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Previous release (v1)
2024-04-26 02:12:11, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039098348 2884 bp mRNA linear ROD 11-JUN-2023
DEFINITION PREDICTED: Rattus norvegicus zinc finger protein 120-like
(LOC102548076), transcript variant X1, mRNA.
ACCESSION XM_039098348
VERSION XM_039098348.1
DBLINK BioProject: PRJNA677964
KEYWORDS RefSeq.
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_051336.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Updated annotation
Annotation Name :: GCF_015227675.2-RS_2023_06
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.1
Annotation Method :: Best-placed RefSeq; Gnomon;
cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 06/06/2023
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..2884
/organism="Rattus norvegicus"
/mol_type="mRNA"
/strain="BN/NHsdMcwi"
/db_xref="taxon:10116"
/chromosome="1"
/sex="male"
/tissue_type="kidney"
/country="USA: Wisconsin, Milwaukee, Medical College of
Wisconsin"
/collection_date="2019-03-08"
/collected_by="Rebecca Schilling"
gene 1..2884
/gene="LOC102548076"
/note="zinc finger protein 120-like; Derived by automated
computational analysis using gene prediction method:
Gnomon. Supporting evidence includes similarity to: 14
long SRA reads, 14 Proteins, and 89% coverage of the
annotated genomic feature by RNAseq alignments, including
58 samples with support for all annotated introns"
/db_xref="GeneID:102548076"
/db_xref="RGD:7716527"
CDS 283..2103
/gene="LOC102548076"
/codon_start=1
/product="zinc finger protein 431-like isoform X1"
/protein_id="XP_038954276.1"
/db_xref="GeneID:102548076"
/db_xref="RGD:7716527"
/translation="
MDALTYDDVHVNFTREEWALLDPSQKSLYKDVMQETYRNLTAIGYNWEDHTIEEHCQSFRRHGRHERCHTGEKPSENTQCGKAFAQHSHLQRHKSTHTGEKLYECKPCDKAFTYDSQLQTLERIHTGEKPYKCNQCGKAFERRCNLGKHKLIHTGRKSYKCNQCGKAFARHSHLKTHGITHTGEKPYECDQCGKAFAYHSYLQVHKRIHTGEKPYECNQCGKAFVGQNDLKRHERIHTGEKPYKCNECDKGFGHHQNFRMHKMMHAGEKPYKCNQCGKAFSQNSHLQTHKSTHTGEKPYKCDQCGKAFTSHSYLQVHKRIHTGEKLCECEQCGKAFTSHSYLQVHKRIHTGENLYECNQCGKTFASHSYLQVHKRIHTGEKLYECNQCGKAFASHSYLQVHKRIHTGEKLYECDQCGKAFASHSHLQVHKRIHTGEKPYVCDQCGKDFVVQSDLKRHKRTHTGEKPYKCNECGKAFVGQNDLKKHKRKHTGEKPYKCNECGKAFVWNGSLRTHKVIHSGEKPYKCNECGKAFACNSSLRTHKAIHTGVKPFKCKHCGKAFVGQNYLKKHERIHTGEKLYKCNECGKAFVFDSSLRKHKAVHTGVKP"
misc_feature 292..414
/gene="LOC102548076"
/note="KRAB box; Region: KRAB; pfam01352"
/db_xref="CDD:426216"
misc_feature <472..981
/gene="LOC102548076"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 514..573
/gene="LOC102548076"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 595..657
/gene="LOC102548076"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(595..597,604..606,643..645,655..657)
/gene="LOC102548076"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature 679..741
/gene="LOC102548076"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(679..681,688..690,727..729,739..741)
/gene="LOC102548076"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature 751..2079
/gene="LOC102548076"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 763..825
/gene="LOC102548076"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(763..765,772..774,811..813,823..825)
/gene="LOC102548076"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(778..780,784..786,790..792,796..801,808..813,
820..822,862..864,868..870,880..885,892..897,904..906,
946..948,952..954,958..960,964..969,976..981,988..990)
/gene="LOC102548076"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 847..909
/gene="LOC102548076"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 931..993
/gene="LOC102548076"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1015..1077
/gene="LOC102548076"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1015..1017,1024..1026,1063..1065,1075..1077)
/gene="LOC102548076"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature 1099..1161
/gene="LOC102548076"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1099..1101,1108..1110,1147..1149,1159..1161)
/gene="LOC102548076"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(1114..1116,1120..1122,1126..1128,1132..1137,
1144..1149,1156..1158,1198..1200,1204..1206,1216..1221,
1228..1233,1240..1242,1282..1284,1288..1290,1294..1296,
1300..1305,1312..1317,1324..1326)
/gene="LOC102548076"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 1183..1245
/gene="LOC102548076"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1267..1329
/gene="LOC102548076"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1351..1413
/gene="LOC102548076"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1351..1353,1360..1362,1399..1401,1411..1413)
/gene="LOC102548076"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(1366..1368,1372..1374,1378..1380,1384..1389,
1396..1401,1408..1410,1450..1452,1456..1458,1468..1473,
1480..1485,1492..1494,1534..1536,1540..1542,1546..1548,
1552..1557,1564..1569,1576..1578)
/gene="LOC102548076"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 1435..1497
/gene="LOC102548076"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1519..1581
/gene="LOC102548076"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1603..1665
/gene="LOC102548076"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1687..1749
/gene="LOC102548076"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1771..1833
/gene="LOC102548076"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1855..1917
/gene="LOC102548076"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1939..2001
/gene="LOC102548076"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2023..2085
/gene="LOC102548076"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
ORIGIN
ggaggacaggcacaagtgctcctgaaatgcaaatccctgtagatctggaaatgttctggccctgggcttgaagcttaggctgagagctaagtcactcaagactactggccaatcagagtcttcactggacgtgccaatcagaatagaaggcgggcatttccgggtgccttgttgcaggattcgcttagttttcaagccttcttaaatggtcctggttgctatgctctgtgtccctcggttggattctgtgaggcatgctcaggcaagctccaaagttgcgacatggatgcattgacctatgatgatgtacatgtgaacttcactcgagaagaatgggctttgctggatccttcacagaagagtctttacaaagatgtgatgcaggagacctataggaacctcactgctataggttacaattgggaagaccatactattgaagaacattgtcaaagtttcagaagacatggaaggcatgaaagatgtcatactggagagaagccctctgaaaatactcagtgtggtaaagcctttgcacaacatagtcatctccaaagacataagagcacacatactggagagaaactctatgaatgtaagccatgtgataaagcctttacatacgattctcagcttcaaactcttgaaaggattcatactggagaaaaaccctacaaatgtaatcaatgtggtaaagcttttgaacgtcgttgtaatcttggaaagcataaactaatacatactggaagaaaatcctacaaatgcaatcagtgtggtaaagcctttgcacgacacagtcatctcaaaacgcatggaataacacatactggagagaaaccttacgaatgtgatcaatgtggtaaagcctttgcatatcatagttatctccaagtacataaaagaatacatactggagagaagccctatgaatgtaatcaatgtggtaaagcctttgtaggtcagaatgatcttaaaaggcatgaaagaattcatactggagagaaaccctacaaatgtaatgaatgtgataaaggctttggacatcaccaaaattttcgaatgcataaaatgatgcatgctggagaaaaaccctacaaatgcaatcaatgtggtaaagccttttcacaaaacagtcatctccaaacacataaaagcacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagctctgtgaatgtgagcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaatctctatgaatgtaatcaatgtggtaaaacctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaagctctatgaatgtaatcaatgtggtaaagcctttgcatctcatagttatctccaagttcataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgcatctcatagtcatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagactttgtagttcagagtgatcttaaaagacataaaagaacacatactggtgagaaaccttacaaatgtaatgaatgtggtaaggcctttgtaggtcagaatgatcttaaaaaacataaaagaaaacatactggagagaaaccttacaaatgtaatgaatgtggtaaagcctttgtatggaatggtagtctccgaacacataaagtaatacatagtggagagaaaccttacaaatgtaatgaatgtggtaaagcctttgcatgtaacagtagtctccgaacacataaagcaatacatactggagtgaaacctttcaaatgtaagcactgtggtaaagcctttgtaggtcagaattaccttaaaaagcatgaaagaattcatactggagagaaactttacaaatgtaatgaatgtggtaaagcctttgtatttgattctagtctccgaaaacataaagcagtacatactggagtgaaaccttaagaatgtaagcaatgtggtaaagcctttgtaggtcagaatgaccttaaaaggcatgaaagaattcatactggagagaaaccttacgaatgtaatgaatgtggtaaagcctttgtatgtaatgctagtctccgaaaacataaagcaacacatactagagtgaaaccttatgattgtaagcaatttagtaagttctttgcctctcatgatcaactttgacaacatgaaagaattcatactggagagcaaccttacaaatgtagtcaatgtggtaaagccttttcacaatcaagccacctccaactacataaaagaacacatacatactaaagagtaaccctatgaatgtaaccaatgtagtaaagcctttactgtgatcttcaaaggtatggtggtttaaatatacttggcccatggcaagtggcagtgttaggaggtatggcctttttggagtagatgtggcctttgaggaagtatgtcactgtgggggtggggtgggctttgagtccccatgcttaaactctacccagggcagaagagtcttctggctgccttctgatcaagatgtagaactctcctccagcaccatgtctgcttggacactgacattccttccaccttgataatagactgaacctctgaatctgtatacctcccctccccccattaaatgtcctttctaagagttgccttggtcatggtatcttttcacagcattaaaacccaaattaacacaaacagcataaaagataccacattagagagaaactatgaatgtactaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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