2024-04-20 18:54:41, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039110019 11988 bp mRNA linear ROD 11-JUN-2023 DEFINITION PREDICTED: Rattus norvegicus argonaute RISC catalytic component 3 (Ago3), transcript variant X3, mRNA. ACCESSION XM_039110019 VERSION XM_039110019.1 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051340.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_015227675.2-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..11988 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /db_xref="taxon:10116" /chromosome="5" /sex="male" /tissue_type="kidney" /country="USA: Wisconsin, Milwaukee, Medical College of Wisconsin" /collection_date="2019-03-08" /collected_by="Rebecca Schilling" gene 1..11988 /gene="Ago3" /gene_synonym="Eif2c3" /note="argonaute RISC catalytic component 3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 ESTs, 1 long SRA read, 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns" /db_xref="GeneID:313593" /db_xref="RGD:1309163" CDS 184..2064 /gene="Ago3" /gene_synonym="Eif2c3" /codon_start=1 /product="protein argonaute-3 isoform X1" /protein_id="XP_038965947.1" /db_xref="GeneID:313593" /db_xref="RGD:1309163" /translation="
MCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
misc_feature 184..525 /gene="Ago3" /gene_synonym="Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(319..321,364..366,406..408,418..420,472..474, 493..495,499..501) /gene="Ago3" /gene_synonym="Eif2c3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 658..1935 /gene="Ago3" /gene_synonym="Eif2c3" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1069..1071,1081..1083,1117..1128,1135..1137, 1159..1161,1168..1170,1180..1182,1192..1194) /gene="Ago3" /gene_synonym="Eif2c3" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1273..1275,1279..1281,1489..1491,1903..1905) /gene="Ago3" /gene_synonym="Eif2c3" /note="active site" /db_xref="CDD:240015" ORIGIN
ccagaaggatacgaccaccctcttggagggggcagggaagtatggtttggattccatcaatctgttcggcctgccatgtggaaaatgatgctcaatattgatgatgaataattagaagctcagaggactggaagtgaagtttctgccactgccttttacaaagcacagcctgtcattcagttcatgtgtgaagttcttgacattcacaacatcgatgagcaacccagacccctgaccgattctcatcgggtaaaattcactaaggagataaaaggtctgaaggttgaagtgactcattgtggaacaatgagacggaaataccgtgtctgtaatgtaacaagaaggcctgccagccaccaaacatttcctttacagctagaaaatggccaaactgtggagagaactgtagctcagtatttccgagaaaagtacacacttcagctgaagtacccacaccttccctgtctgcaagtggggcaggagcagaagcatacatacctgccactagaagtctgtaatattgtggctggacagaggtgtatcaagaaactaacagacaatcagacttctactatgattaaggcaacagcaagatctgcaccagatagacaagaggaaattagcagattggtaagaagtgcaaattatgaaacagatccatttgttcaggagtttcagtttaaagtgcgggatgagatggcccatgtgaccggtcgagtactgccagcacctatgctccagtatggaggacggaaccggacagtagcaacaccaagccacggagtatgggacatgagaggaaaacagttccacacaggagttgaaatcaaaatgtgggctatcgcttgctttgccacacagaggcagtgcagagaagaaatactgaaaggattcacagaccagcttcggaagatctccaaggatgcagggatgcccatccagggtcagccatgtttctgcaaatacgcacagggggcagacagcgtggagcccatgttccggcatctcaagaatacctactcaggactgcagctcattatcgtcatcctgcctgggaagacgccggtatatgcggaggtgaagcgtgtaggagacacacttttgggtatggccacacagtgtgtgcaagtcaagaatgtaataaaaacatctcctcaaactctttcaaacttgtgcctaaagatcaatgttaaacttggaggaatcaataatattcttgtacctcatcaaagaccttctgtgttccagcaaccagtgatcttcctgggcgcagatgtcacacacccgcctgctggtgacgggaagaagccttccattgctgctgttgtaggcagtatggatgcccatccaagcagatactgtgccacagtgagagttcagagaccccgacaggaaatcatccaggacttggcctccatggtccgggaactgctcatccaattttacaagtcaacccgattcaaacctactcggatcatcttttatcgggatggtgtttccgaaggacagtttagacaggtattatattatgagctcctggcaattcgagaagcctgtatcagtttggaaaaagactatcaacctggaataacctacattgtcgttcagaagagacatcatacgcgattgttctgtgctgatagaacagaaagggtgggaagaagcggcaacatcccagctggaaccacagtggatacagacatcactcacccgtatgaattcgacttttatctctgcagccatgctggaatacagggaaccagccgtccttctcactatcacgttctgtgggatgacaactgcttcactgcggatgaactgcagctgctgacctaccagctctgccacacctacgtgcgctgtaccaggtccgtgtcgatccctgcaccagcgtactatgctcacctggtggcgttcagagccaggtaccatctggtggacaaggagcatgacagtgctgaaggaagccatgtgtcaggacagagcaatggacgagatccacaagctcttgccaaggctgtccagattcaccaagataccttacgcacaatgtacttcgcttagcaagtccaagtgatctccgagaggaagagctggagctcgtatgtttccagtggactcagttcactggggaggcctccagccgcacagaagccaatactatgtaggggtctggaccttacgttgatccgaggaaaaatgtttactctgtcaaagaacacagcactgttgtataccagggagccagcccgctgcttttttgcagtgtcctgtagaagaagcatcacggttgttcgttctcacttcttacagtctaaccccattaatacctttacctcaagttgcttagcggcacaaccgtctctgcaaaaaaagtaaagaaaaagtaaatgatggtttaaaaacacacacttacacaaataatgattgctcacttacatgcaaaaaaaagcaatgtgcatctattcttgtaaaggagtgtgtattttcatcacccacacgttacttcatgtgcgtatgtatctagatcacggatatgtacctgtgtgtgttctatcattcattcccctggggaactgtctttccttgtgtccttcagcatctgttcttttgtccctgtagctacaaatgacattcgtatgttcatgcatatggctcgtttgaaggaaggcttggcaaactagacctctggttttatgtaccctcctcctagctcctgtctcacacccaggagtcctccactcccgacaccatgtttgtgagcgtctgctccttcctgctctggacttagccccatgcgcactgtgttcagcatagtggtgacccagggttcttcctgtagtgagtttgtaaagccactgcacatacgaaatcttgtcagacctttctgaccagagcaaatgttccaaagccttctgttgtatgagttatacctggaaatcccttcaagcttttataaagggaaagattttagaaatctgaaactctgtaggatggaaaaaggaaggaattggggttgtttttgttttgtttttgctagtttacttactgccctcaaaccttaatgtgatttcattcatatatatatgtatgtatgtatgtatacacataatatatgttgaagtatagctccctttgcctttatattcattagaatagtgctttaataattataaactgtattggctacactttttatagaactagaatcatatttaagaactgagacagtttttgctctcttttagtgcaataagcagttttacaggaaagtcgtgtctgtcgtcctcaccatggctagcaggaagaacagacatctgtcatttaaagggggcaaagtaatacagccttaatttcagaaggagagtttccttagtttcataaattcagttttaaagcaattccttaaaacagttgtagccaaaggagttaaacccattaaaggagcctcagataagagatcagagacgtagttgaacctccgtgtttaaaaataacagtgaacagcttaagatttaaatatttttaaattatctgaaaatatatcttacttgttgaactgtgcttctttgactaaaaggagtcaaatactggatggtttttttctatctttttaccagtgtaactttctctttaaaagtaagatggcaatgatgaaggaaattaatactttgatcatttaaaattagtaaatttctaaaatacagtgaaaactctttaaaaacttagttttcttcacttctttaatcagtaactttagtcactaactttaagctatcaaagcttagtttctccgtaacgtcaggttcgggaactctgcagtttgtaactcatgacaattgtgtgtgaatcttctctgttcttgtccccacaccggctctgcggacaagcactacagatgtttgtggtgggcgctgtcagcctctcagaactccatctgccatgagcaggcacgtatttaggtcttcgtttgctctcttactgttagtccacgtttatgccaatttactgtattttgaatctaaaatctgagcccatgtcctacaggcatgaattcttctgtccctttgccagaacactaaagaaagtactgtattttatatgttcgttgctttgaagtaactaaaatgcaattctcaatactgtttcaaagcactttacaaaggatatttatgtactttatacagtttttttccttccaaaatattcccatctcaaccctagcaaaagaaatctccttctaacatatttcgggttggtttgtttgcttgtttgctttggagacaaagtctctctctattgtccatgctggcccccaaccctgggctccagaagtattctcaacctccctggtagttaggaccactgcgctcctatcatcatgcctggctgttggggaacatggccaagagaatagaatgggatagcctccctatcaaaagtctgactggattgtgtttgcttagtataactagaacaccttctttggcccctgcacatgttcacgtgaggagctttggggagtggcatgggcaccctgttcctttcctgacctttgatctcacacatgccagagtgaaacccttactttagctcttatttgaaaggatttttttaaagaagaatttttttttctaaaataaggttctatcttttaaatggctccttttttagaatgcatttacattattgtcttgctagtttaagataattaactatacataaagactatgtatagtgtgtttctattttgcctactaataaattggtataccaagcaatgccaacaaagtttgtgcttaggattttaagataaaaaggcctatagaaatacttcttgaaatttatactatttttccatttctgggtagaactcctaatctctttcctaagttcctttcagtttaaacatcatgaagccatagtaatgtttctcttctgccgcattcttgctcccagctgatggatgttgtcggggtttgttttctttgtttgtttgtttttttataaaaggcatggcttagaagagtgactgaaacgtcaatctgagcaacttgtagaaattgattctcatgtgaagagttgcgagtttagtgtatattcttgatggcaaatgtgtgtgtagagtgtgcgtgttacatgtctgtattccggtatctaagccctggcactgagaccgtatattaataattctgtggctgctatatttattaatgcaggtctgacatttactgcactaaacagtaaggagataagcaagatgccaggctagtgtcagacactttttgtttctcagataagtctagggacataaaatatgaaggtaacaaataacaagtacttgaaacggtgctgattccagttcagtgacagaacgcctttgctttagaaacgtagttttcttttacattgatagtccacgtgagggcactaaagtcttctcggttctgggttctggcacatttccacagaaatatggaaaccttttgttttattaataattattttttaacacgttttccaggaaaaatagtctggaaatacatagtaaatgacctattagtttatttttgttcctaaagagaatctagaagggaccccagtaagaacgttctgtgtgtttgggaaggcatttggttgaagacactcctcaccttcaaaaaacccaaggacttgtccaagccaggccctctctggttcccatagcccagtagtgactttcacagtatcttgtggaacttagggtggcgagcttgatgtgtgtcttggaataagaaaccagctgctcttgagtaagaatagcttccagatctcagtaacaggcagcgtgagcacttggagagcagccatagaagcgaagcccagggagatgaatatcataacacgtggtggggcttttcacttgcttaattctcaagaaaatcaagggcctcgacactttgggcattgggagaatagttccctttctctttcaaaccttcatagtaatgtttctccaagaggtttaactgacctctctgcataattttcactggctgtcattaaactgagttctatgttcaattaagctgagtataaggtgcaaccccaaccctcaggagcatcaggaattcaaagccagcctcagcaacaggaggccatggctaaaacacagacgtcctgtgttcctcctccctaggcactcagcggttccgtgtagcttacccgtccctttcaagttgtgtgggttcctcaaagacggacaggatacataggaatactgtgtccccaactgccaaaccccctgctcccaaaaaaaagaaaaacaccagacaaatcagaaagagaatcgtctccaaaacatattggcaacattgaatgtgatgctgtgattaattagacccaggcgatagcgattagatagcgataaataaaatacatcgcgagagaaaaaggattataataacagcacattttatgtttctaattctccctgtaagtctgcaactttaaaatgaataaaggcttctgttgatattatccatggccagatgaaatttacctcacccctccaaaggagtgcctagagttttcttcagaatcttttgttctcaaagcacagaagttaacgacattagcttgaataaaaggatggtgaacctcagtgtggtgggttcaattcccggtagaagaccatgttaaagttataggtagcgaactgatgacaaattaggatcttctcgagtcacccagccagccagtgggcccccttccttgtttgaaatctatgtctaaggtcaccagaatctgctactgttttccattagagtctcagtaaagaggttttccaggtagacactgggttttaagtcgttttttaaagcaaagtggttcttagaaagtgccttttctgaagatggtgctgtagatttttacttttcaaacaacgtaaagctaaaaatttttatgataatttagaataccaagagtatgccagtttcatataaatagtgtcgtttgtcctgaatttggtcaggagaaccaagggacttgtgtgtagtaacatgtctctcagttaatgctcaccaaatcgattttgtaaatttgaaaatataatttttaattctcagttatgtttaaagtgtttataatatacataagataggagatatagtagtaagcaccccgtggcaaaggtaccatggcaggaactgtattatgaggagcttttccgttttcagcacgttacctcctgacctaacctttccttctgactcaacgttaaggacagtacatacaagggaagagctgcgtcactgagaccagttcaagagagcaagcaacatgagagctcagtccttagggaactgttgggttttagacagtaatgactattttacatgattcctgcttttttaggtcagaaggactgtagaaaatgacaggaagagggcatggtcaattatttttcaatagatcatagtctgaggatatataactactcactggaagggtacttagcgaatacaaagccccgatttcgcccctagccctagggaggaaaacgtgtaaatgtgggctgtgagaataagcaaagtgagaccatttaagcccactaggaactcagtcatctgttgggaagctagcagccttttcttacaactaaatggtcaattaaccaattcctcttgtgaatttagtgaccattcctccagacaataactatgctaaaaacacacagaaaccaccacccctcagtaaccttgtctgcagcgtaatgtaagaatgtcagtaaaattacactggttatctggggtgagctgtgtctgttcgcacattaaactttttcatttttataaggtcttaatagaaattattagcttatttttaagattaatttttctatagtgatgttcatatttattggcaattcgtgtgcaacttttgcattttgcccagatgttagatttaaggtattttatttttataaatatatctagcttttctctttctttgtgatattagcagaaattgagatagtgttaatatatcagccaaactactaattctatagagtttggatttttaccaataaaccgttaacccgattttctactttagaatatttagtactttatataatgggcattaaagacagtccctaggtgggtttctacatgtggataggagggagggcctctgtaagctaggttcattttcctcctccatttgatagcaaacaaacattaacaaattggctttattttacctgattccatcttggaggatgttgtcaaataaatgatctttggtttcttttgttagcttgaggcacattgctcaagattgtgattcatggggttggggatttagctcagtggtagagcgcttgcctagcaagcgcaaggccctgggttcggtcccaagctccaaaaaaaaaaaaaaaaaaaaaaagattgtgattcatttttatagtcgggaagacaaatagaaaaggatatacaagttattgataattgattcccaagtgagattttccttccataattatttggaagatttgctaccctgaactcccctagaagagtttcaaagttggttcaaccctgagtattggtgaagaaaaaagagtgtaggtgtctgggaagaacaaagacagaatgataaaagcatttcatctgattaaaattgacctcagaaggcccgaagtgcatggctttaatagcagtactcaagcagaggcaggctgacctctgcaaattccaggccagcctcggctacttagtgaggtccaggtcatccagggcctcatagtgagagcttatcaccaagtatacaaaagttaagtagtaacatgaactaattgaaaagcaataaaagtgtgattatagaatattaatttcaaggatataaaatcactgaagtttttttagtagttcaatctccctttatattggcacattaattcctttaagtatatgaaaaagatatattattccctaaagaagataaaatctgtccattatatttctacactcctactttgcttgctaaggaattcttctttcctgtgagaaatgaaaagagaaactctatcctttcttgaatttttaaatgtcaaatcgttggggctccatgcacttcacttccctcgctgtactcctttctccactgagaggggggaattgggaaggttttagggacttgcaaaccagaagatattttttagagtaagtaaaaaggcactgtgaaatgagtcagcgtgtgatcccatgtagacgttagctaagtcatttctctctgcattcttctagttacatcccttgctttctaacctaccttctgcgctcacgccctccttcacccgccaagtgctcactgaatgtcagtgcactgatcggacaagctcgttagccattcaggagagtctgtttcaagtagctcttttcttccccctgcaagtatagctaggtccccttaatcactgtatcttccattttattgtatgtctccattattctaggtagatgggcacatcactcttttacactaatgtgtttgacgctgtctgaaatccagtttcttttctgaaagcttttgggttcctgagcttccatgggaggctccacacacccagacacccaactggcctctgtgccacatcagcgatgaaattgcatctggcttgtttaagttcatagcgtacctcttcaggaccaagtatctgtgcagggaggtgtaggccataccttcaataacagtcctgtgagtaaaagagatgtgcacattgcccagaagacctccctgtatgttttactcttccgtgtgcacatctgtatcagaggctgtgtcagtggctgggagtgaagctcatgcagaagaagccttgcatggttgaagccctgagttcagtccctagtgcctcacaaactgggcttggcggtgtacattcctgtaaccaagcccagctttgattacgtactgagttggaggccatcctaggaaacttgtacctgctgcatcagacacttactaaggaaatcagtctgctacttcatgcccaaagttttcagcttcatgacttttgtttgggggtgagggggggacaagcaaaacttcctggacttggccatttgataatcttcagctcaaagaaggaatggttccaatctgttgtgtatgtgactctacctttattaaaggagggatttataaagacattgaccagtgaggctgtgagagcaggcaggaaagggaaatggggagatagattctttgctgggatcctagaaaccctggattagcattttctgtgttcacagttaaaggagcatttgttggctgtttagcacagctgtcaaggaaaggtttatcatggagatgtgtattagagccgtgcttccttgacagatttacatcttaaaagtcacctctgcattatagtgaggaggtcacatgaagttgttagccttaagtagaagcctggcagactgtagcgtactggtgggtctctccttagaaaaccccaatctgggccttgtcagacttgcctgtgcagactcggggggaaccctggtgggttaaaaagaaggaagaatcttggtgtaaagggttccacccggttactacatccagtttggtccccaggagttagtaagaggaagttttggttttcatagcggtacactagatctctggtgatgactcagtgcaaacacctctcctttcagtcagggaatgattccttgttggtgagatgagggccttgcaagcccacgtgtgtacttaagtataggctaggggtgtacttcaagtggtaaagcacacgctttgcaagcacaaacttgcaccgccccccccccccccccccccccatgaaacaaccacctagtagagcgagcaggaactccaggactcttttgtctgaaactttcccaggtgcctttttagcccagggcaccattttttcttttctttaaacaaaaaggtttccgggcagtttacagtcactctactgtgggtgaatatagtctttagaatagttggggaagaagggcgtttgccggacgttcctgctggatgagaagactatttttagccaggtacacacctttaatcaaaacacaccgggagtcagggcagtctctgactttgagaacagcctagtctacattacaagctccagaccaagaaaaaaagtttctgacttattttagtacatggcttcataagtatattttttttaaaaatcggttgaatggattaatacttagacaacttctagtttacatatttcttgctttcttaaactatctattcttcttacatatttaactaaagttgttatataaatatatttatcacatctgacttactggtatgtaaaaaaatattatacaaaaatccctttttagggccaagagagagatgttcaactgttaagagcacttactgttcggtcagaaccagaattcagttcccagcacccacattggcagctcactaatgccccaggggtgctagggtagggggggatagggtctgatgccccctcctggcctcagtgggcacatataaaagtaaaataacataaacgtatatgcaccaggcatgctggtcatacatttgagtttctggtcagcctgggcaatataagaccctgtcttctagaaaaataaaaaatgtgggactggagagatggctcagtggttaagagcactggttgctcttccagaggttctgagttcaattcctggtggctcacaaccatctgtaatggaatccgatgccctcttctggtgtgtctgaaaacaactgcataatactcatataaataaaataaatctttaaaaaaaaaatctctactcaggcctgaggtgtaaccaatgtggctttaaaagaacacaactgggggttggggatttagctcagtggtagagcgcttgcctagcaagcgcaaggccctgggttcggtccccagctccgaaaaaaagaaaagaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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