LOCUS       XM_039108542            1534 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus uncharacterized LOC120102195
            (LOC120102195), transcript variant X2, mRNA.
ACCESSION   XM_039108542
VERSION     XM_039108542.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1534
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /country="USA: Wisconsin, Milwaukee, Medical College of
                     Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1534
                     /gene="LOC120102195"
                     /note="uncharacterized LOC120102195; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 18 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:120102195"
                     /db_xref="RGD:41279385"
     CDS             591..1490
                     /gene="LOC120102195"
                     /codon_start=1
                     /product="uncharacterized protein LOC120102195 isoform X2"
                     /protein_id="XP_038964470.1"
                     /db_xref="GeneID:120102195"
                     /db_xref="RGD:41279385"
                     /translation="

MAECKRLNVYTDSRYAFATAHIHGKIYRRRGLLTSEGKDIKNKTEILAFLAALFLQKRLSIIHCPGHQKGHSPEARGNRLTDISAREAAMGTQVLSLKDQDQPTSPQPEQTSWLYTTEDTKLLQKMGAVWYPQLKRWVYTGKTVMPTKMTFELISYLHKLTHLGLKKMKTLLRQEEIDTYLLGRDQALREVTESCRACAQVNPGKAKIGQGVRPRGHWPGTHWEIDFTEIKPGMFGHKYLLVFIDTFSGWIEAFPTKHEMAKVVTKKLLEEIFPSTSSGPTNRAERHLETSSRGLPRQA"

     misc_feature    <591..857
                     /gene="LOC120102195"
                     /note="Ribonuclease H-like superfamily, including RNase H,
                     HI, HII, HIII, and RNase-like domain IV of spliceosomal
                     protein Prp8; Region: RNase_H_like; cl14782"
                     /db_xref="CDD:449355"
     misc_feature    933..1208
                     /gene="LOC120102195"
                     /note="His(2)-Cys(2) zinc finger; Region: zf-H2C2;
                     cl07828"
                     /db_xref="CDD:447530"
     misc_feature    1245..>1409
                     /gene="LOC120102195"
                     /note="Integrase core domain; Region: rve; pfam00665"
                     /db_xref="CDD:425808"
ORIGIN      

tgtatgctaagggggtcctaacacaaagactgggaccctggaagcgcctggtagcctacctgtctaagaaattagaccctgtggcctccggttggccaccatgcctgagaatggtggcagccattaccgtcctaaccaaagacgctgggaagttgaccttggggcagccactcaccatcctggcacctcatgcagtggaggctttgataaaacagccccctgaccactggctctctaattcccgcatgacccactaccaagccttgctactggatgcggaacgggtccagtttaggcccgtggtcgctctcaacccagccactctgcttcctttgccagaggaggcagaacagcacgactgtccgcagatccttgcagaagtacatggaaccagaccagacctatcggactgacctctccaggatgctgaccatacgtggtacaccgatggtagcagctacttggtgaacggggaacggaaagctggagccgcggtcactacggagtgcaaagtgatctgggcaagtgccttgccagctggtacctccgcacagtgggctgaactcattgccttaactcaggtgctcaaaatggcagaatgtaagaggctgaatgtatatacagacagccgctacgcctttgctacagcacacatccatggaaagatctaccggagaagagggctgctcacatctgagggcaaggacattaagaacaagactgaaattctggccttcctggcagctctgttcctacaaaaaagactgagcattatacattgcccagggcatcagaagggacacagccccgaggcacggggaaatcggctaactgacatctcagcgcgtgaggccgccatgggcacccaagttctgtccttaaaagaccaagatcaacccacgtctccacagccggaacagaccagttggctctacaccacggaggacacaaagctcctacagaaaatgggggccgtttggtacccacaactaaaacggtgggtctacacagggaaaacagttatgcctacgaagatgacctttgaattaatctcctacctacataaattaacacacctgggactcaagaagatgaagaccctcttaagacaagaagagattgacacctacctcctgggacgagatcaggccttgcgggaggtgactgaaagctgcagggcctgtgctcaggtaaacccaggaaaagctaaaattggacaaggagtccgtccccgaggacattggcctggtacccactgggaaattgacttcactgaaatcaagcctggtatgttcggacacaaatacctcttagtgttcatagataccttctccggatggatagaggctttccccacaaaacatgaaatggccaaggtggtgaccaagaagctcctcgaagaaatcttccccagcacatcttcaggccctacaaatcgtgcagagagacatctggaaacctctagccgcggcctaccaagacaggcttgaacaaccgatggtgccgcacccgttccagatcagagacactgtgt

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