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Previous release (v1)
2024-04-20 22:14:57, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039098324 3671 bp mRNA linear ROD 11-JUN-2023
DEFINITION PREDICTED: Rattus norvegicus zinc finger protein 729-like
(LOC102548633), transcript variant X2, mRNA.
ACCESSION XM_039098324
VERSION XM_039098324.1
DBLINK BioProject: PRJNA677964
KEYWORDS RefSeq.
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_051336.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Updated annotation
Annotation Name :: GCF_015227675.2-RS_2023_06
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.1
Annotation Method :: Best-placed RefSeq; Gnomon;
cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 06/06/2023
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..3671
/organism="Rattus norvegicus"
/mol_type="mRNA"
/strain="BN/NHsdMcwi"
/db_xref="taxon:10116"
/chromosome="1"
/sex="male"
/tissue_type="kidney"
/country="USA: Wisconsin, Milwaukee, Medical College of
Wisconsin"
/collection_date="2019-03-08"
/collected_by="Rebecca Schilling"
gene 1..3671
/gene="LOC102548633"
/note="zinc finger protein 729-like; Derived by automated
computational analysis using gene prediction method:
Gnomon. Supporting evidence includes similarity to: 3 long
SRA reads, 10 Proteins, and 99% coverage of the annotated
genomic feature by RNAseq alignments, including 12 samples
with support for all annotated introns"
/db_xref="GeneID:102548633"
/db_xref="RGD:7713719"
CDS 833..2986
/gene="LOC102548633"
/codon_start=1
/product="zinc finger protein 431-like isoform X2"
/protein_id="XP_038954252.1"
/db_xref="GeneID:102548633"
/db_xref="RGD:7713719"
/translation="
MDALTYDDVHVNFTREEWALLDPSQKSLYKDVMQETYRNLTAIGYNWEDHSIEEHCQSFRRHERHERCHTGEKTSENTQCGKAFAQHSHLQRHKSTHTGEKLYECKPRDKAFTYDSQLQTLERIHTGEKPYKCNQCGKAFERRCNLGRHKLIHTGRKSYKCNQCGKAFAQHSHLKTHGITHTGEKPYECDQCGKAFAYHSSLQVHKRIHTGEKPYECDWYGKAFVDQNDLKRHERIHTGEKPYKCNECDKAFGNHRNFRLHKMMHAGEKLYKCNECGKAFSQISHLQTHKSTHTREELYECKQCGKAFTCHNELQSHKRIHTGEKSYECNQCGKVFKSHRYLQVHKTIHTGEKPYVCDQCGKAFAHGPLRWHKIMHTRKKTYKCNQCGKAFARHSHLKTHGVTHTGEKPYKCDQCGKAFASHSYLQVHKRIHTGEKPYECDQCGKAFTSHSYLQVHKRIHTGEKPYVCDQCGKAFAQLSHLQVHGITHTGEKPYKCAQCGKAFASHSYLQVHKRIHTGENLYECNQCGKAFASHSPLQVHKRIHTGEKPYVCDQCGKDFVVQSDLKRHKRTHTGEKPYKCNECGKAFVRNGSLRTHKVIHTGEKPYKCNECGKAFVWNGSLRTHKVIHTGEKPYKCNECGKAFACNTSLRTHKAIHTGVKRFKCKQCGKAFVGQNYLKKHERIHTGEKLYKCNECGKAFVFDSSLRKHKAVHTGVKP"
misc_feature 842..964
/gene="LOC102548633"
/note="KRAB box; Region: KRAB; pfam01352"
/db_xref="CDD:426216"
misc_feature <1025..1531
/gene="LOC102548633"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 1064..1207
/gene="LOC102548633"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1229..1291
/gene="LOC102548633"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1229..1231,1238..1240,1277..1279,1289..1291)
/gene="LOC102548633"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature 1301..2431
/gene="LOC102548633"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 1313..1375
/gene="LOC102548633"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1313..1315,1322..1324,1361..1363,1373..1375)
/gene="LOC102548633"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(1328..1330,1334..1336,1340..1342,1346..1351,
1358..1363,1370..1372,1412..1414,1418..1420,1430..1435,
1442..1447,1454..1456,1496..1498,1502..1504,1508..1510,
1514..1519,1526..1531,1538..1540)
/gene="LOC102548633"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 1397..1459
/gene="LOC102548633"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1481..1543
/gene="LOC102548633"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1565..1627
/gene="LOC102548633"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1649..1711
/gene="LOC102548633"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1649..1651,1658..1660,1697..1699,1709..1711)
/gene="LOC102548633"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(1664..1666,1670..1672,1676..1678,1682..1687,
1694..1699,1706..1708,1748..1750,1754..1756,1766..1771,
1778..1783,1790..1792,1832..1834,1838..1840,1844..1846,
1850..1855,1862..1867,1874..1876)
/gene="LOC102548633"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 1733..1795
/gene="LOC102548633"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1817..1879
/gene="LOC102548633"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1982..2044
/gene="LOC102548633"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1982..1984,1991..1993,2030..2032,2042..2044)
/gene="LOC102548633"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(1997..1999,2003..2005,2009..2011,2015..2020,
2027..2032,2039..2041,2081..2083,2087..2089,2099..2104,
2111..2116,2123..2125,2165..2167,2171..2173,2177..2179,
2183..2188,2195..2200,2207..2209)
/gene="LOC102548633"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 2054..>2983
/gene="LOC102548633"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 2066..2128
/gene="LOC102548633"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2150..2212
/gene="LOC102548633"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2234..2296
/gene="LOC102548633"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2318..2380
/gene="LOC102548633"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2402..2464
/gene="LOC102548633"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(2402..2404,2411..2413,2450..2452,2462..2464)
/gene="LOC102548633"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(2417..2419,2423..2425,2429..2431,2435..2440,
2447..2452,2459..2461,2501..2503,2507..2509,2519..2524,
2531..2536,2543..2545,2585..2587,2591..2593,2597..2599,
2603..2608,2615..2620,2627..2629)
/gene="LOC102548633"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 2486..2548
/gene="LOC102548633"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2570..2632
/gene="LOC102548633"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2654..2716
/gene="LOC102548633"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2738..2800
/gene="LOC102548633"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2822..2884
/gene="LOC102548633"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2906..2968
/gene="LOC102548633"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
ORIGIN
gaagagcttctagggaagggaaaacttggcccctgcgctgtaaagttcaaggtacaaggtggggtatgctagacacgccctgttacaggtggggactgaggagtgctgggagaacctggaggcccagacagctttggtgtgttaaatatatgaaggtcagctgattgtcgggtttgaatcccaacagccacaaaacaaaactcttgtttcctcaaatctctctttaattgttaatatcttggccacccttccacttgtgggacagattaatgaccccactgcaagttgagtatgggggttatgcaagctgtataccttgattccaggagaagaaagggaaagagcttactgagttttgtgggctgagttcaggttgaagtgaggacctggtgagcacagggtcaccgcccacaaaagggaggaggaagcggctgagcggtggtaggtggcctggtgggtacttcctagggctgggcggggagacagatgagaacgctattggaggacaggcacaagtgctactgaaatgcaaatccctgtagatctggaaatggtctggccctgggcttgaagcttaggccgagagctgtgtatcctcactgtatcttcagctcactctaaccattacggaggtgctcaagtcactcaagactactggccaatcagagtcttcactggaggagccaatcagaagagaaggcgggcatttccgtgtgccttgttgcaggattcgcttagtggccaagccttcttaaatggtcctggctgctgtgctctgtgtccctcggttggattctgtgaggcatgctcaggcaagctccaaagttgcgacatggacgcattaacctatgatgatgtacatgtgaacttcactcgagaagaatgggctttgctggatccttcacagaagagtctctacaaagatgtgatgcaggagacctataggaacctcactgctataggttacaattgggaagaccatagtattgaagaacattgtcaaagtttcagaagacatgaaaggcatgaaagatgtcatactggagagaaaacctctgaaaatactcagtgtggtaaagcctttgcacaacatagtcatctccaaagacataagagcacacatactggagagaaactctatgaatgtaagccacgtgataaagcctttacatacgattctcagcttcaaactcttgaaaggattcatactggagaaaaaccctacaaatgtaatcaatgtggtaaagcctttgaacgtcgttgtaatcttggaaggcataaactaatacatactggaagaaaatcctacaaatgcaatcagtgtggtaaagcctttgcacaacacagtcatctcaaaacgcatggaataacacatactggagagaaaccttacgaatgtgatcagtgtggtaaagcctttgcatatcatagttctctccaagtacataaaagaatacatactggagagaagccctatgaatgtgattggtatggtaaagcctttgtagatcagaatgatcttaaaaggcatgaaagaattcatactggagagaaaccctacaaatgtaatgaatgtgataaagcctttggaaatcaccgtaattttcgactgcataaaatgatgcatgctggagaaaaactctacaaatgcaatgaatgtggtaaagccttttcacaaatcagtcatctccaaacacataaaagcacacatactagagaggaactctatgaatgtaaacaatgtggtaaagcctttacatgccataatgaacttcaaagtcataaaaggattcatactggagagaaatcctatgaatgcaatcaatgtggtaaagtctttaaatctcatcgttatctccaagtacataaaacaatacatactggagagaagccctatgtgtgtgatcaatgtggtaaagcctttgcacatggtcctcttagatggcataaaataatgcatactaggaaaaaaacctacaaatgcaatcagtgtggtaaagcctttgcacgacacagccatctcaaaacgcatggagtaacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaagccctatgaatgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgcgaccaatgtggtaaagcctttgcacaactcagtcatctccaagttcatggaataacacatactggagagaaaccttacaagtgtgctcaatgtggtaaagcctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaatctctatgaatgtaatcaatgtggtaaagcctttgcatctcatagtcctctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagactttgtagttcagagtgatcttaaaagacataaaagaacacatactggcgagaaaccttacaaatgtaatgaatgtggtaaagcctttgtacggaatggtagtctccgaacacataaagtaatacatactggagagaaaccttacaaatgtaatgaatgtggtaaagcctttgtatggaatggtagtctccgaacacataaagtaatacatactggagagaaaccttacaaatgtaatgaatgtggtaaagcctttgcatgtaacactagtctccgaacacataaagcaatacatactggagtgaaacgtttcaaatgtaagcaatgtggtaaagcctttgtaggtcagaattaccttaaaaagcatgaaagaattcatactggagagaaactttacaaatgtaatgaatgtggtaaagcctttgtttttgattctagtctccgaaaacataaagcagtacatactggagtgaaaccttaagaatgtaagcaatgtggtaagcctttgtaggtcagaatgaccttaaaaagcatgaaagaattcatactggagagaaaccttacaaatgtaatgaatgtggtaaagcctttgtatgtaatgctagtctccgaaaacataaagcaacacatactagagtgaaaccttatgattgtaagcaatttagtaagttctttgcctctcatgatcaacttcgacaacatgaaagaattgatacaggagagaaaccttaaaatgtagtcaatgtggtaaagccttttcacaatcaagccacctccaactacataaaagaacacatacatactaaagagtaaccttatgaatgtaaccaatgtaataaagcctttactgtgatcttcaaaggtatggtggtttaaatatacttggcccattgcaagtggcagtgttaggaggtatggcctttttggagtagatgtggactttgaggaagtatgtcactgtgggggagggtgggctttgagtccccatgcttaaactctacccagggcagaagagtcttctggctgccttctgatcaagatgtagaactctctcctccagcagcatgtctgcttggacactgacattccttccaccttgataatagactgaacctctgaatctgtatacctcccctccccccaattaaatgtcctttctaagagtt
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]