LOCUS       NM_001400770            4397 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus similar to human chromosome 5 open reading frame
            24 (C17h5orf24), mRNA.
ACCESSION   NM_001400770 XM_003751644
VERSION     NM_001400770.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4397)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000017.1.
            
            On Apr 7, 2023 this sequence version replaced NM_001400770.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ228424.1, SRR26643292.57018.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840110, SAMN12840117
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-226               JAXUCZ010000017.1  8937901-8938126     c
            227-4397            JAXUCZ010000017.1  8928209-8932379     c
FEATURES             Location/Qualifiers
     source          1..4397
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17p14"
     gene            1..4397
                     /gene="C17h5orf24"
                     /gene_synonym="RGD1566359"
                     /note="similar to human chromosome 5 open reading frame
                     24"
                     /db_xref="GeneID:498701"
                     /db_xref="RGD:1566359"
     exon            1..226
                     /gene="C17h5orf24"
                     /gene_synonym="RGD1566359"
                     /inference="alignment:Splign:2.1.0"
     exon            227..4397
                     /gene="C17h5orf24"
                     /gene_synonym="RGD1566359"
                     /inference="alignment:Splign:2.1.0"
     CDS             230..799
                     /gene="C17h5orf24"
                     /gene_synonym="RGD1566359"
                     /codon_start=1
                     /product="UPF0461 protein C5orf24 homolog"
                     /protein_id="NP_001387699.1"
                     /db_xref="GeneID:498701"
                     /db_xref="RGD:1566359"
                     /translation="

MMHPVAGGNPAFCGPGKPPCLSDDAAMRAADQFDLYSSQQSKYSHTVSHKPMLCQRQDPLNEAHLQPTSGRNTEIKDELKKKKNLNRSGKRGRPSGTTKSAGYRTSTGRPLGTTKAAGFKTSPGRPLGTTKAAGYKVSPGRPPGSIKALSRLADLGYGCGTAAFPYPMMHSRVVHGVQETSGEVKPPSE"

     misc_feature    230..796
                     /gene="C17h5orf24"
                     /gene_synonym="RGD1566359"
                     /note="Family of unknown function (DUF5568); Region:
                     DUF5568; pfam17724"
                     /db_xref="CDD:465471"
ORIGIN      

attccggggctgtggcggtctcttcctcccgcgtccggggcccgcggtgagggctcttgggagtcgggcgctggcgtgggcctcgccgccgccgccgccggccctctgccgtgactggactgggccgcacggagagggcgcggccggactgaacggaacgggcgggggctttcctgcctatgggcggcccctgggcgctctgagggccgggctccgagcggccgaggaaatgatgcacccggttgcaggcgggaacccagcgttctgcgggcctggcaagcctccctgcctcagtgatgacgccgccatgagagccgctgatcagtttgatctgtactcctcccagcaaagcaagtacagccacacagtcagccacaaacccatgctctgtcagaggcaagacccattaaacgaagcacacttgcagcctaccagtggcagaaacacagagataaaagatgaactaaagaaaaagaaaaacctcaatcgatctggtaagcgaggccggccttcgggaaccaccaagtcagcaggataccggaccagcacaggcagacccctgggaaccaccaaagcagctggatttaagaccagtccaggcaggcctctgggtacaaccaaagctgcaggatacaaagtcagcccaggcaggcctccaggtagcattaaagctctgtcccgtcttgcagatcttggttatggctgtggcactgctgcctttccttaccctatgatgcacagtagagtggttcacggggttcaggaaacgagtggtgaggtcaagccacccagtgaatgagcgagacaggagagcacgtgctaggagcaaattgttagtcaccccaaagcttcttgctttaatttgacataatcataccacgtggactccccagttctgtttctgtttgctttccctcaccccgcacttctttttctttctttttagctcagaagctgccacaattgagaggtgcactttgggcaggagtagtacattgtgtctgtgttgtacacggttcacaggacaggacactcagctcagtcgtctatgctttccctttgggctgttctaagtggactccttttacttgtgagtaatccagagcgaggcactgtaactgaagcggggagcagcaactagtgagcagatgggcggggaaggctgtgaaataagacacagctctctggatgctttggaacttaaaacacagcttcttctttattgattcgcatggcattagtgatcatcattcctaaagcactgtgcagtgtctgcctcgaagagagcatagttacagggtgtgtgttttcagttgcctaagagcatatgcaccaaacactacaaacagctcaaacccttgagtacgtcagaaacctgcacagcatatttaatatacaagaaaaaagaacccttagaagtctgcatgtaactatagtcattctgttttgtgtttcatatacttagtattatattttaaaacatttattactattgttcatttatttaaaaaaatttttttttttttagtttttctgcgtaattgttattacacttcattagtacttaattgcattttcaggtttatacctaccaaaggacacaaattgagtggtcaactgcaaaattggtctaagcaggaagcagtgtcctggctgtcaggacccaaataccaataaatgtaacttggtatgcgcgaaacctgtgaaatgagcgctgggtagcataaaaatggcagcatggctccaggatgaccgtttcttccaaaagaaggctccctggtgcggcttgctttagacacagtgtagaaaagtcaagtactgggcatgaaggtatactcatttagggtaatctttggaaatgtttcctgttaatacacattttatttattttgaatttgttctgagtaaactgttataaactttaagattgaaaagctttccgtgggtcaggtatggaggcccaggaatttgattccagcatttgggaggctgaggcaggcagagctctgagtgtgtgaggtctacatagtgccaggacagccaatgctaggtagagagaccctatctttaaaaaaacaacaaagaaaagcttttactgaacttaaaaaattatgttttttacttgcattttaaatgcttttgagaataaaatgtagatttaaaggacttaaaaactttaaaaataatcagaaatttaaaagggacacacgtactggttggttaggcttgctctcagtccatgcaaactgactgtatgtaaataccatgtttcagacctctgtcgggggacaagcagcaaatctcaggtgccccatgatagctgacacaacagctgggcatccgctcctgcagtagtacgtgctttattatgtgtggagactgtaacctcagcagtaccagcttcgcacaaaccacaggggacagtgagcaatgctggacgaccactgaaccagcctagaatataaaactgaatgacttattcagaacagtgtaacttctggcacatgcagatgcttgtcttcattggcgtgttcatctgtcacgtagctgtttctgaagttgttcagcagctggctgttgagaattccttgcaaggctagttcctgaggacagttgaaatagtctagtctagaatgtcaaggacttgggtgcatgttgtgtttcctcatgagtctacatggcatcctttcagtttgatttccttcctgattttctaccttgtcatttcttcttgccctttcccacacctatccccttccctcagctctccagcacatctactcagtggtgctgtgctgtgtgtcagaagatagagtgggtggcttgtatatgttgatgacagtgtttgtattaggagcttgatcccaggaacaggggtggatggatggatggctacagttgtgagtggatgacgtcacttaggaaactgcgagcagcacttgggatatgaaatgtgtgcactggtgaacacctgattctacttttctccctgtggacagtttaccagtgccacgttggagaggcacggtgaggacaggaaggaagtcttcacataaaaatatttttgcttctacatgatctaaagactgcattctgcatcttttgtaacatggtcctttgtcatgacagacactgaaatagcatgtgaaacattgcctagatgccagtatattcagtcggggaaaactgttgtcccctacccccaccccactgtataattgttccttaaaaggtaaattgctaattttatactgtgtgattctattcttcataaataggtttcactattctatattaaactttgtcagaaaatgatctactattcaagtaagtttgttttacttttttctgaaaaggatattttacatgccttatttattattgttatcaaaacaaataaggggtcaatacagatgaaaatttcactttccacagctatcaccttgcctaattaatctttagtatggggtgattttgatactatctttggagttttgcactggatatttaaaaatatatattggcacaatatattgaaaaattaaatagtatttggtttaatttttaatatttgaaacattttttaattagtgtttaaatcagactaacaattctttgtatttttaattacttttttaaaagggacatctgaaaagtggtatttattcattccaaactggtgtttgtgtgaatttacatatattttcatgaaatatgagtaggatttctttgaggtaaaatctggatccatttattatcaggttaaagacgcttcatccagtgtaataataaccacagtgtgtaagtttaaatggtgaacttcttcatgctttaagaagctttaagagaacagttcaggggatactaagatgattgctctgtcagttccttgtctatatgcagtaaaactttatgatccgttacagcagtgtaacagttcacaacagtcttgggcataaaaagttttgatgctcttttaatctgtctgttctagcataatgactgcgttcaaactcttaagatgtatctaaatatttgcttttctcccttttccttccaagtagacagacctgtgctctcacatacaatgtatttaagtttttagaagtgatgctgtagtaagtcagtcgtgtgatttaatcaggccactcttgattctttgattcacagtttcctttttccacagacaattatgagaaacaattaccagttaactgataataagcacgttgtcctctgctgtaaaaagtctgaatagatactgtgtatgtttccatgtccatgaacttaagctactcgtgtgcagttatgtgtatggaatggagtagtgttcatgatttgtatctacatcatcatatggatgtatatttattaataaagtcatcactttaaaacca

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