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Previous release (v1)
2024-04-20 18:22:14, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039098328 2165 bp mRNA linear ROD 11-JUN-2023
DEFINITION PREDICTED: Rattus norvegicus zinc finger protein 431-like
(LOC103690914), transcript variant X1, mRNA.
ACCESSION XM_039098328
VERSION XM_039098328.1
DBLINK BioProject: PRJNA677964
KEYWORDS RefSeq.
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_051336.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Updated annotation
Annotation Name :: GCF_015227675.2-RS_2023_06
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.1
Annotation Method :: Best-placed RefSeq; Gnomon;
cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 06/06/2023
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..2165
/organism="Rattus norvegicus"
/mol_type="mRNA"
/strain="BN/NHsdMcwi"
/db_xref="taxon:10116"
/chromosome="1"
/sex="male"
/tissue_type="kidney"
/country="USA: Wisconsin, Milwaukee, Medical College of
Wisconsin"
/collection_date="2019-03-08"
/collected_by="Rebecca Schilling"
gene 1..2165
/gene="LOC103690914"
/note="zinc finger protein 431-like; Derived by automated
computational analysis using gene prediction method:
Gnomon. Supporting evidence includes similarity to: 1 long
SRA read, 5 Proteins, and 72% coverage of the annotated
genomic feature by RNAseq alignments, including 41 samples
with support for all annotated introns"
/db_xref="GeneID:103690914"
/db_xref="RGD:9213653"
CDS 355..2028
/gene="LOC103690914"
/codon_start=1
/product="zinc finger protein 431-like isoform X1"
/protein_id="XP_038954256.1"
/db_xref="GeneID:103690914"
/db_xref="RGD:9213653"
/translation="
MRMEFNAKDALTYDDVHVNFTREEWALLDPSQKSLYKDVMQETYRNLTAIGYNWEDHSIEEHCQSFRRHGRHERCHTGEKPSENTQCGKAFAQHSRLQRHKNTHTGEKLCECKPHDKAFTYDSQLQTLERIHSGEKPYKYNQCGKAFERRCNLGRHKLIHTGRKSYKCNQCGKAFSQNSHLQTHKSTHTREELYKCKQCGKAFTCHNELQSHKRIHTGEKSYECNQCGKAFKSHRYLQVHKAIHTGEKPYVCDQCGKAFARLSHLKTHGITHSGKKPCKCDQCGKAFASHSYLQVHKRIHTGEKPYVCDRCGKAFASHSYLQVHKRIHTGEKPYVCDWCGKAFASHSYLQVHKRIHTGEKPYVCDRCDKAFAYHSYLQVHKRIHTGEKLYECDQCGKAFASHSYLQVHKKIHTGEKPYVCDQCGKDFVVQSDLKRHKRTHTGEKPYKCNECGKAFVGQNDLKKHKRKHTGEKPYEYNECGKAFVGQNSLKRHERIHTGEKPYECNECGKAFVGQSNLKGHERIHGGEKPYECNECGKGFVCNDRLQTHKAIHTGVKP"
misc_feature 385..507
/gene="LOC103690914"
/note="KRAB box; Region: KRAB; pfam01352"
/db_xref="CDD:426216"
misc_feature 592..1830
/gene="LOC103690914"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 604..657
/gene="LOC103690914"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 700..750
/gene="LOC103690914"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 775..834
/gene="LOC103690914"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 856..918
/gene="LOC103690914"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(856..858,865..867,904..906,916..918)
/gene="LOC103690914"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature 940..1002
/gene="LOC103690914"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(940..942,949..951,988..990,1000..1002)
/gene="LOC103690914"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(955..957,961..963,967..969,973..978,985..990,
997..999,1039..1041,1045..1047,1057..1062,1069..1074,
1081..1083,1123..1125,1129..1131,1135..1137,1141..1146,
1153..1158,1165..1167)
/gene="LOC103690914"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 1024..1086
/gene="LOC103690914"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1108..1170
/gene="LOC103690914"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1192..1254
/gene="LOC103690914"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1192..1194,1201..1203,1240..1242,1252..1254)
/gene="LOC103690914"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(1207..1209,1213..1215,1219..1221,1225..1230,
1237..1242,1249..1251,1291..1293,1297..1299,1309..1314,
1321..1326,1333..1335,1375..1377,1381..1383,1387..1389,
1393..1398,1405..1410,1417..1419)
/gene="LOC103690914"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 1276..1338
/gene="LOC103690914"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1360..1422
/gene="LOC103690914"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1444..1506
/gene="LOC103690914"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1528..1590
/gene="LOC103690914"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1528..1530,1537..1539,1576..1578,1588..1590)
/gene="LOC103690914"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature 1612..1674
/gene="LOC103690914"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1696..1758
/gene="LOC103690914"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1696..1698,1705..1707,1744..1746,1756..1758)
/gene="LOC103690914"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(1711..1713,1717..1719,1723..1725,1729..1734,
1741..1746,1753..1755,1795..1797,1801..1803,1813..1818,
1825..1830,1837..1839,1879..1881,1885..1887,1891..1893,
1897..1902,1909..1914,1921..1923)
/gene="LOC103690914"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 1780..1842
/gene="LOC103690914"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1816..1890
/gene="LOC103690914"
/note="Zinc-finger double domain; Region: zf-H2C2_2;
pfam13465"
/db_xref="CDD:433230"
misc_feature 1864..1926
/gene="LOC103690914"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1948..2010
/gene="LOC103690914"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
ORIGIN
caactgatcctacctactcctgttcccatcaaactctggtctactcacagaaattattctatttcccctgtagaaagagatctgtgcttcctgcctagagcctacctctttaactaacccctctgggttggattattatttacctaataggtaatatccacttgtaagtaaatgcatgccatgtttgtcattctgggtgtgatttctttagttgcatttacttgcctgtaaattcatgatggcatctttttaaacagctgagtgatactccattttataaatgtaccacatgttttgtttaccctgtaaggtcaaagttagtcttaactaccaggagattcccccaagtaaggcatgagaatggagtttaatgcaaaggatgcattgacctatgatgatgtacatgtgaacttcactcgagaagaatgggctttgctggatccttcacagaagagtctctacaaagatgtgatgcaggagacctacaggaacctcactgctataggttacaattgggaagaccatagtattgaagaacattgtcaaagtttcagaagacatggaaggcatgaaagatgtcatactggagagaaaccatctgaaaatactcagtgtggtaaagcctttgcacaacatagtcgtctccaaagacataaaaacacacatactggagagaaactctgtgaatgtaagccacatgataaagcctttacatacgattctcagcttcaaactcttgaaaggattcatagtggagaaaaaccctacaaatataatcaatgtggtaaagcctttgaacgtcgttgtaatcttggaaggcataaactaatacatactggaagaaaatcctacaaatgcaatcagtgtggtaaagccttttcacaaaacagtcatctccaaacacataaaagcacacatactagagaggaactctataaatgtaagcaatgcggtaaagcctttacatgccataatgaacttcaaagtcataaaaggattcatactggagagaaatcctacgaatgcaatcagtgtggtaaagcctttaaatctcataggtatctccaagtacataaagcaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagcctttgcacgactcagtcatctcaaaacgcatggaataacacatagtggaaagaagccttgtaagtgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcggtgtggtaaagcctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgattggtgtggtaaagcctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcggtgtgataaagcctttgcatatcatagttatctccaagtacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagtacataaaaaaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagactttgtagttcagagtgatcttaaaagacataaaagaacacatactggagagaaaccttacaaatgtaatgaatgtggtaaggcctttgtaggtcagaatgatcttaaaaaacataaaagaaaacatactggcgagaaaccttatgaatataatgaatgtggtaaagcctttgtaggtcagaatagccttaaaaggcatgaaagaattcatactggagagaaaccttatgaatgtaatgaatgtggtaaagcctttgtaggtcagagtaaccttaaagggcatgaaagaattcatggtggagagaaaccttatgaatgtaatgaatgtggtaaaggctttgtatgtaacgatagactccaaacacataaagcaatacatactggagtgaaaccttaagaatgtaagcaatatggtaaagcctttgtaggtcagaatgaccttaaaaggcatgaaagaattcatactggagagaaaccttacaaatgtaatgaatgtggtaaagcctttgtatgtaatgctagtctccgaaaaca
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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