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2024-03-28 18:53:08, GGRNA : RefSeq release 222 (Jan, 2024)

Summary:

Results:

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Rattus norvegicus uncharacterized LOC120102432 (LOC120102432), ncRNA. (2790 bp)
cccacggaagacaacacactttccaatttaaatataattggaaataagttgagaaaggatgagacagttggagggcagtaaacatttggttacattttctcaaccttgaagatgaagcctgtgtcctatgaacacagtaggcctattgcataacaatctggttggaagatttatgggaagggctgagaatgctggaatctatcacaactcatgtttttacaactcttctcttatcatttcctgaccacccccctccagtctgtgtggtttgtccactgttacacattctcatgaggtcattatgacctcatttgccttatcagagattctattcataatttcctagtgctgaggaaatttttatcaactgagaaaggcttctgaaagctttaaatgtgtgactgcttcagccttccctgtgcagtggactttgtgggtgaccacttcagtgtcctacagtgaatttttttttttttttggttctttttttttcggagctggggaccgaacccagggccttgcgcttcctaggtagaaatgacccatcccctcctgagtgttagtgggaggcacgctctgacaccgtcagtttctgcggcc...
position 944
XR_005504060.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus NudC domain containing 3 (Nudcd3), transcript variant 2, mRNA. (3589 bp)
cgggcagctgcgaggagtaaagccatcctcactgggcacagtgcttccctgaatagaaatgaggttccgttactaaggaaggaaagggatataaatgctggtgagtcatcggcacagatcgggggatgctgaggtaagtttattcacactgagggtgaagtttttctgtgaggacattttgggagcactgttcagtcagtgacagtctggggtccctctgggaaattattatgttctgggaccaggcagataaaagaggacctggaaaatgaaagtgtatccaggaaatgatgaggtcacagtgaccttgtagagggcacctaattctgacccaatgaatggttcagagtgactttctaaaccactgagaaaagaggccaggaggcaggtgctcactttagcagtgcttatgccctgtcagtaagtagaaactggctgcaaggtcaggtgtcccaacctgtcgggaggtgggacctcataggaacctaagatcttgacatttggtatgttggtgacaatgtgggaagccctgggatgagagggaacatccttgcaggacgcctgcaggtggaccacagacacacctgggtacctcaggag...
position 1194
NM_001103362.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus uncharacterized LOC102551617 (LOC102551617), ncRNA. (4573 bp)
cttaggagaaatttctagatagtacatccagaaatctttctttgcccgagtcagtcttctgctagtttttctggaaagactctgaacaatagtaagtagtatgataatggacaatacccttctcattactcccctagcccctgtgagcatcagctgtcccttacagggagttgaatatataatgttctgcgataactttaaaaaggaatgcaagaatgattttgctttttgcccgtgctttcaatacttcctcttaagcatagttcatatcatagatggaattcttttactacaggtcattatgacctgcaaggcaggcagagggtatttgtcgtgtaaatggaaggctcccaatatgaagtttcagtatcgctgtcagcaaaggatacctatttcccaagttcactggctgtagaaagaaccagattccctttaggggcaactcatcacagtattatacctttcgcaggaccatagacacttgtcttctctgacatggaactataactatatgtacttcaaaattttaccatgttttccctaatgtctaaagttcctaagaggacgataaaagaactaggacactctgttcatcttttc...
position 2167
XR_362411.4 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus hypothetical protein LOC100362814 (LOC100362814), transcript variant X5, mRNA. (10111 bp)
aatgtttagttgattcggacaagtaaaatacagcattataaatcagattccctttaaactagacaccgtgtgttcaagaagcctatgcaaagaaaaccttaaattaatgaaaaaattcatagtcatattttcccaccatgattaaagcctcctgggactgagatgttgttccttccctaaagagtctcctaatcttagcatagaagactctgagaagttcagatggttaaaatcatgagatataaaagtgagctgaagttccacaggcacccagaggaggctgcagtgagctcaggtcatcatgaccttcgacagtccccgaagccatagaggatctcagtggtttggaaggaggaagccaaactccagacaagtggagggttgagccccagcctgctgattcatgccccagcctgctctccatttcaccaagctgcctgttcacttggggacacatttctctaactgtgcccaggggaaaaaaaaaaaaaggcagggtttatgtgagagattccatattgctcttgccaaaagaaaagtaaaagaaagaaagaaaaaaaaaaccaatttggctgtttccagagagttccactggagact...
position 6958
Synonym: RGD1310754
XM_039106457.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus hypothetical protein LOC100362814 (LOC100362814), transcript variant X4, mRNA. (10456 bp)
aatgtttagttgattcggacaagtaaaatacagcattataaatcagattccctttaaactagacaccgtgtgttcaagaagcctatgcaaagaaaaccttaaattaatgaaaaaattcatagtcatattttcccaccatgattaaagcctcctgggactgagatgttgttccttccctaaagagtctcctaatcttagcatagaagactctgagaagttcagatggttaaaatcatgagatataaaagtgagctgaagttccacaggcacccagaggaggctgcagtgagctcaggtcatcatgaccttcgacagtccccgaagccatagaggatctcagtggtttggaaggaggaagccaaactccagacaagtggagggttgagccccagcctgctgattcatgccccagcctgctctccatttcaccaagctgcctgttcacttggggacacatttctctaactgtgcccaggggaaaaaaaaaaaaaggcagggtttatgtgagagattccatattgctcttgccaaaagaaaagtaaaagaaagaaagaaaaaaaaaaccaatttggctgtttccagagagttccactggagact...
position 7303
Synonym: RGD1310754
XM_017592182.2 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus hypothetical protein LOC100362814 (LOC100362814), transcript variant X3, mRNA. (10457 bp)
aatgtttagttgattcggacaagtaaaatacagcattataaatcagattccctttaaactagacaccgtgtgttcaagaagcctatgcaaagaaaaccttaaattaatgaaaaaattcatagtcatattttcccaccatgattaaagcctcctgggactgagatgttgttccttccctaaagagtctcctaatcttagcatagaagactctgagaagttcagatggttaaaatcatgagatataaaagtgagctgaagttccacaggcacccagaggaggctgcagtgagctcaggtcatcatgaccttcgacagtccccgaagccatagaggatctcagtggtttggaaggaggaagccaaactccagacaagtggagggttgagccccagcctgctgattcatgccccagcctgctctccatttcaccaagctgcctgttcacttggggacacatttctctaactgtgcccaggggaaaaaaaaaaaaaggcagggtttatgtgagagattccatattgctcttgccaaaagaaaagtaaaagaaagaaagaaaaaaaaaaccaatttggctgtttccagagagttccactggagact...
position 7304
Synonym: RGD1310754
XM_039106456.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 (St8sia5), transcript variant X7, mRNA. (12563 bp)
ggctgtcctgtgagaagtccttcctcatactaagtgtgaccctttttcctgtgctcactaggagcttctacttgctttttattgcttcacagagcactaacatccatccgtcctctctgcagctgtccctgatgtgttggaaagcatcaatacttccccttcttcctggccctggaacccagtctccaacattccctcccctagctctactattcctcaagacttcagccattacccaccccaccccagtcttacattaacacatgcccacgaagcgttatctgctattgtcaaggtcactgtgacctctaagtggtcatatcagtgccaccttcccttcttccttgaccccactggcactgggtggagctgtcccttgtgtcctgaaaaggcccttggtccctgggctccacatcctggtttgtcctcgttcctgcataccgttcttctcagtctaacctcaggcctgtctttccccctccccacctctaagagctcatggggtgtctctgtccatcgactctggatcgtgtgttttgtcctgtgcatcccatttgtacctgactcttacctgctgcctctcaccctctgatggctgag...
position 3990
Synonym: SATV; SIAT8-E; SIAT8E; ST8SiaV
XM_039097015.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 (St8sia5), transcript variant X6, mRNA. (12723 bp)
ggctgtcctgtgagaagtccttcctcatactaagtgtgaccctttttcctgtgctcactaggagcttctacttgctttttattgcttcacagagcactaacatccatccgtcctctctgcagctgtccctgatgtgttggaaagcatcaatacttccccttcttcctggccctggaacccagtctccaacattccctcccctagctctactattcctcaagacttcagccattacccaccccaccccagtcttacattaacacatgcccacgaagcgttatctgctattgtcaaggtcactgtgacctctaagtggtcatatcagtgccaccttcccttcttccttgaccccactggcactgggtggagctgtcccttgtgtcctgaaaaggcccttggtccctgggctccacatcctggtttgtcctcgttcctgcataccgttcttctcagtctaacctcaggcctgtctttccccctccccacctctaagagctcatggggtgtctctgtccatcgactctggatcgtgtgttttgtcctgtgcatcccatttgtacctgactcttacctgctgcctctcaccctctgatggctgag...
position 3985
Synonym: SATV; SIAT8-E; SIAT8E; ST8SiaV
XM_039097014.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 (St8sia5), transcript variant X5, mRNA. (12732 bp)
ggctgtcctgtgagaagtccttcctcatactaagtgtgaccctttttcctgtgctcactaggagcttctacttgctttttattgcttcacagagcactaacatccatccgtcctctctgcagctgtccctgatgtgttggaaagcatcaatacttccccttcttcctggccctggaacccagtctccaacattccctcccctagctctactattcctcaagacttcagccattacccaccccaccccagtcttacattaacacatgcccacgaagcgttatctgctattgtcaaggtcactgtgacctctaagtggtcatatcagtgccaccttcccttcttccttgaccccactggcactgggtggagctgtcccttgtgtcctgaaaaggcccttggtccctgggctccacatcctggtttgtcctcgttcctgcataccgttcttctcagtctaacctcaggcctgtctttccccctccccacctctaagagctcatggggtgtctctgtccatcgactctggatcgtgtgttttgtcctgtgcatcccatttgtacctgactcttacctgctgcctctcaccctctgatggctgag...
position 3991
Synonym: SATV; SIAT8-E; SIAT8E; ST8SiaV
XM_039097013.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
PREDICTED: Rattus norvegicus hypothetical protein LOC100362814 (LOC100362814), transcript variant X2, mRNA. (12666 bp)
aatgtttagttgattcggacaagtaaaatacagcattataaatcagattccctttaaactagacaccgtgtgttcaagaagcctatgcaaagaaaaccttaaattaatgaaaaaattcatagtcatattttcccaccatgattaaagcctcctgggactgagatgttgttccttccctaaagagtctcctaatcttagcatagaagactctgagaagttcagatggttaaaatcatgagatataaaagtgagctgaagttccacaggcacccagaggaggctgcagtgagctcaggtcatcatgaccttcgacagtccccgaagccatagaggatctcagtggtttggaaggaggaagccaaactccagacaagtggagggttgagccccagcctgctgattcatgccccagcctgctctccatttcaccaagctgcctgttcacttggggacacatttctctaactgtgcccaggggaaaaaaaaaaaaaggcagggtttatgtgagagattccatattgctcttgccaaaagaaaagtaaaagaaagaaagaaaaaaaaaaccaatttggctgtttccagagagttccactggagact...
position 9513
Synonym: RGD1310754
XM_008762075.3 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)
Rattus norvegicus RIKEN cDNA D430041D05 gene like (D430041D05Rikl), mRNA. (12584 bp)
aatgtttagttgattcggacaagtaaaatacagcattataaatcagattccctttaaactagacaccgtgtgttcaagaagcctatgcaaagaaaaccttaaattaatgaaaaaattcatagtcatattttcccaccatgattaaagcctcctgggactgagatgttgttccttccctaaagagtctcctaatcttagcatagaagactctgagaagttcagatggttaaaatcatgagatataaaagtgagctgaagttccacaggcacccagaggaggctgcagtgagctcaggtcatcatgaccttcgacagtccccgaagccatagaggatctcagtggtttggaaggaggaagccaaactccagacaagtggagggttgagccccagcctgctgattcatgccccagcctgctctccatttcaccaagctgcctgttcacttggggacacatttctctaactgtgcccaggggaaaaaaaaaaaaaggcagggtttatgtgagagattccatattgctcttgccaaaagaaaagtaaaagaaagaaagaaaaaaaaaaccaatttggctgtttccagagagttccactggagact...
position 9431
Synonym: RGD1310754
NM_001419547.1 - Rattus norvegicus (Norway rat) - NCBI - UCSC - RefEx(expression)

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lang : en | div : | spe : rn | query_string : iubcomp:aggtcannrtgacct | format : html | download :

0.000 | 0.000 | search_start;
0.116 | 0.115 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((nt:aggtcataatgacct)%7C(nt:aggtcatattgacct)%7C(nt:aggtcatagtgacct)%7C(nt:aggtcatactgacct)%7C(nt:aggtcattatgacct)%7C(nt:aggtcattttgacct)%7C(nt:aggtcattgtgacct)%7C(nt:aggtcattctgacct)%7C(nt:aggtcatgatgacct)%7C(nt:aggtcatgttgacct)%7C(nt:aggtcatggtgacct)%7C(nt:aggtcatgctgacct)%7C(nt:aggtcatcatgacct)%7C(nt:aggtcatcttgacct)%7C(nt:aggtcatcgtgacct)%7C(nt:aggtcatcctgacct)%7C(nt:aggtcacaatgacct)%7C(nt:aggtcacattgacct)%7C(nt:aggtcacagtgacct)%7C(nt:aggtcacactgacct)%7C(nt:aggtcactatgacct)%7C(nt:aggtcactttgacct)%7C(nt:aggtcactgtgacct)%7C(nt:aggtcactctgacct)%7C(nt:aggtcacgatgacct)%7C(nt:aggtcacgttgacct)%7C(nt:aggtcacggtgacct)%7C(nt:aggtcacgctgacct)%7C(nt:aggtcaccatgacct)%7C(nt:aggtcaccttgacct)%7C(nt:aggtcaccgtgacct)%7C(nt:aggtcaccctgacct))?source=Rattus norvegicus (Norway rat)?to=0&format=json
0.591 | 0.476 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((nt:aggtcataatgacct)%7C(nt:aggtcatattgacct)%7C(nt:aggtcatagtgacct)%7C(nt:aggtcatactgacct)%7C(nt:aggtcattatgacct)%7C(nt:aggtcattttgacct)%7C(nt:aggtcattgtgacct)%7C(nt:aggtcattctgacct)%7C(nt:aggtcatgatgacct)%7C(nt:aggtcatgttgacct)%7C(nt:aggtcatggtgacct)%7C(nt:aggtcatgctgacct)%7C(nt:aggtcatcatgacct)%7C(nt:aggtcatcttgacct)%7C(nt:aggtcatcgtgacct)%7C(nt:aggtcatcctgacct)%7C(nt:aggtcacaatgacct)%7C(nt:aggtcacattgacct)%7C(nt:aggtcacagtgacct)%7C(nt:aggtcacactgacct)%7C(nt:aggtcactatgacct)%7C(nt:aggtcactttgacct)%7C(nt:aggtcactgtgacct)%7C(nt:aggtcactctgacct)%7C(nt:aggtcacgatgacct)%7C(nt:aggtcacgttgacct)%7C(nt:aggtcacggtgacct)%7C(nt:aggtcacgctgacct)%7C(nt:aggtcaccatgacct)%7C(nt:aggtcaccttgacct)%7C(nt:aggtcaccgtgacct)%7C(nt:aggtcaccctgacct))?source=Rattus norvegicus (Norway rat)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.602 | 0.011 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]