LOCUS       XM_063266357            4901 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus PMS1 protein homolog 1 pseudogene
            (LOC108351648), mRNA.
ACCESSION   XM_063266357
VERSION     XM_063266357.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086026) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 9% of CDS bases
            internal stop codons :: corrected 2 genomic stop codon
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4901
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..4901
                     /gene="LOC108351648"
                     /note="PMS1 protein homolog 1 pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 long SRA read, 1 Protein"
                     /db_xref="GeneID:108351648"
                     /db_xref="RGD:11422529"
     CDS             1..558
                     /gene="LOC108351648"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 2 bases at 2
                     genomic stop codons"
                     /codon_start=1
                     /transl_except=(pos:439..441,aa:OTHER)
                     /transl_except=(pos:457..459,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: PMS1 protein homolog
                     1-like"
                     /protein_id="XP_063122427.1"
                     /db_xref="GeneID:108351648"
                     /db_xref="RGD:11422529"
                     /translation="

MDGQQSVCILITPYGELKNYGFDKMEIQDNGEGIEAVDVPVTALKYTLKINSHEDLKNLTTCGFPGEALGSICNAAEVVVTASAAAGDFSTQYVLDGTGHILSQNPSHLGQGTTVTALKNLLVRKQFYSTAKKCKDELKEMDRIFSXATAETXHKDYFVHTKAVIWQKSRVPDHRMALMWFWDLL"

     misc_feature    46..>435
                     /gene="LOC108351648"
                     /note="DNA mismatch repair protein MutL; Region: mutl;
                     TIGR00585"
                     /db_xref="CDD:273155"
     polyA_site      4901
                     /gene="LOC108351648"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

atggatggacagcagagcgtgtgcattctcatcactccgtacggagaactgaagaattatgggtttgataaaatggagattcaggacaatggtgagggcatcgaggctgtagatgtccctgtgacggcactgaagtacaccttgaagatcaacagtcatgaagaccttaaaaatctgacaacctgtggttttcctggtgaagccttggggtcgatatgcaatgctgcagaagtggtagttacagcaagtgcagctgctggtgactttagcacccagtatgttttagatggcactggccacatactttctcagaacccttcacatcttggtcaaggtacaactgtaactgctctaaagaatctacttgtaagaaaacaattttattcaacagcaaaaaagtgtaaagatgagctaaaagaaatggacaggatcttctcataagctacagctgaaacctgacataaggattattttgtacatactaaggcagttatttggcagaaaagtagagttccagaccacaggatggctctaatgtggttctgggatctgctgtaacaggcaatggaacctgtcgagcagactgtgaataagctcaggtatgaggaaaaggttgaaagacttggaacaatataataagcaaatgaagaaagctattggacaggaaacacaagtatcattaaatgacagtaggaaaaagataaaagtcactggtgtgtggggctggacatggagacataaagtgactcatctaaccagctgaaacttgacgagctctttcagtcccagaatgaaaatatgagtgaacatattaaaataacagagatccccttgtctatggaaaacttaaaagtgaactttaagaacaaaaagaagttgatttagaggagaaggatgagatttgcctgatccacattctcaagtttcctgatgcatggctggtcacatccagagcaaatgccatgctactgaacccgtacagagtggaggaagccctgctatttaaaagacttcttgagaatcataaattccttgcagaaccactggaaaagcctttttaatggacatcattatttagaggttttacataaaatgtcaaaagtttaggaaagacgcaatggatcagcttacctgtgtgaccctcgtcttccggaaaatggcttcaagatcaggttgacaccaggagtttccagtactgagaactccttggaaatagaaggcatagctaagtgtctcccattctatggaataatggacttaaaggaaattctttctggagctggggaccgaacccagggccgtgtgcttgctaggcaagtgctctaccactgagctaaatccccaaccaaggaaattcttaatgctatagtaaacaaagtgcaaaggagatttatgaatgtaggccttgaaaagtgataaattatctggagggagaagctgtccatctatccagacagctacccacatacttaccacaagaggatgtccaagatcttatctataggatgaagcaccagttcagaaaagaaattaaagggtgtgttcatggtggtccatttttttaatcattccatccatcttctaggaacttcatgattaagtttatgaccattagttactatggaaattgatgtggttcttaagccacttttgtactatcatgtatcaaagtgattatttttatactggaaaagattttttaaggttgtaaaatataaataatgtggactataaaaaaagcaagagtgacacttgggatgtatacatcatatttttcttggattaataaaaacacttcttcaaatatcaactctctgtggaaagaacagtgcatagagtcatcacttaaaaagttctggaagttgtacagcacaaacacgcgtgatatttactagcttccatgccctttctggagactgtgcagcacaaatacatgccaatgcttactaccttctaagccctcatctgaaacatcaccccctcagtaaaaaaagaaggcagctcacatatgaactgacataaatccttcccactgtttcgtaaccatagcacaaacccatgtgtcttataaagccttctaattcctttatttatttatcttttgatttatttatttatttatttatgtatttactttacatcttgatcacggattctcctccctcctctcctcccagtccctccctctcatttcccctcccccataccacccttcctttctcctcagagaaggggagatctcccatgaagatcaaccagccttggtatatcaagttataataaaattaggcacatcttctcctattgaggccacataaggcagccccataggagaaaaggggttcagagacaggcatcagagtcagagacagccccctgctccagttgttaaggatcccacatgaagaccaagatgcacatctattacatataggtaaggaggccaatgtctatcccatgcatgttcttggattggtgattcagtttctgtgagcccctgtggacccaggttagttgattctgtaggttttcctaaagtgtccttgggccttctgggaaattagagaaggggactagtgaagttgaaggtttaagttgggggtacagcagaatgaaggttgggtagtgcattaaccaaatctatggatgtataaaacagtctttagagacccagtagtttgtaggccaatttttaaaaacatttaaaatgggagtttgaacaaagctatcatcagtgggtggataaaggtttcacccagcagacataggctaataaatgaaaatctcaatgccaagcacgggatacttcctatgagttattgatcatggtatccccagccaacaaaacaacatattgctattcttggtttcctaccaaaactagataataaaaccatattgatgaaaatatttggtaataaggcatggaaaaatcaagttggaactgacctggaaatgtctctcctgttggctagatttcatagtactagaagatgctacgtgttcctctacagggcagcaaagtcttcagtggacctacccagtatatactctgcatgctacaaccttgacctgccaggcaagatgtatccacaggtagaatagtggcatggcattacagaggtacccaaccactttggatttgagccctgtccacagaaaattcatacttggtactataaaccccatcaaaactccatatctggaggggtctctggggcaagggatctcctaagaccccaagtgctaagtgaacatgccaaactgcctttaaaaatattgatgtgtataaccatacattagtgctggtatctccactttggtcacagaagcttcttttgcagtagcggtcaatggagaggcttataactggctaaagtcctgagactgttacatgctcatctctaaatgatacatctatgttttacagaggggctgggcttctcatctgtgatgttagcttctccacctccttttggaatcaaagcagctccctttgacagtagtgtgcaataggtacacaaacatttacttaataaagagataccttaaactaatcacctctttgctggctttacttcctcactaccaactgtgtaaaccccaacatgcttatctttatttactgaaattactttcttcatagcagtgtcatgtttttattctcagtctctacacacagctccaacactattgacaatatgactagactccacattagtagatgacctttaattttaagcctctacttaaattactatgaaattgaataaagaagagatgatctttagtattttaaatcagatagaacttaaatactgtgctctttctaaactttcccagatatgaactcaggaaagtctcatttgtgcaagaaaatacttctgcagaaaacaaaaaaaaatattttcaggcaagattaaagtgaaagcacaaaaccttgtccatcataggctgccacatgacttgcaagttggcaacagctggcagattaaataagcaggagtcactgggaaggctgactcatactttgagaattcttctatttactataccataccctaccctctgttagtttgacctcaactctacttcagtcaatagcagatatccaacaaattaaccatgagcaatataacaaatgcctagctagtactggagagatggctcagcagttaaaagcacttgttgctcttatagaggacccaggtttggttcccagaacccaagcgttggctcacaaccaaccatccatgacactgtgatccaatgctctcctctggcctccatagatactattgaacacatggtgtggtgcacatacgtgcaagcaaaacatttatacacataaaagaaatctttcatttctaactagttttaaaaatgcctagatgtgccaggaaggtttctctgttttgtttctgggggagtgtataaaagcctgtgactgcattgctgcctaaagctctctgaactgctcctcattctgaggggttaccctattaaatttaatttgtctaaagttttcctatcaattagaacagcattccactgagatagctttataacaataaaatagcttttgggtccttttgtaagtagaacattattaatagttaggaggtagtgttgatgaagttaaagcttttactactctctctaacccttgtgtcccttcatagcagctgggacagctgacacagaattggtgggctcagcattccagcagagatggcggtgataaggccccacctactcctcctcttcttcccacattacagtctcaatgcttgttattccaaatctgaaggtcatattttaatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgcccaaacaa

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