2024-05-06 12:28:59, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001001460 4472 bp mRNA linear VRT 24-SEP-2023 DEFINITION Gallus gallus peroxisome proliferator-activated receptor gamma (PPARG), transcript variant 1, mRNA. ACCESSION NM_001001460 XM_015292931 XM_414308 VERSION NM_001001460.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE 1 (bases 1 to 4472) AUTHORS Seo Y, Kubota T, Sudo M, Toda N, Ogawa Y and Miyaguchi Y. TITLE Effects of dried natto diet on the transcript levels of the peroxisome proliferator-activated receptor-gamma, coactivator-1alpha and -1beta, and nuclear receptor corepressor 1 genes in laying hens JOURNAL Anim Sci J 92 (1), e13522 (2021) PUBMED 33624372 REMARK GeneRIF: Effects of dried natto diet on the transcript levels of the peroxisome proliferator-activated receptor-gamma, coactivator-1alpha and -1beta, and nuclear receptor corepressor 1 genes in laying hens. REFERENCE 2 (bases 1 to 4472) AUTHORS Tang H, Finn RD and Thomas PD. TITLE TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations JOURNAL Bioinformatics 35 (3), 518-520 (2019) PUBMED 30032202 REFERENCE 3 (bases 1 to 4472) AUTHORS Duan K, Sun Y, Zhang X, Zhang T, Zhang W, Zhang J, Wang G, Wang S, Leng L, Li H and Wang N. TITLE Identification and characterization of transcript variants of chicken peroxisome proliferator-activated receptor gamma JOURNAL Poult Sci 94 (10), 2516-2527 (2015) PUBMED 26286997 REMARK GeneRIF: Open reading frame analysis showed that five cPPARgamma transcript variants (cPPARgamma1 to 5) could encode two cPPARgamma protein isoforms (cPPARgamma1 and cPPARgamma2), which differ only in their N-terminal region. cPPARgamma1 was highly expressed in various chicken tissues. REFERENCE 4 (bases 1 to 4472) AUTHORS Huang JB, Zhang Y, Zhou YB, Wan XC and Zhang JS. TITLE Effects of epigallocatechin gallate on lipid metabolism and its underlying molecular mechanism in broiler chickens JOURNAL J Anim Physiol Anim Nutr (Berl) 99 (4), 719-727 (2015) PUBMED 25521589 REFERENCE 5 (bases 1 to 4472) AUTHORS Navidshad B and Royan M. TITLE Ligands and Regulatory Modes of Peroxisome Proliferator-Activated Receptor Gamma (PPARgamma) in Avians JOURNAL Crit Rev Eukaryot Gene Expr 25 (4), 287-292 (2015) PUBMED 26559088 REMARK GeneRIF: The most important metabolic effect of PPARgamma in chicken is its task in adipogenesis. Reviewing the ligands of chicken PPARgamma gene can be useful to a better understanding of PPARgamma regulatory functions. [Review] Review article REFERENCE 6 (bases 1 to 4472) AUTHORS Wang JT, Li S, Li JL, Zhang JW and Xu SW. TITLE Effects of cold stress on the messenger ribonucleic acid levels of peroxisome proliferator-activated receptor-{gamma} in spleen, thymus, and bursa of Fabricius of chickens JOURNAL Poult Sci 88 (12), 2549-2554 (2009) PUBMED 19903953 REMARK GeneRIF: The results indicate that the PPAR-gamma gene is expressed in all 3 immune organs and has different expression traits. The magnitude and direction of change in PPAR-gamma gene expression differs with the type of cold stress and the tissue. REFERENCE 7 (bases 1 to 4472) AUTHORS Sato K, Matsushita K, Matsubara Y, Kamada T and Akiba Y. TITLE Adipose tissue fat accumulation is reduced by a single intraperitoneal injection of peroxisome proliferator-activated receptor gamma agonist when given to newly hatched chicks JOURNAL Poult Sci 87 (11), 2281-2286 (2008) PUBMED 18931179 REMARK GeneRIF: Levels of PPARgamma mRNA in the abdominal fat pad of 7-d-old broiler chicks given a single dose of troglitazone at 1 d old were significantly greater than those in control chickens. REFERENCE 8 (bases 1 to 4472) AUTHORS Wang Y, Mu Y, Li H, Ding N, Wang Q, Wang Y, Wang S and Wang N. TITLE Peroxisome proliferator-activated receptor-gamma gene: a key regulator of adipocyte differentiation in chickens JOURNAL Poult Sci 87 (2), 226-232 (2008) PUBMED 18212364 REMARK GeneRIF: This was designed to investigate the function and regulatory mechanism of PPARgamma in chicken adipogenesis by RNA interference. REFERENCE 9 (bases 1 to 4472) AUTHORS Sato K, Fukao K, Seki Y and Akiba Y. TITLE Expression of the chicken peroxisome proliferator-activated receptor-gamma gene is influenced by aging, nutrition, and agonist administration JOURNAL Poult Sci 83 (8), 1342-1347 (2004) PUBMED 15339009 REMARK GeneRIF: findings suggest that peroxisome proliferatior-activated receptor-gamma plays an important role in the regulation of fat deposition and egg production in chickens REFERENCE 10 (bases 1 to 4472) AUTHORS Takada I, Yu RT, Xu HE, Lambert MH, Montana VG, Kliewer SA, Evans RM and Umesono K. TITLE Alteration of a single amino acid in peroxisome proliferator-activated receptor-alpha (PPAR alpha) generates a PPAR delta phenotype JOURNAL Mol Endocrinol 14 (5), 733-740 (2000) PUBMED 10809235 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JAENSK010000252.1. On or before Nov 24, 2021 this sequence version replaced XM_015292931.3, NM_001001460.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: SRR13267653.16437.1, SRR13267654.198789.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA103992290, SAMEA103992323 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-33 JAENSK010000252.1 1985183-1985215 34-261 JAENSK010000252.1 2015439-2015666 262-431 JAENSK010000252.1 2017277-2017446 432-570 JAENSK010000252.1 2018903-2019041 571-770 JAENSK010000252.1 2024661-2024860 771-1221 JAENSK010000252.1 2028970-2029420 1222-4472 JAENSK010000252.1 2036486-2039736 FEATURES Location/Qualifiers source 1..4472 /organism="Gallus gallus" /mol_type="mRNA" /db_xref="taxon:9031" /chromosome="12" /map="12" gene 1..4472 /gene="PPARG" /gene_synonym="PPARgamma; PPARgamma2" /note="peroxisome proliferator-activated receptor gamma" /db_xref="CGNC:3698" /db_xref="GeneID:373928" exon 1..33 /gene="PPARG" /gene_synonym="PPARgamma; PPARgamma2" /inference="alignment:Splign:2.1.0" misc_feature 15..17 /gene="PPARG" /gene_synonym="PPARgamma; PPARgamma2" /note="upstream in-frame stop codon" exon 34..261 /gene="PPARG" /gene_synonym="PPARgamma; PPARgamma2" /inference="alignment:Splign:2.1.0" CDS 42..1469 /gene="PPARG" /gene_synonym="PPARgamma; PPARgamma2" /note="peroxisome proliferative activated receptor, gamma" /codon_start=1 /product="peroxisome proliferator-activated receptor gamma" /protein_id="NP_001001460.1" /db_xref="CGNC:3698" /db_xref="GeneID:373928" /translation="
MVDTEMPFWPVNFGISPVDLSAMDDHMHSFDIKPFTTVDFSSISSPHYEDIPLGRADQTSIDYKYDIKLQDCQSAIKMEPPSPPYFSEKVQLYNKPHEESSNSLMAIECRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRCDLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAEKEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVIYDMNSLRMGEDQIKCKHASPLQEQNKEVAIRIFQRCQFRSVEAVQEITEFAKNIPGFVNLDLNDQVTLLKYGVHEIIYTLLASLMNKDGVLISDGQGFMTREFLKSLRKPFCDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMTDLRQIVTEHVQLLQIIKKTETDMSLHPLLQEIYKDLY"
misc_feature 42..275 /gene="PPARG" /gene_synonym="PPARgamma; PPARgamma2" /note="PPAR gamma N-terminal region; Region: PPARgamma_N; pfam12577" /db_xref="CDD:432648" misc_feature 363..614 /gene="PPARG" /gene_synonym="PPARgamma; PPARgamma2" /note="DNA-binding domain of peroxisome proliferator-activated receptors (PPAR) is composed of two C4-type zinc fingers; Region: NR_DBD_Ppar; cd06965" /db_xref="CDD:143523" misc_feature order(366..368,375..377,417..419,426..428,474..476, 489..491,519..521,528..530) /gene="PPARG" /gene_synonym="PPARgamma; PPARgamma2" /note="zinc binding site [ion binding]; other site" /db_xref="CDD:143523" misc_feature order(390..404,420..425,429..431,435..437,441..446, 453..455,510..515,522..524,531..533,564..566,573..587, 591..593) /gene="PPARG" /gene_synonym="PPARgamma; PPARgamma2" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:143523" misc_feature order(504..509,513..518) /gene="PPARG" /gene_synonym="PPARgamma; PPARgamma2" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:143523" misc_feature 660..1463 /gene="PPARG" /gene_synonym="PPARgamma; PPARgamma2" /note="The ligand binding domain of peroxisome proliferator-activated receptors; Region: NR_LBD_PPAR; cd06932" /db_xref="CDD:132730" misc_feature order(885..890,900..902,1002..1004,1014..1016,1023..1025, 1050..1052,1056..1058,1125..1127,1380..1382) /gene="PPARG" /gene_synonym="PPARgamma; PPARgamma2" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:132730" misc_feature order(915..917,924..926,936..938,951..953,966..971, 975..980,987..992) /gene="PPARG" /gene_synonym="PPARgamma; PPARgamma2" /note="coactivator recognition site [polypeptide binding]; other site" /db_xref="CDD:132730" misc_feature order(1152..1154,1218..1220,1227..1229,1254..1256, 1323..1325,1335..1337,1344..1346,1350..1355,1362..1367, 1386..1388) /gene="PPARG" /gene_synonym="PPARgamma; PPARgamma2" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:132730" exon 262..431 /gene="PPARG" /gene_synonym="PPARgamma; PPARgamma2" /inference="alignment:Splign:2.1.0" exon 432..570 /gene="PPARG" /gene_synonym="PPARgamma; PPARgamma2" /inference="alignment:Splign:2.1.0" exon 571..770 /gene="PPARG" /gene_synonym="PPARgamma; PPARgamma2" /inference="alignment:Splign:2.1.0" exon 771..1221 /gene="PPARG" /gene_synonym="PPARgamma; PPARgamma2" /inference="alignment:Splign:2.1.0" exon 1222..4472 /gene="PPARG" /gene_synonym="PPARgamma; PPARgamma2" /inference="alignment:Splign:2.1.0" ORIGIN
acagtttctccggctgagacttgacagcgccagagattacaatggttgacacagaaatgccgttttggcccgttaattttggaattagcccagtggatctgtctgcgatggatgatcatatgcattcctttgacataaagccatttaccactgttgatttttcaagcatttcttcaccacactatgaagatatacctcttggaagagctgatcaaacaagcattgattataaatatgatatcaagctccaggattgccaaagtgcaatcaaaatggagcctccttctcctccctatttttctgaaaaagtgcagttatacaataaacctcatgaggagtcttccaactcacttatggctattgaatgtcgtgtgtgtggggacaaggcctctggatttcattatggagtgcatgcatgtgaaggttgtaagggcttttttcgaagaacaatcagattaaagcttatttatgataggtgtgaccttaattgtcgcatccataagaaaagcagaaataagtgtcaatactgcagatttcagaaatgtcttgcagttggaatgtcacataatgccatcaggtttgggcgaatgccacaagcggagaaggagaagctcttggcagagatttccagcgacatcgaccagttaaatcctgaatctgctgatctgcgagcgcttgccaagcatttgtatgactcatacataaagtccttccctctgaccaaagccaaggcaagggcgatcttgacaggaaagacgacagacaaatcaccatttgttatttatgacatgaactctttaaggatgggagaagatcagatcaagtgtaagcatgcatcaccactgcaggaacagaacaaagaagtagcaattcgcattttccagcgatgtcagtttcgctctgtggaggcagtgcaggagattacagaatttgcgaagaacattccaggttttgtgaatcttgacctgaatgatcaggtaactctcctgaaatatggtgtccatgagatcatatatactctcctggcttctctcatgaataaagatggagttcttatatctgatggacaaggattcatgacacgggagtttctgaagagtctgagaaaacctttttgtgactttatggagcccaagtttgagtttgctgtgaagttcaatgcactggaattagatgacagtgacctggcaatatttatagctgtcattatactaagtggagatcgcccaggtttgttaaatgtgaagcccattgaagatatacaagataatctgttgcaagctttggagctccagctaaagctgaatcatccagagtcatcacagctgtttgcaaaattgcttcagaaaatgacggacctcagacaaattgtaacggaacacgtgcagctgttgcaaataataaagaaaacggaaacagatatgagtcttcatccactcctacaagaaatctataaagacttatattaatggcgatagtagttcttatcctctgacataatgtatgttcttcagattgcactatttctttgagagaaaactttgcatacttaagaaattactgtgaaacagcatttaaagaagagagagcttagtatagtagatctattttatgcatattgtttataaagacacatttacaatttacttttaatattaaaaatatctatatcatgaaattgttggcagtattttcagaattaatttttttaactatcttatttcctaaaattgcttgtccagtatgattgatgcttgcttcactgaggttggttaagcatgcagttaaattttcaacttaaaaataaaaatctttctccttaaacatttctagggaaacattttaagtattatgtttgattctgtgctcccaaggcagcggcaaaataacaatgaagttgaatcatggattagcacaacttcacacaaggactcaaaaggtaaaagttagacatgtcaggtctagtagttgttcctaccataataaattttcaaactgatagagttctgtaatgaggactttgtatacgtatgaattaggcccatcatttatgggcactcaaaaacttgactccatttcaagcattaattgaggaatatacactgctcatcactttcttagagattcttaggaagcagccttttcacttgctctgctcatacagttccaagactggagaagcagtctgcatggagatgcagtgcagctgcctctctgccattatctgcaatgcacatgccacaccagctagtgctaatgcagccttcagctactctgggaagtctgttgctggaatgggttcacatcataccaaagttatttgatgaactctcattgaaaaatatactcagtcaaaatgctgtggaaaattggaataggatgacacctcttaaataaaagcaagatttgaattcattcttgaaaacataaacctgtaatggaaaccctagtatattaatttgacttgagatgtcattatttatcactgggaatgagaatgcttttgagaggttcgatgctttaaggctgctaattttattttatacattgctctatagtgtcaaacaagatttccacagggagcaaagtataggagaatgcgtaaattttttagaagtaaatttagttacactatcttcttttggtattctcagtccaattgtgagattcccttagattcacatgtattgtggccacatttactgtttgtgaatgtgtttcagaaactaaagcaagtatgatccacagtgatgtgctcaagaatggaattttggaaagaaaaaagaaagccactaattgtaacacatactattgaagcaaggagtggtccttaattgaatacgtggcaagaagtgtgccttaaacttagacacatttactgatgatatgtaagcagaccaaaagggagtagaattgggaataggtgatcaggctcaattttcagtgagtctaaatccgccttcctaccaatgtggcccttggaaatcttagttggtacaaaaagaggctgtcagaattaaatattaaaataaatccttaagcttatgccttacatacctgaaaatatttcctactacttatttcagacaaactctgggcctatggtcagtagtgagcattatgcctaccaggaagtgattggagaattggatcattcagcctcaaggtttaaaatccacagatgagatttcagtgagatgaagtcagtgtgaggctaaacagctttgatcttcactaagtttcaggtaacttaggaaaattgccctacaacaaatggcgtgttgtttgttaatgctcaaattgcatgttttcctgcactttagatttaggtacgttgtgtgaactgagcattagattctgacagggattacatgcacggtattttgtggctgttaccattcaaaagaagtttttctcacgaatttgttttccactgggcactggccatttgaagttttgccatctatcacttagtggagaacctctgtttaatcgcagagttcatcccctcctgtaggaggacatatcaaagactaactggtaccaagatagaccacagttccaacaccaaattcctataatagtaacacactgtcaaaaatattaatctgagactgcatttcccatacaatccaatttcacattggtatcactagaaataagataccagaattagttttaaataaagaggaatgctgaggcatattcttacataagttattattaaacgttatttgaaaaggacagtggaaaaggtgctttgaaaatgaaattaaattagtgactttgttacagtaagaatttctgtgtaactaagaagcacattaactcagagaccatcgttctacttcattccaagtggtagtacttctagaagtatcagtttagcagttgcactgcttgaggatttcagcctaacgcagacatatgcaattcatatattttgagagtggtaatgtaatggcagtcataatgctctaaggatagaagagaagacagatttgcaggaacaggtgttgtcctttataattatggggggactgaatgcccaaatagcctatacttttaattcaactgtataagctgctttaataaaatatatcgttctccctacatcctggcttctcttacattttgataatttttcatcatgttttcctcaagccatggaaaatgttaatttttatgtgaattactaatcacagaaatgttctaattctaaacggttacatcatggttaggaagttttgcctaaaatacttttctacaagaataggtcttaagggaaaaatgttcatttaatggacaattgctgtgtactaatttagaacaaatgactgttatgaggatatgaaaacattttctcaaaaaacagtgttttctcttgtgaattatgttcagaattttgatctaattgtaaatacttcttgtttctatgggattttatttattaaaaaacaaacaaaaaaaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]