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Previous release (v1)
2026-01-19 00:20:49, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XM_009866322 2106 bp mRNA linear VRT 24-OCT-2014 DEFINITION PREDICTED: Apaloderma vittatum testis- and ovary-specific PAZ domain-containing protein 1-like (LOC104271604), partial mRNA. ACCESSION XM_009866322 VERSION XM_009866322.1 DBLINK BioProject: PRJNA263608 KEYWORDS RefSeq; includes ab initio. SOURCE Apaloderma vittatum (bar-tailed trogon) ORGANISM Apaloderma vittatum Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Coraciimorphae; Trogoniformes; Trogonidae; Apaloderma. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_009707735.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Apaloderma vittatum Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 91% of CDS bases ##RefSeq-Attributes-END## COMPLETENESS: incomplete on the 3' end. FEATURES Location/Qualifiers source 1..2106 /organism="Apaloderma vittatum" /mol_type="mRNA" /isolate="BGI_N311" /db_xref="taxon:57397" /chromosome="Unknown" /sex="male" /geo_loc_name="Tanzania" gene 1..>2106 /gene="LOC104271604" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:104271604" CDS 1..>2106 /gene="LOC104271604" /codon_start=1 /product="testis- and ovary-specific PAZ domain-containing protein 1-like" /protein_id="XP_009864624.1" /db_xref="GeneID:104271604" /translation="
MPQLRSGKVVTASEVKSTDGIVASPSCLVTEVGCEPQRKLVVEQSPLLTPKRKPKQPLSSRLQPATLTSVSSEQFVPLVPIQKKKKQAKEKWKAIDQDPGTQAMKQLKTNQNRSEDSKEKEPHYSESPMVATSDGTPTEKNPFVRLEACSYINAFVSSSASGSTSSFKLSGFFHVAQDKSKRVFPDGTVEESGMNCKTSRMQSERSPIKGSLFNEDKTQTGEGYFSCCQCENSKCLTGKKWNNGRKSRKKINIIEKSTVQNIFTDVANGCSELQTEAAVAVSSSFAVLGLNHKASTLSASCDDTANLHMGKNTCEAQNTSVWRKNSTKLPSFEDNFKKTSELSVIAKEENANSVLHHSDASGNLRVPAWVHGASNCHKSKTNEKLNKANKKLQRFTCQRTVPMTGKKVWPCESCARTSEWVHKNHKSISEGKRLLKAAFKESSDKSNVKAIGNSAVTKNLRQFDLPTSPAEVKESTHEITDPDTECLTSLETPESSSRNIYGTLRMSKENVESPVNIDGSAVAFSHDDMQEVKATLNFPTKQKDKNKRSLRKRNLSVTVQNDTSTVDHSVALEINDNSRSSGDLSQHKSQDFSDVLEAYKEDVLVIDVIEDDPDLFGTNSEKELAFADFEDCPVKVSYMGTCIKEEKQDLKPEYPVMSENRDSVDDNFRGSSPSGGITEGFLEDGRLRELDELSESFDMDEK"
ORIGIN
atgccgcagttaaggtcagggaaggtggtaactgccagcgaggtgaaatcgactgacgggattgttgccagcccaagctgtctggttacagaggtaggatgcgagccacagagaaagctggtggtggagcagagtcctctcctgacaccaaagagaaaacccaagcagcccttgtcttcccgtctccaacctgccacactcaccagtgtttcctctgagcagtttgttcctctcgtgccaatccagaaaaagaaaaagcaagcaaaggaaaaatggaaagcaattgatcaagatcccggtacacaggctatgaagcagcttaagacaaatcaaaacagatcagaagattccaaggaaaaggagcctcactactctgaatctcctatggttgctacttcagatgggactccaacagaaaagaatccgtttgtgaggttagaggcctgtagttacatcaatgcatttgtgagttcttcagccagtggaagtaccagtagttttaagttaagtggattcttccatgtagcccaggataaaagtaagcgtgtttttcctgatggtactgtagaagagagcggtatgaactgtaaaactagtagaatgcaaagcgagaggtcacccataaaaggtagcttgtttaatgaagacaaaactcaaactggagaagggtatttttcatgctgtcagtgtgagaacagtaagtgtttaacgggaaaaaagtggaataatggtagaaagtcaagaaaaaagattaacatcattgagaaatcaacagtgcagaacatttttacagatgtggctaatggatgcagtgagttacaaacagaagcggcagttgctgtgtcaagctcctttgcagtcttaggactaaatcataaagcaagtactctgtcagcttcatgtgatgatacagcaaatcttcatatgggaaaaaatacttgtgaagcacaaaatacatcagtctggagaaagaatagtaccaaactaccttcatttgaggataacttcaagaagacatctgagctctctgtaatagcaaaagaagaaaatgcaaacagtgtgctgcatcattctgatgcctcaggcaacctgagagtgccagcttgggtacatggtgcttctaattgtcacaaaagcaaaacaaatgaaaaattgaacaaagctaataagaaactgcagcggtttacctgtcaaagaacagtacctatgactggtaaaaaagtttggccttgtgaatcttgtgccaggacttcagaatgggttcataaaaatcacaagtccatctcagaaggaaaaagacttttaaaggctgccttcaaggaatcctctgataaaagcaatgttaaagctataggaaatagtgctgtgaccaagaatttgagacagtttgatttgcccacatcaccagcagaagttaaagaatctacacatgaaataacagatccagataccgaatgtctgacttcacttgaaacaccagaatcctcttctaggaatatttatgggactttgagaatgagcaaggaaaatgtggagtcaccagttaatatagatggaagtgctgtggcttttagccatgatgatatgcaagaagttaaagcaaccttgaattttccaactaaacaaaaagataaaaataaacgatctctaagaaaaagaaacctgtctgtgacagtccaaaatgatacatctacagttgatcactctgttgcattagaaataaatgacaatagcagatcaagtggggatctttcgcagcacaaaagccaagatttttcagatgttcttgaagcttacaaagaagatgttcttgtcattgatgtgattgaggatgaccctgacctttttggaaccaatagtgaaaaggaacttgcatttgcagactttgaagattgtcctgtgaaggtgtcctatatgggcacctgtattaaggaagaaaagcaagatcttaagcctgaatatcctgttatgtcagaaaacagagattcagtagatgataattttagaggaagcagtccttcgggaggtattactgagggcttccttgaagatgggcggctgagagaactagatgaactttcagagagttttgacatggatgaaaag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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