LOCUS       XM_039098349            7645 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger protein 120-like
            (LOC102548076), transcript variant X2, mRNA.
ACCESSION   XM_039098349
VERSION     XM_039098349.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7645
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /country="USA: Wisconsin, Milwaukee, Medical College of
                     Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7645
                     /gene="LOC102548076"
                     /note="zinc finger protein 120-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3 long
                     SRA reads, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 14 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:102548076"
                     /db_xref="RGD:7716527"
     CDS             6199..6864
                     /gene="LOC102548076"
                     /codon_start=1
                     /product="zinc finger protein 431-like isoform X2"
                     /protein_id="XP_038954277.1"
                     /db_xref="GeneID:102548076"
                     /db_xref="RGD:7716527"
                     /translation="

MRMEFNAKDALTYDDVHVNFTREEWALLDPSQKSLYKDVMQETYRNLTAIGYNWEDHTIEEHCQSFRRHGRHERCHTGEKPSENTQCGKAFAQHSHLQRHKSTHTGEKLYECKPCDKAFTYDSQLQTLERIHTGEKPYKCNQCGKAFERRCNLGKHKLIHTGRKSYKCNQCGKAFARHSHLKTHGITHTGEKPYECDQCGKAFAYHSYLQVHKRIHTGVKP"

     misc_feature    6229..6351
                     /gene="LOC102548076"
                     /note="KRAB box; Region: KRAB; pfam01352"
                     /db_xref="CDD:426216"
     misc_feature    <6436..6849
                     /gene="LOC102548076"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    6451..6510
                     /gene="LOC102548076"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    6532..6594
                     /gene="LOC102548076"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    6616..6678
                     /gene="LOC102548076"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(6631..6633,6637..6639,6643..6645,6649..6654,
                     6661..6666,6673..6675,6715..6717,6721..6723,6733..6738,
                     6745..6750,6757..6759,6799..6801,6805..6807,6811..6813,
                     6817..6822,6829..6834,6841..6843)
                     /gene="LOC102548076"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    6700..6762
                     /gene="LOC102548076"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    6784..6846
                     /gene="LOC102548076"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      

aatgggatgctgtcttctgaagtgtctgaagaaaaccactgtgtactaacatataaataaaataaataaatcttaagaaaaaaaaaaacttaacttggaacctgaaactaaaagaaacttaagggtgacagcatacatggactgtaaaatctacctaggctagatcctcttttagcattttagacccagctaactggatctgtgctagtctttgctactttgtggtttctttttccccactcttaatccccctcctctgcccccctcccccccaacctcgtttcaccccctaataccagataagagagaaacaagcatggaggagaaaaagatccttgaatctagttccttgtactcgaaccagcagcatgagtcgaacagtctctgctgggggcagtgaatatgcaaagccaagagttagatttggggggactgctggttaatacaactgcctcaagtttgtttttcataatttttattccccacagtgccatagaatgcaaagctacaagttaacaaacaattctccaaaatacgtacagaacatagggatgaggttatgagaatcatcctttggcaatacttggttaaaatccttttacctttccactatcagcagtcacagtgaatggagtgattcagggaaattcagttccagagtccaaaaggagtttctgagatgcagaggtttctcaggtgtgcagggtggggtgtaggtaggcagggcagattctacatcattactaaaatccacatggcatcatgtagaagcagacattaagttattcttcaaccttcgtttgtgtgtgggtttggggggctgggtttgtgtgagatcacacggggcattgggagctgcagagccataaccctcctttcttaccacctccacatagagagctctagagcgtggggtcagtagtggccggagggtcagaaatatagcagtttaggggtcagtttgagttattcttgtgggagtttggacatctgtgttttttctatttgaatacacatgcaatcataggtaatattggtcaagttcacacatttcctggctgagtttcctcaggtcttttgattaaaacttgactataatttggggcttatgttcttgcctttttttctctacatctccttttttcacaaatgtgctaaaacttttgatcgttgtagctctttgataagtacagatggaatctatactgtgccaaaatgtgtactgtttcttcataatcctgttgatgattctgaggtttttttcacatgacaaatagctttgaaatcagctgtcctgttatatattattagacgttttctttaaattttgaattttgctgcaaattgaacatacccaacattccttttttaacatcactataatggtgttgtttacagttatataacttggtaaaagatattctacataataattcatttagcaagctatatagtatgtgtgcaaaactgaaactgatgtgaaataatgtacaaagccatagaaagaggaatttagtgtagactttagtgacacagaattcatccttaggctcacatagactagatctttataagtatgacttaattgagaaagcaaaaagagtgaaaataaagcatggtccagaattggacaatgaatctggatgtgacacaggcttgtgtcttagcagtaaactctgatagcagtaggttgggattttccatagatacctactaaaactagttaagactgtgtttctatagttgatataaaattgtgcatgtttaacatatgtattctgatacatgtgtacataatacctacactcaagcaatccccatcctatggagtgttgtattggaattgaggcccgtgcctagacagaccacacctggccagtatggttccacgggagagactttcattggtgctggggatgggggatgcacaaaggaggaaaagagaaagaaggggtgaaggtcaggaggggttggctttttatttgggtagggacataacttcttgcaaacaagggtgggagatggactaggaggacactggaaatatatgacaacagatgcacaggtccctttcacctctgggtgatgtcactgctatcgctgggtttggagacaacctgcaaccataaagccggttcctcataccaacactaacttctcataaaaatgacagaattgccatggatcccagcagtcttctcagtatagtttccatgcacttgaaattagttttaaaaagcaccagaatgctcatgtttcttgcagttgtattcatacttgcctaaatatgaaaataacatcaatgctcatttgttgaggaccagctaggtgcctctaggcaacctagggtgccttgggttaaaggagtggataaaggattatgcacttgtaaagactctcacagtcagtggtttattggtcataaaacagcatgtaattatagcttaagcattatcaacccatttctttctcccatataattttaacctttaatgcactcttattatcagatggatatgggagcttgaaccatgttgtcaacattgtaggtagcactcgaaaatgaagggtgaccaagtcaactcagtcagtcaacagggtctcaagggagggagtgaggattggaaggaaatagaaaattagacaatatatagcatgattctagccagtgctgaggctgaagcgggtttatttttcctagtctgcttttctaccatttttagtacaagcaaataataaggtcaattataggtcaaggaacaaacaaggcacaaagtcctgtgatcattgtttctaggggctcatcagtttgataagagaaaaggaatgttactagcccaaatgtaaatattcttacctgaacctacttcctaagtcatagtccatggtcaaattcccgtcaaattcgtatagaagggcagaaagcagagaatccagctgaaacaatctccttcaaaggtttttttttttttcctaatgtttatttagaacattatggggagaagagaaatgaaatatcaagttttctgtagcaagagttgttatagatgagaagcaaatgtgctattgtagtatgctataaaaatgcagaaagtggctttatttggatggcatgagagccctctgccaatgagtcatactgcatgaagaagtaaaaacgaggttaagaaacagattgaaggggtttgggatttagctcagtggtagagtgcttgcctagcaagcgcaaggccctgggttcggtccccagctctgaaaaaatgaaaagaaaaaaagaaccacattgattgttttgtttgaatttaaatactaacgataaattagagttgaacaaacatgtacaagtcttagataactgactcggctctttgttttctctgccttatgtaacttagatggtaacactttcatttttgctttggagaaagcgtttaaacatttaatatttttatacattggttcatttaggcttaatgcataatatagttaatgtagcgattttgtgcaacatctcatttatttctgtttgaatagttattgaaaaattagtttttcttaagaacaattatgagtattcttttggaatgaaatgaaaagcattgtaattccacactccaaactagtgaacgctaacacaagaaagtgattgcttttgtttcctgcgtgatatatatttcacattgctgagaacacaacttctgatttcacagatatagactggccccaagatgagtttgtcatgaactcctgtgttgcagagtatttgatggcattgtgaacccagagactgtccaatttgctggactcagggttggcggggggtggggggggctgtttctatctggtatggctcagcccttagtacacagctttgctctcaaacgatgaaggtaaacatcatttttgaaggaagtgctcatgatcgtaagtaatgtataattgagtgggtgaaaaaatgatgaatcagggaaagatctgacagaataggatatgcccaactctaaagagaagagggaaaagaggcaatataagaggaagcagcacagagggtaagaggaggaggcagttttacctggagaattttacagagacaggcaggctaaagacagaaaaagagaaaatgagtgagagaatgagaagagagcagtttactagagttggtttgaggccaagcacagcaattcagtcagaagtgaaagaagcaatttgaattggttagagtgaagagtaagagctagaagagcagagttgaccagccagagttcaaaaagaagaagaaagggtgattatttaacagttaagtctctgatgcccaaaacactcaagtgtccaactctactgagccccctcggtgtttgccccctgctgagccttgctgatgcatgtggaagctttagttcctaacaaaggaacatcttgatctttctgtttggcacctgggcagtaacacacagttcctgatttttgttcctgtttttgtcctgaggacataacctatttttccactgtgctttcgggagttctccacccagtgaacttggggtgtatattctgtgaacctcagtaaagctttggcattttcttagcaaaaatgacactagtctctgtcttttgttgaatcccccaggccattctagacctagataagattgtacagaagctataagcttcctaggcctagattatcagaaggaggaagtaagccttctaggtatttttacattcctatgtgatagtcactgtctacaaaaatagagcaagtactgtatgtatcacaatcttgctgtccctatctttatgattttgcttttctttgttcactatagcttcccttctttgcctttcatttaaacaatattgaattaagtttttatatgagggtagattctcatataatatatcctgaccactgtttccccaacctccactcccaactacccctcacttctatcctttccccaaggtccaccccccccacccatttcctcttcaaaaaggagcagacctaacagacaaaacaagatggaaaaagacaaggtgaaagccttcatgttggacaaggcaacctgataggaaaaatctcaagatcaagccaacgaatcagagttacacctgcttccactgttaggagtccctcaaagacaccaagctaacagccataacatatcagcagaggacctggtatagacccatgctgtctctatgcttgccatttaagtttctgtaagattcctagaaatccagtcagtgttagtcatgggttccctctcatgtcaaaggcctcaagttaaaccaaacattggttgttcactcaaacaaatttgttaccctcatgccccagcacatcttaggaaggaccaattgtaggtgtgtatgggtgttgggggtggaggggagtttccaggtttctctttcttccttttagcctgtagagtaccttctctcctcaaagagactagaacacaggggtgaaggttccgagcctgtactagcttgacctctgcattcagtgaactgtgtggaatttgtccttaatgatcagtctctgctgtcagttatctgagagcaaaatttgtccttgcatcagcaaggattgttgaaggatctcaagggaccgccttggccaacagctcaacaatatgtaacttattagcaacatcgaaaccctgcctggtgtcaaaggatggtcagttcagactccatatcctccattactaggagttttcattagtgtcacctggtcatccaggaagttgtcattgtactggatttctacactaactcccaaataacccctaattccagctgtttcttcctgcattttactttcccctgcatccccctcaactgatcctccctactcctgttcccatcaaactctggtctactcacagaaattattctatttcccctgtagaaagagatctgtgcttcctccctagagtccacctctttaactaacccctctgggtttgattactatttacctaataggcaatattcacttctaagtaaatgcatgtcatgtttgtcattctgggtgtgatttctttagttgcatttacttgcctgtaaattcatgatggcatctttttaaacagctgagtgatactccattttataaatgtaccacatgttttgtttaccctgtaaggtcaaagtgagtcttaactaccaggagattcccccaagtaaggcatgagaatggagtttaatgcaaaggatgcattgacctatgatgatgtacatgtgaacttcactcgagaagaatgggctttgctggatccttcacagaagagtctttacaaagatgtgatgcaggagacctataggaacctcactgctataggttacaattgggaagaccatactattgaagaacattgtcaaagtttcagaagacatggaaggcatgaaagatgtcatactggagagaagccctctgaaaatactcagtgtggtaaagcctttgcacaacatagtcatctccaaagacataagagcacacatactggagagaaactctatgaatgtaagccatgtgataaagcctttacatacgattctcagcttcaaactcttgaaaggattcatactggagaaaaaccctacaaatgtaatcaatgtggtaaagcttttgaacgtcgttgtaatcttggaaagcataaactaatacatactggaagaaaatcctacaaatgcaatcagtgtggtaaagcctttgcacgacacagtcatctcaaaacgcatggaataacacatactggagagaaaccttacgaatgtgatcaatgtggtaaagcctttgcatatcatagttatctccaagtacataaaagaatacatactggagtgaaaccttaagaatgtaagcaatgtggtaaagcctttgtaggtcagaatgaccttaaaaggcatgaaagaattcatactggagagaaaccttacgaatgtaatgaatgtggtaaagcctttgtatgtaatgctagtctccgaaaacataaagcaacacatactagagtgaaaccttatgattgtaagcaatttagtaagttctttgcctctcatgatcaactttgacaacatgaaagaattcatactggagagcaaccttacaaatgtagtcaatgtggtaaagccttttcacaatcaagccacctccaactacataaaagaacacatacatactaaagagtaaccctatgaatgtaaccaatgtagtaaagcctttactgtgatcttcaaaggtatggtggtttaaatatacttggcccatggcaagtggcagtgttaggaggtatggcctttttggagtagatgtggcctttgaggaagtatgtcactgtgggggtggggtgggctttgagtccccatgcttaaactctacccagggcagaagagtcttctggctgccttctgatcaagatgtagaactctcctccagcaccatgtctgcttggacactgacattccttccaccttgataatagactgaacctctgaatctgtatacctcccctccccccattaaatgtcctttctaagagttgccttggtcatggtatcttttcacagcattaaaacccaaattaacacaaacagcataaaagataccacattagagagaaactatgaatgtactaaa

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