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Previous release (v1)
2024-05-05 04:39:55, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001030538 7651 bp mRNA linear VRT 23-SEP-2023
DEFINITION Gallus gallus Janus kinase 2 (JAK2), mRNA.
ACCESSION NM_001030538 XM_424809
VERSION NM_001030538.3
KEYWORDS RefSeq.
SOURCE Gallus gallus (chicken)
ORGANISM Gallus gallus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
Phasianidae; Phasianinae; Gallus.
REFERENCE 1 (bases 1 to 7651)
AUTHORS Tang H, Finn RD and Thomas PD.
TITLE TreeGrafter: phylogenetic tree-based annotation of proteins with
Gene Ontology terms and other annotations
JOURNAL Bioinformatics 35 (3), 518-520 (2019)
PUBMED 30032202
REFERENCE 2 (bases 1 to 7651)
AUTHORS Zhang Y, Zhang L, Zuo Q, Wang Y, Zhang Y, Xu Q, Li B and Chen G.
TITLE JAK-STAT signaling regulation of chicken embryonic stem cell
differentiation into male germ cells
JOURNAL In Vitro Cell Dev Biol Anim 53 (8), 728-743 (2017)
PUBMED 28597334
REMARK GeneRIF: our results suggested that JAK-STAT effectively promoted
the formation of primordial germ cells in the genital ridge during
early embryogenesis in vivo and played a positive role in the
regulation of embryonic stem cells to spermatogonial stem cells
differentiation in vitro, with JAK2 and STAT3 functioning as
pivotal factors for intracellular signal transduction
REFERENCE 3 (bases 1 to 7651)
AUTHORS Ban Q, Hui W, Cheng F, Liu D and Liu X.
TITLE Effect of chicken leptin recptor short hairpin RNA on expression of
JAK2, STAT3, SOCS3 and CPT1 genes in chicken preadipocytes
JOURNAL Anim Sci J 88 (3), 559-564 (2017)
PUBMED 27868312
REMARK GeneRIF: It is a gene related to signal transduction.
REFERENCE 4 (bases 1 to 7651)
AUTHORS Wu G, Liu L, Qi Y, Sun Y, Yang N, Xu G, Zhou H and Li X.
TITLE Splenic gene expression profiling in White Leghorn layer inoculated
with the Salmonella enterica serovar Enteritidis
JOURNAL Anim Genet 46 (6), 617-626 (2015)
PUBMED 26358731
REFERENCE 5 (bases 1 to 7651)
AUTHORS Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C,
Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S.
TITLE Manual GO annotation of predictive protein signatures: the InterPro
approach to GO curation
JOURNAL Database (Oxford) 2012, bar068 (2012)
PUBMED 22301074
REMARK Publication Status: Online-Only
REFERENCE 6 (bases 1 to 7651)
AUTHORS Liu WJ, Sun DX, Yu Y, Li G, Tang SQ, Zhang Y, Wang YC and Zhang Y.
TITLE Association of Janus kinase 2 polymorphisms with growth and
reproduction traits in chickens
JOURNAL Poult Sci 89 (12), 2573-2579 (2010)
PUBMED 21076094
REMARK GeneRIF: JAK2 polymorphisms may be potential molecular markers to
improve laying performance and growth traits in chickens.
REFERENCE 7 (bases 1 to 7651)
AUTHORS Melis S, Vellinga S, Zachee P, Sierens AC and De Schouwer PJ.
TITLE JAK2 V617F mutation and PRV-1 overexpression: relevance in the
diagnosis of polycythaemia vera and essential thrombocythaemia
JOURNAL Acta Clin Belg 64 (5), 429-433 (2009)
PUBMED 19999391
REMARK GeneRIF: JAK2 mutation screening is essential in the diagnosis of
polycythaemia vera and essential thrombocythaemia.
REFERENCE 8 (bases 1 to 7651)
AUTHORS Veneri D, Capuzzo E, de Matteis G, Franchini M, Baritono E, Benati
M, Solero GP, Ambrosetti A, Quaresmini G and Pizzolo G.
TITLE Comparison of JAK2V617F mutation assessment employing different
molecular diagnostic techniques
JOURNAL Blood Transfus 7 (3), 204-209 (2009)
PUBMED 19657484
REMARK GeneRIF: Detection of the JAK2(V617F) mutation may depend on the
molecular technique used. Considering that detection of this
mutation will not only have a diagnostic value, but also a role in
treatment given the development of JAK2(V617F) pathway inhibiting
drugs
REFERENCE 9 (bases 1 to 7651)
AUTHORS Sasaki E, Hikono H, Kaku Y, Kuwana T, Naito M and Sakurai M.
TITLE ephA9, a novel avian receptor tyrosine kinase gene
JOURNAL Gene 316, 103-110 (2003)
PUBMED 14563556
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
JAENSK010000090.1.
On Sep 23, 2021 this sequence version replaced NM_001030538.2.
Sequence Note: The RefSeq transcript and protein were derived from
genomic sequence to make the sequence consistent with the reference
genome assembly. The genomic coordinates used for the transcript
record were based on alignments.
##Evidence-Data-START##
Transcript exon combination :: AB159042.1, SRR13267649.58839.1
[ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMEA103992290, SAMEA103992323
[ECO:0000348]
##Evidence-Data-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-130 JAENSK010000090.1 306833-306962
131-196 JAENSK010000090.1 340576-340641
197-449 JAENSK010000090.1 344510-344762
450-573 JAENSK010000090.1 353614-353737
574-691 JAENSK010000090.1 354476-354593
692-837 JAENSK010000090.1 357430-357575
838-1159 JAENSK010000090.1 359289-359610
1160-1279 JAENSK010000090.1 361379-361498
1280-1437 JAENSK010000090.1 362566-362723
1438-1549 JAENSK010000090.1 364070-364181
1550-1736 JAENSK010000090.1 365899-366085
1737-1861 JAENSK010000090.1 367477-367601
1862-1996 JAENSK010000090.1 367976-368110
1997-2084 JAENSK010000090.1 369809-369896
2085-2212 JAENSK010000090.1 371752-371879
2213-2351 JAENSK010000090.1 372376-372514
2352-2503 JAENSK010000090.1 373137-373288
2504-2654 JAENSK010000090.1 374299-374449
2655-2791 JAENSK010000090.1 375101-375237
2792-2981 JAENSK010000090.1 376470-376659
2982-3106 JAENSK010000090.1 377351-377475
3107-3279 JAENSK010000090.1 380917-381089
3280-3397 JAENSK010000090.1 382589-382706
3398-3511 JAENSK010000090.1 384984-385097
3512-7651 JAENSK010000090.1 388208-392347
FEATURES Location/Qualifiers
source 1..7651
/organism="Gallus gallus"
/mol_type="mRNA"
/db_xref="taxon:9031"
/chromosome="Z"
/map="Z"
gene 1..7651
/gene="JAK2"
/gene_synonym="JAK-2"
/note="Janus kinase 2"
/db_xref="CGNC:11173"
/db_xref="GeneID:374199"
exon 1..130
/gene="JAK2"
/gene_synonym="JAK-2"
/inference="alignment:Splign:2.1.0"
exon 131..196
/gene="JAK2"
/gene_synonym="JAK-2"
/inference="alignment:Splign:2.1.0"
exon 197..449
/gene="JAK2"
/gene_synonym="JAK-2"
/inference="alignment:Splign:2.1.0"
CDS 230..3619
/gene="JAK2"
/gene_synonym="JAK-2"
/EC_number="2.7.10.2"
/note="tyrosine kinase; Janus kinase 2 (a protein tyrosine
kinase)"
/codon_start=1
/product="tyrosine-protein kinase JAK2"
/protein_id="NP_001025709.2"
/db_xref="CGNC:11173"
/db_xref="GeneID:374199"
/translation="
MACLTMANIEGSATATVHQNGDILGNTSAPKQTEPLLQVYLYYSPGKTGGDYLQFPAGEYVAEEICIVACKACGIMPVYHNMFALMSETERVWYPPNHIFHVDEATRLKLLYRIRFYFPHWYCNGTSRAYRYGIIRGSESPVLDDLVMSYLFAQWRKDFLDGWIQMPVTHETQEECLGMAVLDMMRVAKEKDQTPLAVYNSVSYKMFLPKCVRAKIQEYHILTRKRIRYRFRKFIQQFGQCKATARNLKLKYLINLETLQSAFYSEVFEVKEPGGDPSGEESFATIVITGNGGIQCSRGKLKNCETLAEQDLQTYCDFPDIIDVSIKQASQEGSSERRIVTIHKQDSKNLEAEFQSLREALSFVSLIDGYYRLTADAHHYLCKEVAPPSVLENIQSNCHGPIFMDFAINKLKKAGNQTGFYVLRCSPKDFKKYFLTFAIERENATDYKHCLITKNENGEYNLSGTKRSFGNLKDLLTCYQTETVRSDSIIFQFIKCCPPKPKDKSNLLVFRSNSVSDVPSSPTLQRHNVSQMVFHKIRNEDLIFEESLGQGTFTKIFKGIRKEVGDYGQLHQTEVLLKVLDKVHRNYSESFFEAASMMSQLSYKHLVLNYGVCVCGEENILVQEYVKFGSLDTYLKKNKNVINILWKLEVAKQLALAMHFLEDKGLVHGNVCAKNILLIREEDRKSGNLPFIKLSDPGISITVLPRDILLERIPWVPPECIENPRQLSLATDKWSFGTTLWEICSGGDKPLSALDSSRKLQFYEDRHQLPAPNWTELANLINNCMDYEPDFRPSFRAIIRDLNSLFTPDYELLTENDMLPNIRTGALGFSGAFEDRDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLRLIMEYLPYGSLRDYLQKHKERLDHKKLLLYASQICKGMEYLGTKRYVHRDLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEIYAIMKECWNNNVAQRPTFRDLAQRVDQIRDNMGG"
misc_feature 338..625
/gene="JAK2"
/gene_synonym="JAK-2"
/note="FERM F1 ubiquitin-like domain; Region: FERM_F1;
pfam18379"
/db_xref="CDD:436452"
misc_feature 578..580
/gene="JAK2"
/gene_synonym="JAK-2"
/note="Phosphotyrosine, by autocatalysis.
/evidence=ECO:0000250|UniProtKB:Q62120; propagated from
UniProtKB/Swiss-Prot (Q75R65.1); phosphorylation site"
misc_feature 647..1006
/gene="JAK2"
/gene_synonym="JAK-2"
/note="FERM F2 acyl-CoA binding protein-like domain;
Region: FERM_F2; pfam18377"
/db_xref="CDD:436450"
misc_feature 1019..1381
/gene="JAK2"
/gene_synonym="JAK-2"
/note="FERM domain C-lobe of Janus kinase (JAK) 2; Region:
FERM_C_JAK2; cd13333"
/db_xref="CDD:270141"
misc_feature order(1043..1045,1106..1108,1112..1114,1169..1171)
/gene="JAK2"
/gene_synonym="JAK-2"
/note="putative phosphoinositide binding site [chemical
binding]; other site"
/db_xref="CDD:270141"
misc_feature order(1181..1183,1196..1207,1319..1321,1331..1333,
1340..1345)
/gene="JAK2"
/gene_synonym="JAK-2"
/note="putative peptide binding site [polypeptide
binding]; other site"
/db_xref="CDD:270141"
misc_feature 1319..1354
/gene="JAK2"
/gene_synonym="JAK-2"
/note="putative actin binding site 2 [polypeptide
binding]; other site"
/db_xref="CDD:270141"
misc_feature 1379..1669
/gene="JAK2"
/gene_synonym="JAK-2"
/note="Src homology 2 (SH2) domain in the Janus kinase 2
(Jak2) proteins; Region: SH2_Jak2; cd10379"
/db_xref="CDD:198242"
misc_feature order(1439..1441,1499..1501,1574..1576,1580..1582)
/gene="JAK2"
/gene_synonym="JAK-2"
/note="phosphotyrosine binding pocket [polypeptide
binding]; other site"
/db_xref="CDD:198242"
misc_feature order(1577..1579,1664..1666)
/gene="JAK2"
/gene_synonym="JAK-2"
/note="hydrophobic binding pocket [polypeptide binding];
other site"
/db_xref="CDD:198242"
misc_feature 1853..2638
/gene="JAK2"
/gene_synonym="JAK-2"
/note="Pseudokinase (repeat 1) domain of the Protein
Tyrosine Kinase, Janus kinase 2; Region: PTK_Jak2_rpt1;
cd05078"
/db_xref="CDD:270663"
misc_feature order(1871..1873,1880..1885,1889..1891,1895..1897,
1955..1957,1961..1963,2096..2107,2117..2119,2237..2239,
2249..2254,2258..2260,2315..2317,2351..2365,2390..2392,
2495..2497)
/gene="JAK2"
/gene_synonym="JAK-2"
/note="active site"
/db_xref="CDD:270663"
misc_feature order(1871..1873,1880..1885,1889..1891,1895..1897,
1955..1957,1961..1963,2096..2107,2117..2119,2237..2239,
2249..2254,2258..2260)
/gene="JAK2"
/gene_synonym="JAK-2"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:270663"
misc_feature 2069..2071
/gene="JAK2"
/gene_synonym="JAK-2"
/note="V617F mutation site; other site"
/db_xref="CDD:270663"
misc_feature order(2237..2239,2249..2251,2351..2365,2390..2392,
2495..2497)
/gene="JAK2"
/gene_synonym="JAK-2"
/note="polypeptide substrate binding site [polypeptide
binding]; other site"
/db_xref="CDD:270663"
misc_feature 2312..2371
/gene="JAK2"
/gene_synonym="JAK-2"
/note="activation loop (A-loop); other site"
/db_xref="CDD:270663"
misc_feature 2750..3601
/gene="JAK2"
/gene_synonym="JAK-2"
/note="Catalytic (repeat 2) domain of the Protein Tyrosine
Kinase, Janus kinase 2; Region: PTKc_Jak2_rpt2; cd14205"
/db_xref="CDD:271107"
misc_feature order(2783..2791,2807..2809,2858..2860,2951..2953,
3005..3019,3023..3025,3146..3148,3158..3163,3167..3169,
3197..3202,3257..3271,3296..3298,3443..3445)
/gene="JAK2"
/gene_synonym="JAK-2"
/note="active site"
/db_xref="CDD:271107"
misc_feature order(2783..2791,2807..2809,2858..2860,2951..2953,
3005..3019,3023..3025,3158..3163,3167..3169,3197..3202)
/gene="JAK2"
/gene_synonym="JAK-2"
/note="ATP binding site [chemical binding]; other site"
/db_xref="CDD:271107"
misc_feature 2822..2824
/gene="JAK2"
/gene_synonym="JAK-2"
/note="Phosphotyrosine, by autocatalysis.
/evidence=ECO:0000250|UniProtKB:Q62120; propagated from
UniProtKB/Swiss-Prot (Q75R65.1); phosphorylation site"
misc_feature 3116..3118
/gene="JAK2"
/gene_synonym="JAK-2"
/note="Phosphotyrosine, by autocatalysis.
/evidence=ECO:0000250|UniProtKB:Q62120; propagated from
UniProtKB/Swiss-Prot (Q75R65.1); phosphorylation site"
misc_feature 3134..3136
/gene="JAK2"
/gene_synonym="JAK-2"
/note="Phosphotyrosine, by autocatalysis.
/evidence=ECO:0000250|UniProtKB:Q62120; propagated from
UniProtKB/Swiss-Prot (Q75R65.1); phosphorylation site"
misc_feature order(3146..3148,3158..3160,3257..3271,3296..3298,
3443..3445)
/gene="JAK2"
/gene_synonym="JAK-2"
/note="polypeptide substrate binding site [polypeptide
binding]; other site"
/db_xref="CDD:271107"
misc_feature 3197..3277
/gene="JAK2"
/gene_synonym="JAK-2"
/note="activation loop (A-loop); other site"
/db_xref="CDD:271107"
misc_feature 3239..3241
/gene="JAK2"
/gene_synonym="JAK-2"
/note="Phosphotyrosine, by autocatalysis.
/evidence=ECO:0000250|UniProtKB:O60674; propagated from
UniProtKB/Swiss-Prot (Q75R65.1); phosphorylation site"
misc_feature 3242..3244
/gene="JAK2"
/gene_synonym="JAK-2"
/note="Phosphotyrosine, by autocatalysis.
/evidence=ECO:0000250|UniProtKB:O60674; propagated from
UniProtKB/Swiss-Prot (Q75R65.1); phosphorylation site"
exon 450..573
/gene="JAK2"
/gene_synonym="JAK-2"
/inference="alignment:Splign:2.1.0"
exon 574..691
/gene="JAK2"
/gene_synonym="JAK-2"
/inference="alignment:Splign:2.1.0"
exon 692..837
/gene="JAK2"
/gene_synonym="JAK-2"
/inference="alignment:Splign:2.1.0"
exon 838..1159
/gene="JAK2"
/gene_synonym="JAK-2"
/inference="alignment:Splign:2.1.0"
exon 1160..1279
/gene="JAK2"
/gene_synonym="JAK-2"
/inference="alignment:Splign:2.1.0"
exon 1280..1437
/gene="JAK2"
/gene_synonym="JAK-2"
/inference="alignment:Splign:2.1.0"
exon 1438..1549
/gene="JAK2"
/gene_synonym="JAK-2"
/inference="alignment:Splign:2.1.0"
exon 1550..1736
/gene="JAK2"
/gene_synonym="JAK-2"
/inference="alignment:Splign:2.1.0"
exon 1737..1861
/gene="JAK2"
/gene_synonym="JAK-2"
/inference="alignment:Splign:2.1.0"
exon 1862..1996
/gene="JAK2"
/gene_synonym="JAK-2"
/inference="alignment:Splign:2.1.0"
exon 1997..2084
/gene="JAK2"
/gene_synonym="JAK-2"
/inference="alignment:Splign:2.1.0"
exon 2085..2212
/gene="JAK2"
/gene_synonym="JAK-2"
/inference="alignment:Splign:2.1.0"
exon 2213..2351
/gene="JAK2"
/gene_synonym="JAK-2"
/inference="alignment:Splign:2.1.0"
exon 2352..2503
/gene="JAK2"
/gene_synonym="JAK-2"
/inference="alignment:Splign:2.1.0"
exon 2504..2654
/gene="JAK2"
/gene_synonym="JAK-2"
/inference="alignment:Splign:2.1.0"
exon 2655..2791
/gene="JAK2"
/gene_synonym="JAK-2"
/inference="alignment:Splign:2.1.0"
exon 2792..2981
/gene="JAK2"
/gene_synonym="JAK-2"
/inference="alignment:Splign:2.1.0"
exon 2982..3106
/gene="JAK2"
/gene_synonym="JAK-2"
/inference="alignment:Splign:2.1.0"
exon 3107..3279
/gene="JAK2"
/gene_synonym="JAK-2"
/inference="alignment:Splign:2.1.0"
exon 3280..3397
/gene="JAK2"
/gene_synonym="JAK-2"
/inference="alignment:Splign:2.1.0"
exon 3398..3511
/gene="JAK2"
/gene_synonym="JAK-2"
/inference="alignment:Splign:2.1.0"
exon 3512..7651
/gene="JAK2"
/gene_synonym="JAK-2"
/inference="alignment:Splign:2.1.0"
ORIGIN
gctgtggcagcgggtaaagcgcggctcggcaacacgccgccgtgctgcctgctccggtagcgtgcatggagagggcgcgggtgctgaggggaagccgccagctcgcgctgcttcgccgagctcccgcgggatacattatgttctaccattgcctgtgtgcctgctttatctgacctcctgtggataccaacagcaagcaaatgttctgaacagaaacaaaacaaaaacaatggcctgtcttacaatggcaaatatagaaggctcagcaactgccactgtccaccagaatggtgacatccttgggaatactagtgcacccaagcagacagagccattgcttcaagtgtacctttattattcacctgggaagacgggaggagattatcttcaatttccagcgggagaatatgttgcagaagagatttgcattgttgcctgtaaagcatgtggtatcatgccagtgtatcataatatgtttgcactcatgagtgaaacagagagagtttggtatcctccaaatcacattttccatgtagatgaagcaaccagactaaagctactgtaccggataaggttttattttccccactggtattgcaatggcacaagcagagcatatcgctatggcattattcgaggttcagaaagccctgttcttgatgatcttgtcatgtcttacctatttgcacagtggcgaaaagattttttggatggttggatacagatgcctgttactcatgaaacacaggaagaatgccttggaatggctgttctggatatgatgagggtggccaaggaaaaggaccaaaccccactggctgtttacaactcagtcagctacaaaatgtttctgcctaaatgtgtgcgagcaaagatccaagaataccacattttgacccgaaaaagaataaggtacaggttccgtaaattcatacaacagtttggccagtgcaaagccactgccaggaacttgaaacttaagtatctcataaatttggaaacccttcagtccgccttctattcagaggtttttgaagttaaagaacctggtggagatccttccggagaagaaagttttgcaactattgtaataactggaaatggtggaattcagtgctcaagaggaaaacttaaaaactgtgagacactggcagagcaggatttacaaacatattgtgattttcctgatatcattgatgtcagcattaaacaagcaagtcaagaaggttccagtgagaggagaattgtcaccattcacaaacaagacagcaagaatctggaggctgaatttcagtctttaagagaagctctctcctttgtatcgttaattgatggatattacagattaactgcagatgcccaccattatctctgcaaagaagtagcaccaccatcagtgcttgaaaatatccaaagcaattgccatggaccaattttcatggactttgctatcaataaactgaagaaggcaggtaatcagactggcttctacgttcttcgttgcagtcctaaagattttaaaaaatacttcctcacatttgctattgagcgtgagaatgccactgactataaacactgcttaattacaaagaatgagaacggggaatataatcttagtggaaccaagcgaagttttggtaatcttaaggatctattgacttgttatcagacagaaactgtccgctcagacagcataattttccagttcatcaagtgctgtcctccaaaaccaaaagataaatcaaacctccttgtcttcagaagcaatagtgtctctgatgtaccttcatcaccaacattgcagaggcacaatgtcagccagatggtctttcacaaaatccggaatgaggacttgatttttgaagagagtcttgggcagggcacatttacaaagattttcaaaggcataaggaaagaagtgggagactacggccagcttcaccaaactgaagttcttttaaaggttttggataaagtgcatagaaactactctgagtccttctttgaggcagcaagtatgatgagccagctttcttacaaacatttggtattaaattatggagtctgtgtgtgtggagaggagaatatccttgtacaagagtatgtgaaatttggatctttggacacatacttgaaaaagaacaaaaacgttattaatatcttgtggaagctggaagttgccaaacagttggcactagccatgcatttcctggaggataaaggccttgttcatgggaatgtctgtgcaaagaacatcttgcttatcagggaggaggacaggaagtctggaaaccttccttttataaaactaagtgaccctggcatcagtatcacagttttgccaagagatattcttcttgagagaataccatgggttccacctgaatgtattgagaaccccagacaactaagcctagctacagataagtggagttttggtaccactttatgggaaatctgcagtggaggagacaaaccactgagtgctctcgattcttcaagaaaactacagttttatgaagatagacaccagcttcctgcccccaactggacagagctagcaaaccttataaacaactgtatggattatgagccagatttcaggccgtcatttagggcaattatacgtgacttgaatagtttgttcactcctgattatgagttattgacagaaaatgatatgttgccaaatatacgaactggagctcttggattttctggggcctttgaagatcgggacccaacacaatttgaagaaagacatcttaagtttttacagcaacttggcaagggaaactttggcagtgttgagatgtgccggtatgaccccctacaggataatactggagaggtggtggctgtgaaaaagctgcaacacagtacagaagagcaccttagggactttgaaagagaaattgaaatacttaaatctctgcagcatgataacattgttaaatacaaaggagtatgctacagtgcaggtcgtaggaatctgagattaattatggaatatctaccatatggaagtttacgagattatctgcagaaacacaaagagaggttggaccacaaaaagcttttgctatatgcatctcagatatgcaagggcatggagtatctgggtacaaaaagatatgttcaccgggatttagcaacaagaaatattttagtggagaatgagaacagagttaaaattggagattttggattgactaaagtcttgccacaagataaggagtactacaaagtgaaagaacctggtgaaagccctatattttggtatgctccagagtctctgacagagagcaagttttccgtggcctcagatgtatggagttttggtgtggtcttgtatgaactcttcacttacatcgaaaagagcaaaagcccaccagctgaattcatgcgcatgattggcaatgataaacaagggcagatgattgtatttcatttgatagagcttttgaagaacaatggacgactgccaagaccagatggatgccctgatgagatttatgctatcatgaaagaatgttggaacaataatgttgcccagcggcccacctttagggatcttgctcagcgagtggatcaaataagggacaacatgggtgggtgaggaaactgtccctccttaagagtgtatattaggatgcaggacaaaatgtacttggtctgctgtgtataattgacatatgtgcacatgtgcatctatctgtgctgggagtaaaatctgcatggcaaatatcttatatgaatctgcaaactgaggaatcctgctggttttctttatagggatatatttgttaccatgagaacatgttgaaattctcaatagggaaagaaatatttttctaaatggaataatataatgtatggtcagtctgcaacgccattatttaccttacttggcaatgcaaaaaaagaggtgacaaaatatggtaaaattcagaaactataagactatttccttgttgaaatggagatgcatagaaaagacacgtagtcttttcactgtgagtatatagtgagtgactgggcaccctgttttgtgtgttgcgcaagggcttggttttgttaacatgcttttataacttcttgttgttgttgcagaagtggcttctttgtatagcaaaatggaattggttatgtgatccaacaatttttaatgtgcctgtctgaatcaatgatcagtcagcaatatatgcaaagaaacatcggccatgtgatgtactgcaagtacttccagaggaaggaaaaggaagtgaattgtttgtaattgtaatttggacagccagataacttacttgtgtgagaactgtaatttaaaatggaaaagaaaacattaacaattttttcttattcttctttccccttaagtgttagattccctttacatgtttgaggatacagcggtagcaagtagaattgaagacatttcgtgtaagactgtcttcagtttgtttctgaatatgaaaaagccaaacatactgcttttgaatgttgatcttttactctttccatctttgaattttttatgctgtcctcagtgtatctgtaaattggaaactttctaaaaacagaattaaaaatatagaaattgcccttcaattcctcactttgttaccatcatgatcttctatgttccttccagtatcctaaaaaggtttattggctcagtgtatgatatggccagtcactactacattgagttgactttgagccaattcattttaaaaatccccccccccctttttttttttttttaaagacctagcctgtgactgtttggaaggagggaagtataagtgcaattgcttcacatttagctacaggcaagaacatgatcccagttactgagaactgcaaggaagtcaaagttacgtgtacagattactatgtgtagttccacttctgaagtaaattgaacaaatttatggacaaagcaattatttcattttgcctccaagcatggaacttgggaataatcttgtatcttaaagcagtaaaggtttcagattttgtttatttaaattcaaataatctggttatttttacgtagtcttagatgttgtttgtaaagtacaatgcttattgtccttgaacttttgctgaggttcaattaaggctacacaaactctcaaacccttaaaatccacacatgtatttaaagtgaagtgttcatttttaaaatctgtggcagtgaatttgtggaatggagggataacttcactgtgaggcctcattaacatttataattaattccatccatctactcagaagcttaactttaattaaaaagtaggaatttctgctcaatgtaacatagtgccagtatagcaatatttcataccactatgatctttctttcccacaattgcttgttcaaagttatgattttgtaatatgagagattgctaagtaggggggggcagcatcagccttctttctaccccttgcatttaataaaaattttgttgggttttcttccaatgaaactcttccacagaacctttaaactaattttgcaagcagtttataagctgcaaagaactttagagtactcttatatgtgtgttttctctgtttctgtatgctgctttcaagatgattttgaagtttcaggcaaggaacacctttgcatttgtactctcagttgtgtgtacatgttttttgtagcaaaagacgataaagctttaaggcatcaaagcagcattttagctggggtaatttatgcaggaactatgtaaaatttgcggtgtgtggcacttggtagctaactggtttcccatatatagtagactaaacataatttatgtaaaaatctcagggaagtttgtgtaatgcaatgaagagatcttccagtctgctattttttcaagtgaataaaaagtcttttgcttgttctactaccatatgtttgattacatagtctgtttgattgcttaaatatagtgtggaactcaaggataatttttttaagtgttttgtggactttttactttaatacttaataatttttagagaaagccatatctttacactgcagtataattttgtgctgttggtcaggagcatatgtcgtccattgtaccaagttggtctttgcaaagggcttgatcattcagaatgagtatccttagctggatgaataggaccaagtagtgcttaggactcaggggatgtgtgtgatcaactgcagtgtcaatgtttaggtcttggagcagacagaatcatggttttctcaaaaagctgtaaaggatgtaaatgcaatgatttgttgaatttgctaatgccacgtgtagtatcttttttaaaaataaaatgaaatttaagaaaacacacacaaaaaaaaaaacccaaaaaactgcgtttcaagagcaaatctatggtagatttgtagaatgctgtattttttatatcgtatttttattaacaggatcatttttttgtttttgaaactttcttcagttggcattgcatttgtcacacttcagtgtagtcaatatgctacccaaaatgctgtgatttattgtaggaaaattgctgttttatgtatacatgactgctgctacgatgtagaattaaaatactaactaccgctttgcacttattttaagtgaaaggattttcctgtaagtgcacaatgtatcttaaaaaaaaaaaaatctctgcagacaagtattgtataataaaatataatattggtttgttgcctatcagtataaatagtctaagcttcaaaatctatttttaaatacgcactgcaaccttgcaacagtcatgtaataagccagaggaggaatggattttcaagaaaagaaacccaaactttgccaagtcatattattgtttaaaagcttccattgttgagatatttactgctatacctacagataaaactattaaaaagatgttaaattattttaattagttttaaaaacaaagtctttaattgttgtgtttccttgagatatgaaccgctgtattgagatgtttgagaaaagatgttactgcgtgaagtataaggaaatgttactcttgtgtaaagaaagcaaacttttcaggaatgtatgagcacataaagctggaggatagactctgaaaacaggaatggaagaacaaaagaacaggaggactgttggaaaagtctgttgttaaacagtgaagaagcattctcaaatgcacaatgatttacaaaaacactgataatgtctactgcaaatgccgtatcattacaaatgtgctaatgtatttctgaactgtgtattgtctgcctttaatctaaaattgttagagacctttcctgactgaaaagtgtgagaatgactataccaaaagaaactgcttaaacttgttcaatgccagacagcaatcttaaagggtgtttaagttttttttcttttcctgaattttgctttttaaataagaggtttacaatactttatattaaagtcgaaaaagtccctttgggggaatggagaagaaaactcatgttacttgtagttgaactgcaaatattcggacacatggcttgttggagagaacatgaagggggatattttctagaaaactgtattaataactgaaacttaactgtgcatttcttttgagttttgttagtaaaaataaaataactgaacacaatgaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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