagaaaaacatgaccaaatgtctgtgagttacagaacactgcttgatgagtcacccagtaaactccaaattgatgtctcagcagaacttgcagcaattaatggtgtttcttataataaaaatcttgccaatggcaattgtgatttagttaacagagacttttgccaaggaaatcagctgaattactgcaggcaggaaatacctgtacaaccaactacctcatatcccattcagaatttatacagcagtgagaaccagcccaagcccagcaatgaatgtactctactgagtaataaataccttgatggaaatgctaacagatctacctcagatggatgccccaaaatgacattgaccaccagtacttcaacagctcttaatctttcaaaagacaaagtggattctgaaaagaacacttccagtgggtactcctcaaaaactcttggtcctaatcctggtctcattcttcaggctttgactctttcaaatgctagtgatggatttaatttggagcggctagaaatgcttggtgattcatttttaaagcatgccatcactacatacttgttttgcacttaccctgatgcgcacgagggacggctgtcatacatgagaagtaaaaaagtcagcaactgtaacttgtatcgccttggaaaaaagaaaggactgcctagtcgaatggtggtatcgatttttgatccccctgtcaattggcttcctcccggttacatagtaaaccaggacaagagcaacactgataaatgggagaaagacgaaacgacaaaggagaatttgttggctaatggtaaacttgattatgatgatgacgacgaagaggatgaagacctaatgtggaggttgcccaaggaagaaacagactttgaagatgattttttggagtatgatcaagagcatatcaaattcatagatagtatgttaatgggatcgggggcttttgtgaagaaaatttctctctctcacttttcaaccactgattcaaactatgaatggaaagcacccaaaaagtcatccctgggtaacgttccgttttcatcagattttgatgattttgactacagctcttgggatgctatgtgctatctggatcctagcaaggctgttgaagaggatgattttgtagtgggtttctggaatccatcagaagaaaactgtggtgtcgatgcaggaaaacagtctatctcatatgatttgcatacagagcagtgtattgctgacaaaagcattgcagactgtgtggaagccctgttgggctgctatctgaccagctgtggtgaaagagctgctcagcttttcctgtgttcactggggctgaaggtgctccctgtaattaaaaagactgattgggaaagcactctgtgtgcgactggagagaactgtaacagtgagcagaagaatctttcaccaaactctgtttctgcttgtatagttaattcagagccttctctttataaagacctggagtatggttgtttgaagatcccaccaaggtgtatgtttgatcacccagatgctgaaaaaaccctgaatcaccttatttctggttttgaaaactttgagaagaaaattaattacagttttaagaacaaggcgtatcttcttcaggcatttactcatgcctcataccattataataccattactgattgttaccagcgcttagaattcctgggagatgcaattttggactacctcataaccaagcacctttatgaagacccacggcaacactcaccaggagttcttactgacctgcgatctgctctagtcaataataccatttttgcatcgctagctgtaaagtatgactaccacaagtacttcaaagctgtctctcctgaactgtttcatgttattgatgactttgtgcagtttcaaatggaaaagaatgaaatgcaaggaatggattcagagctcagaagatctgaagaagatgaagaaaaggaggaagacattgaagtaccaaaggccatgggggatatatttgagtcccttgctggtgccatttatatggatagtggaatgtctttggaaatggtttggcaagtgtactatccaatgatgaggccattaatagaaaagttttctgctaatgtgccccgttctccagtgcgagagctgcttgagatggagccagagacggccaagtttagtcctgcagaaagaacttacgatgggaaggtcagagtaactgtggaagttgtaggaaagggaaagtttaaaggtgttggcagaagctacaggattgccaaatctgcagctgcgagaagagcactacgaagcctcaaagcaaatcaacctcaggtcccaaacagctgagactcctcttaaaataaataaaatgggggaaaaacacattcaaataaagcaaattttttaaaacggtgatgttgagaggaacaaattggaagacagaatttaaagtttgtttgataacagaatagataacaaaacatttaacatgtataaaattttggaactaattgtaggtatagttttttgcgcaaacacaatcttgtcttctttcctcacttctgctttgtttaatcacaagagtgctttaatgatgacatttagcaagtgttcagaataattgttgtcaggtctttttggtttacttttatcgtcagtacagctttgcttagtgttagaaggccagggag
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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