LOCUS       NM_001012820            2086 bp    mRNA    linear   VRT 23-SEP-2023
DEFINITION  Gallus gallus claudin domain containing 1 (CLDND1), mRNA.
ACCESSION   NM_001012820 XM_416577
VERSION     NM_001012820.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 2086)
  AUTHORS   Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C,
            Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S.
  TITLE     Manual GO annotation of predictive protein signatures: the InterPro
            approach to GO curation
  JOURNAL   Database (Oxford) 2012, bar068 (2012)
   PUBMED   22301074
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2086)
  AUTHORS   Hubbard SJ, Grafham DV, Beattie KJ, Overton IM, McLaren SR, Croning
            MD, Boardman PE, Bonfield JK, Burnside J, Davies RM, Farrell ER,
            Francis MD, Griffiths-Jones S, Humphray SJ, Hyland C, Scott CE,
            Tang H, Taylor RG, Tickle C, Brown WR, Birney E, Rogers J and
            Wilson SA.
  TITLE     Transcriptome analysis for the chicken based on 19,626 finished
            cDNA sequences and 485,337 expressed sequence tags
  JOURNAL   Genome Res 15 (1), 174-183 (2005)
   PUBMED   15590942
REFERENCE   3  (bases 1 to 2086)
  AUTHORS   Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P,
            Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci
            P, Hayashizaki Y and Buerstedde JM.
  TITLE     Full-length cDNAs from chicken bursal lymphocytes to facilitate
            gene function analysis
  JOURNAL   Genome Biol 6 (1), R6 (2005)
   PUBMED   15642098
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAENSK010000019.1.
            
            On Sep 23, 2021 this sequence version replaced NM_001012820.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AJ720437.1, HAEK01004560.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA103992290,
                                           SAMEA103992323 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-170               JAENSK010000019.1  34621-34790         c
            171-346             JAENSK010000019.1  34099-34274         c
            347-640             JAENSK010000019.1  28094-28387         c
            641-748             JAENSK010000019.1  27312-27419         c
            749-886             JAENSK010000019.1  26810-26947         c
            887-2086            JAENSK010000019.1  25502-26701         c
FEATURES             Location/Qualifiers
     source          1..2086
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="1"
                     /map="1"
     gene            1..2086
                     /gene="CLDND1"
                     /note="claudin domain containing 1"
                     /db_xref="CGNC:66314"
                     /db_xref="GeneID:418357"
     exon            1..170
                     /gene="CLDND1"
                     /inference="alignment:Splign:2.1.0"
     exon            171..346
                     /gene="CLDND1"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    343..345
                     /gene="CLDND1"
                     /note="upstream in-frame stop codon"
     exon            347..640
                     /gene="CLDND1"
                     /inference="alignment:Splign:2.1.0"
     CDS             352..1107
                     /gene="CLDND1"
                     /codon_start=1
                     /product="claudin domain-containing protein 1"
                     /protein_id="NP_001012838.1"
                     /db_xref="CGNC:66314"
                     /db_xref="GeneID:418357"
                     /translation="

MMDNRFATALVIACVLSLISTIYMAASLGTDFWYEYHTLSPAENITEAGRSIWEEFVSEEADEKTYTDALFRCNGTVGLWRRCITVPKNSHWYSPPETDMTTNCISFSLSDQFMEKYVEPGNHNSGTDLNRTYLWRLQFLLPFVSLGLMCFGALIGLCACACRSLYPAIATGVLHFLAGLCTLGLVGCYVAGIELLHKKLPLPGDVRGEFGWSFCLACVSAPLQFMAAALFIWAARTNRKEFTLLKAYRVA"

     misc_feature    403..1047
                     /gene="CLDND1"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:451326"
     exon            641..748
                     /gene="CLDND1"
                     /inference="alignment:Splign:2.1.0"
     exon            749..886
                     /gene="CLDND1"
                     /inference="alignment:Splign:2.1.0"
     exon            887..2086
                     /gene="CLDND1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ggggcggggcggtgtgcggccttatgactgctgcggcaccttcgattcggaagaaggttgcgacggactgcagttcccgtggtgccacttggcggggcgtagcgttggcccaggggcagctgcggcgcggaagtggtgcgcggggctggggatggaggtggttcgctgcggctgctgcttgtgcatcgatggcattgctggagcggtctgaatggagcagttagggccagcagggagttggcggtgtgtgcttctggcttactgcaggacgccggtagcacggtgtctctgaagtcacctgcaaccactggagctgcgtatgctgctggatctgaggagctctaagcagcaatgatggataaccgttttgctacagcactggtaattgcatgtgttctcagcctcatctccaccatatatatggcagcttcattgggcactgatttttggtatgagtatcacactctgtcccctgctgagaacattactgaagctggcaggagcatctgggaggaatttgtcagtgaagaggcagatgagaagacctacacagatgcactattccggtgcaatggcacagttgggttgtggaggaggtgcatcactgtacccaaaaactctcactggtacagcccaccagaaactgatatgactacaaactgcatcagtttttccctctctgatcagtttatggaaaagtatgtagagcctggaaatcacaacagtggcaccgatttgaatcggacttatctctggcgattgcagtttctcctgccatttgtcagccttggtctcatgtgctttggagctctgattgggctctgtgcatgtgcctgtcgcagcctataccctgccattgccactggagtcctccattttctcgcaggactttgtacactgggcctggttggctgctatgtagctgggattgagctgcttcataagaagctgcccctacctggtgacgtgaggggtgaatttggctggtccttctgcctagcctgtgtctcagcacctttgcagtttatggcagctgctcttttcatctgggcagctcgaaccaacagaaaggaattcactctcttgaaagcataccgtgtagcatagtaagtgttgctacccaagtattaggtttccatgtaacagacttccctcaacccttattacttttattcttcttttagacagaaatttggccttgtactgcttgtttcttgccagttgagacagtatagcctgcaggccctgaagacaaagacctttgggctaaattaccaaactttgccagaagtctgcagaacttatattaaaaaccatttttagaaactatatatattttaagctttctttggttgattttctttgaatatccccttagttaaatgtgtatctcttctgaattttattaccttgtcagcctggaggaaatagggaaggcattgtgatgtggaagtgagataaggaaagatgcagttaggcgagaatgggaactggggagtgcaaataatcacaagttgggcactctccataggccatagagcagacaagagacacgtggaaacagaagaacctgtgttatggaaatactgtagttaaatcagtcctgtagcttagctttaggtctcttattcttgctagtttgttacttcctatagcttctgcaaaaactgatgtaggcagagcagctagctctgggagtggttgcacagcacactaccctaaacagagaatctgtgctgcttttgctgtggaagagaagtttccctatatggaactttgtgctactctagatatgctgcttccaggtacctgcactacatgtgtttgtgcactctaatcttaacttgtgattttgcttgctgtgaaatagggctttcctctctcctgttatactgaaggcaaaccttcacaacttttttcactttgaatttgatttagtgtatgtgtgtatatgtacataatataaacttttgtaaaactcttattttacctatgtagcacacaacaggctcttttttaaaaggtgctgctcaattcccaccttgccccaaatctattgtttaagtgaaataaaacagtcctcaaa

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