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Previous release (v1)
2024-04-20 05:54:11, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039098347 4961 bp mRNA linear ROD 11-JUN-2023
DEFINITION PREDICTED: Rattus norvegicus zinc finger protein 729-like
(LOC102556098), mRNA.
ACCESSION XM_039098347
VERSION XM_039098347.1
DBLINK BioProject: PRJNA677964
KEYWORDS RefSeq.
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_051336.1) annotated using gene prediction method: Gnomon,
supported by EST evidence.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Updated annotation
Annotation Name :: GCF_015227675.2-RS_2023_06
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.1
Annotation Method :: Best-placed RefSeq; Gnomon;
cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 06/06/2023
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..4961
/organism="Rattus norvegicus"
/mol_type="mRNA"
/strain="BN/NHsdMcwi"
/db_xref="taxon:10116"
/chromosome="1"
/sex="male"
/tissue_type="kidney"
/country="USA: Wisconsin, Milwaukee, Medical College of
Wisconsin"
/collection_date="2019-03-08"
/collected_by="Rebecca Schilling"
gene 1..4961
/gene="LOC102556098"
/note="zinc finger protein 729-like; Derived by automated
computational analysis using gene prediction method:
Gnomon. Supporting evidence includes similarity to: 1 EST,
2 long SRA reads, 10 Proteins, and 100% coverage of the
annotated genomic feature by RNAseq alignments, including
3 samples with support for all annotated introns"
/db_xref="GeneID:102556098"
/db_xref="RGD:7732163"
CDS 2372..4276
/gene="LOC102556098"
/codon_start=1
/product="zinc finger protein 431-like"
/protein_id="XP_038954275.1"
/db_xref="GeneID:102556098"
/db_xref="RGD:7732163"
/translation="
MDALTYDDVHVNFTREEWALLDPSQKSLYKDVMQETYRNLTAIGYNWEDHSFEEHCQSFRRYGRHERCHTGEKPSENTQCGKAFAQHSHLQRHKSTHTGEKLYECKPRDKAFTYDSQLQTLERIHSGEKPYKCNQCGKTFERRCNLGRHKLIHTGRKSYKCNQCGKAFARHSHLKLHGITHTGEKPYECDQCGKAFASHSYLQVHKTIHTGEKPYVCDQCGKAFAHSRPLRRHKIMHTRKKTYKCNQGGKAFARHSHLKTHGVTHTGEKPYKCDQCGKAFASHRYLQVHKRIHTGEKPYECDQCGKAFASHSHLQVHRITHTGEKPYKCDQCGKAFAYHSYLQVHKRIHTGEKPYVCDQCGKAFAHLRHLQVHGITHTGEKPYKCDQCGKAFTSHSYLQVHKRIHTGEKPYVCDQCGKAFAQLSHLQVHGITHTGEKPYKCDQCGKAFSSHSYLQVHKRIHTGEKFYECDQCGKAFASHSHLQVHKRIHTGEKPYVCDQCGKDFVVQRDLKRHKRTHTGEKPYKCNECGKAFVWNGSLRAHKVIHTGEKPYKCNECGKAFACNTSLRTHKAIHTGVKPFKCKQCGKAFVGQNYLKKHERIHTGEKLYECNECGKAFVFDASLRKHKAVHTGVKP"
misc_feature 2381..2503
/gene="LOC102556098"
/note="KRAB box; Region: KRAB; pfam01352"
/db_xref="CDD:426216"
misc_feature <2561..3046
/gene="LOC102556098"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 2603..2746
/gene="LOC102556098"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2768..2830
/gene="LOC102556098"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(2768..2770,2777..2779,2816..2818,2828..2830)
/gene="LOC102556098"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature 2840..3970
/gene="LOC102556098"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 2852..2914
/gene="LOC102556098"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(2852..2854,2861..2863,2900..2902,2912..2914)
/gene="LOC102556098"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(2867..2869,2873..2875,2879..2881,2885..2890,
2897..2902,2909..2911,2951..2953,2957..2959,2969..2974,
2981..2986,2993..2995,3035..3037,3041..3043,3047..3049,
3053..3058,3065..3070,3077..3079)
/gene="LOC102556098"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 2936..2998
/gene="LOC102556098"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 3020..3082
/gene="LOC102556098"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 3104..3166
/gene="LOC102556098"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(3104..3106,3113..3115,3152..3154,3164..3166)
/gene="LOC102556098"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature 3188..3250
/gene="LOC102556098"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(3188..3190,3197..3199,3236..3238,3248..3250)
/gene="LOC102556098"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(3203..3205,3209..3211,3215..3217,3221..3226,
3233..3238,3245..3247,3287..3289,3293..3295,3305..3310,
3317..3322,3329..3331,3371..3373,3377..3379,3383..3385,
3389..3394,3401..3406,3413..3415)
/gene="LOC102556098"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 3272..3334
/gene="LOC102556098"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 3356..3418
/gene="LOC102556098"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 3440..3502
/gene="LOC102556098"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 3524..3586
/gene="LOC102556098"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(3524..3526,3533..3535,3572..3574,3584..3586)
/gene="LOC102556098"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(3539..3541,3545..3547,3551..3553,3557..3562,
3569..3574,3581..3583,3623..3625,3629..3631,3641..3646,
3653..3658,3665..3667,3707..3709,3713..3715,3719..3721,
3725..3730,3737..3742,3749..3751)
/gene="LOC102556098"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 3608..3670
/gene="LOC102556098"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 3692..3754
/gene="LOC102556098"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 3776..3838
/gene="LOC102556098"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 3860..3922
/gene="LOC102556098"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 3944..4006
/gene="LOC102556098"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 3980..4057
/gene="LOC102556098"
/note="Zinc-finger double domain; Region: zf-H2C2_2;
pfam13465"
/db_xref="CDD:433230"
misc_feature 4028..4090
/gene="LOC102556098"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 4064..4138
/gene="LOC102556098"
/note="Zinc-finger double domain; Region: zf-H2C2_2;
pfam13465"
/db_xref="CDD:433230"
misc_feature 4112..4174
/gene="LOC102556098"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 4196..4258
/gene="LOC102556098"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
ORIGIN
tttatctttttcatagtgatttgcatatttgctgtcttgatttatgcatttaaattttccatattctttattatcttccacactactttttcttaattttaagttgtgtttgataagttagagaattttattttcatttatatgtataagtattttgcctttatgtatgtttgagcaccatgttcctggtgtcttccgtggaggtcagaagaggaaatcagattttctggaactggagtaggacatggttgtgagttcctatcccacacctggaattaaaacaataacatgttcacttaccgtaattgggttttttaacaaacccaaactcttattaaaactaccagtagttgcacttccagaaaatctgatgccctatactgaccttcaaaggtcataaataatattatataaagaggtttgtataactttttaaagtgatgtattgtgcctgtgactgtgctgtgtatggatgccctataggccagaagtatacgatcttctagaactggatttagggtacttgtggactacctgacctgtatcccaagaaccaaatgcaggtcctcttcagaaatcatagacattgtggactccaagctcctcagcctggacccagtgagttttgaagtgtctgttgtatcatcaactcctcttgaacctgattttcttggtgtgttggttcacagtgaatgctgagatcaggggagaggaaggctgtccttttcaatgaatagttcttactgtctgtgagcctttgtttgcagttgatccctgtcaacatgatctgactcacagtttgcatctactgctttataaggtatttcattgtcttcccaagcattcaatgtgctagactaggttgtctgacatttttttttactttttattatatttattaattcgtgactgtgacaactaccccattttccaagaaagttttctcttgatactgctacagtgtgctgcagtatcatggtaaggggctgtaagtggcatgaaacataaggaccacaatttttaactgcaagccatgatggtgtgtaatgattaaatgaaaatatttgttatggatggtcagatgaagattccaaaatatcatatctaaggtattttcaattgtttctcctgtcttcttgcagtatttgtggctataaacattgtcttgtgcatgattttaaatgtcccatttttaattcctcattgcaattttggttccagtcatatcatgaatggagtgatcatggagcaggacaagctggcctgctcctgtattgatgagaacttcacaactaactataagatgttggccaccctggttgaagggaactttttagaggtctaactggatttccatgtccccacactgatctgtgtggctgtaaacattttccaaaacgtcaagatatatgtcttgcttttctgcaggaaaatcagcaatgtgaaatcacttgaccatcctaactttatcaagctgtttcacatggtcagacaagagaaaacacctaccagttgaaggataatgccttggatggagagacactagaacaagtcattgaaggtgggggtctttagaggaaagtctctatgcaaagttcaaaggatgtttgctgagatagtacatgctgtgcagtactgccatgaccatcacattttccacagagacataaagaccagcaagctgttaatcgacagcagtaggaacgccaagctgtgtgattttggcctgggcagaagctagcagatttctgggacacacttccttacagtgccccagaattttagcaagcacaggaacatgagagctgccctgtggatatctggagtttaggggtcctcctgttcttcaaggtggccaggatctcacctttctgaggcaagtattttgcaggtgtgaaactgcagattatcaagcaccacaaactttagcattcctttttatgtttccatttattttttaaggtcatcattgaactattgattgtcaattccagaagaaatcccaccatccacaaaatcatgatgtgcctcatgattagtgaaagtgaggcatgtttattacctccttcctgtgtatttctgctttgaagttttgaagaggaccagaagccaggcagtaggaatgtacaggctcttttaacaatttgatgctcactctaacccttacggaggtgctcaagtctctcaagactactggccaatcagagttttcactggacgtgccaatcagaagagaaggcgggcatttccgggtgccttgttgcaggattcgcttagtcgccaagccttcttaaatggtcctgcctgctgtgctctgtgtcccgcggttggattctgtgaggcatgctcaggcaagctccaaagttgcgacatggacgcattgacctatgatgatgtacatgtgaacttcactcgagaagaatgggctttgctggatccttcacagaagagtctctacaaagatgtgatgcaggagacctacaggaacctcactgctataggttacaattgggaagaccatagttttgaagaacattgtcaaagtttcagaagatatggaaggcatgaaagatgtcatactggagagaaaccatctgaaaatactcagtgtggtaaagcctttgcacaacatagtcatctccaaagacataagagcacacatactggagagaaactctatgaatgtaagccacgtgataaagcctttacatacgattctcagcttcaaactcttgaaaggattcatagtggagaaaaaccctacaaatgtaatcaatgtggtaaaacctttgaacgccgttgtaatcttggaaggcataaactaatacatactggaagaaaatcctacaaatgcaatcagtgtggtaaagcctttgcacgacacagtcatctcaaactgcatggaataacacatactggagagaaaccttacgaatgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagtacataaaacaatacatactggagagaagccctatgtgtgtgatcaatgtggtaaagcctttgcacatagtcgtcctcttagaaggcataaaataatgcatactaggaaaaaaacctacaaatgcaatcagggtggtaaagcctttgcacgacacagccatctcaaaacgcatggagtaacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagcctttgcatctcataggtatctccaagtacataaaagaatacatactggagagaagccctatgaatgtgatcaatgtggtaaagcctttgcatctcatagtcatctccaagttcatagaataacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagcctttgcatatcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgaccaatgtggtaaagcctttgcacatctccgtcatctccaagttcatggaataacacatactggagagaaaccttacaagtgtgatcagtgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgaccaatgtggtaaagcctttgcacaactcagtcatctccaagttcatggaataacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagccttttcatctcatagttatctccaagtacataaaagaatacatactggagagaagttctatgaatgtgatcaatgtggtaaagcctttgcatctcatagtcatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagactttgtagttcagagggatcttaaaagacataaaagaacacatactggcgagaaaccttacaaatgtaatgaatgtggtaaagcctttgtatggaatggtagtctccgagcacataaagtaatacatactggagagaaaccttacaaatgtaatgaatgtggtaaagcctttgcatgtaacactagtctccgaacacataaagcaatacatactggagtgaaacctttcaaatgtaagcagtgtggtaaagcctttgtaggtcagaattaccttaaaaagcatgaaagaattcatactggagagaaactttatgaatgtaatgaatgtggtaaagcttttgtatttgatgctagtctccgaaaacataaagcagtacatactggagtgaaaccttaagaatgtaagcaatgtggtaaagcctttgtaggtcagaatgaccttaaaaggcatgaaagaattcatactggagagaaaccttacaaatggaatgaatgaattaaagcctttgtatgtaatgctagtctccgaaaacataaagcaacacatactagagtgaaaccttatgattgtaagcaatttagtaagttctttgcctctcatgatcaactttgacaacatgaaagaattcatactggagagcaaccttacaaatgtagtcaatgtggtaaagccttttcacaatcaagccacctccaactacataaaagaacacatacatactaaagagtaaccctatgaatgtaaccaatgtagtaaagcctttactgtgatcttcaaaggtatggtggtttaaatatacttggcccatggcaagtggcagtgttaggaggtatggcctttttggagtagatgtggcctttgaggatgtaagtcactgtgggggagggtgggctttgagtccccatgcttaaactctgcccagggcagaagagtcttctggctgccttctgatcaagatgtagaactctctcctccagcaccatgtctgcttggacactgacattccttccaccttgataatagactgaacctctgaatctgtatacctcccctccccccaattaaatgtcctttataagaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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