2024-03-29 08:56:13, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039098323 2879 bp mRNA linear ROD 11-JUN-2023 DEFINITION PREDICTED: Rattus norvegicus zinc finger protein 729-like (LOC102548633), transcript variant X1, mRNA. ACCESSION XM_039098323 VERSION XM_039098323.1 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051336.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_015227675.2-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2879 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /db_xref="taxon:10116" /chromosome="1" /sex="male" /tissue_type="kidney" /country="USA: Wisconsin, Milwaukee, Medical College of Wisconsin" /collection_date="2019-03-08" /collected_by="Rebecca Schilling" gene 1..2879 /gene="LOC102548633" /note="zinc finger protein 729-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 10 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 41 samples with support for all annotated introns" /db_xref="GeneID:102548633" /db_xref="RGD:7713719" CDS 14..2194 /gene="LOC102548633" /codon_start=1 /product="zinc finger protein 431-like isoform X1" /protein_id="XP_038954251.1" /db_xref="GeneID:102548633" /db_xref="RGD:7713719" /translation="
MLRVCSVYLQDALTYDDVHVNFTREEWALLDPSQKSLYKDVMQETYRNLTAIGYNWEDHSIEEHCQSFRRHERHERCHTGEKTSENTQCGKAFAQHSHLQRHKSTHTGEKLYECKPRDKAFTYDSQLQTLERIHTGEKPYKCNQCGKAFERRCNLGRHKLIHTGRKSYKCNQCGKAFAQHSHLKTHGITHTGEKPYECDQCGKAFAYHSSLQVHKRIHTGEKPYECDWYGKAFVDQNDLKRHERIHTGEKPYKCNECDKAFGNHRNFRLHKMMHAGEKLYKCNECGKAFSQISHLQTHKSTHTREELYECKQCGKAFTCHNELQSHKRIHTGEKSYECNQCGKVFKSHRYLQVHKTIHTGEKPYVCDQCGKAFAHGPLRWHKIMHTRKKTYKCNQCGKAFARHSHLKTHGVTHTGEKPYKCDQCGKAFASHSYLQVHKRIHTGEKPYECDQCGKAFTSHSYLQVHKRIHTGEKPYVCDQCGKAFAQLSHLQVHGITHTGEKPYKCAQCGKAFASHSYLQVHKRIHTGENLYECNQCGKAFASHSPLQVHKRIHTGEKPYVCDQCGKDFVVQSDLKRHKRTHTGEKPYKCNECGKAFVRNGSLRTHKVIHTGEKPYKCNECGKAFVWNGSLRTHKVIHTGEKPYKCNECGKAFACNTSLRTHKAIHTGVKRFKCKQCGKAFVGQNYLKKHERIHTGEKLYKCNECGKAFVFDSSLRKHKAVHTGVKP"
misc_feature 50..172 /gene="LOC102548633" /note="KRAB box; Region: KRAB; pfam01352" /db_xref="CDD:426216" misc_feature <233..739 /gene="LOC102548633" /note="FOG: Zn-finger [General function prediction only]; Region: COG5048" /db_xref="CDD:227381" misc_feature 272..415 /gene="LOC102548633" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 437..499 /gene="LOC102548633" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(437..439,446..448,485..487,497..499) /gene="LOC102548633" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature 509..1639 /gene="LOC102548633" /note="FOG: Zn-finger [General function prediction only]; Region: COG5048" /db_xref="CDD:227381" misc_feature 521..583 /gene="LOC102548633" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(521..523,530..532,569..571,581..583) /gene="LOC102548633" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature order(536..538,542..544,548..550,554..559,566..571, 578..580,620..622,626..628,638..643,650..655,662..664, 704..706,710..712,716..718,722..727,734..739,746..748) /gene="LOC102548633" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 605..667 /gene="LOC102548633" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 689..751 /gene="LOC102548633" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 773..835 /gene="LOC102548633" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 857..919 /gene="LOC102548633" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(857..859,866..868,905..907,917..919) /gene="LOC102548633" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature order(872..874,878..880,884..886,890..895,902..907, 914..916,956..958,962..964,974..979,986..991,998..1000, 1040..1042,1046..1048,1052..1054,1058..1063,1070..1075, 1082..1084) /gene="LOC102548633" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 941..1003 /gene="LOC102548633" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1025..1087 /gene="LOC102548633" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1190..1252 /gene="LOC102548633" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1190..1192,1199..1201,1238..1240,1250..1252) /gene="LOC102548633" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature order(1205..1207,1211..1213,1217..1219,1223..1228, 1235..1240,1247..1249,1289..1291,1295..1297,1307..1312, 1319..1324,1331..1333,1373..1375,1379..1381,1385..1387, 1391..1396,1403..1408,1415..1417) /gene="LOC102548633" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 1262..>2191 /gene="LOC102548633" /note="FOG: Zn-finger [General function prediction only]; Region: COG5048" /db_xref="CDD:227381" misc_feature 1274..1336 /gene="LOC102548633" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1358..1420 /gene="LOC102548633" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1442..1504 /gene="LOC102548633" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1526..1588 /gene="LOC102548633" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1610..1672 /gene="LOC102548633" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1610..1612,1619..1621,1658..1660,1670..1672) /gene="LOC102548633" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:275368" misc_feature order(1625..1627,1631..1633,1637..1639,1643..1648, 1655..1660,1667..1669,1709..1711,1715..1717,1727..1732, 1739..1744,1751..1753,1793..1795,1799..1801,1805..1807, 1811..1816,1823..1828,1835..1837) /gene="LOC102548633" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 1694..1756 /gene="LOC102548633" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1778..1840 /gene="LOC102548633" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1862..1924 /gene="LOC102548633" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 1946..2008 /gene="LOC102548633" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2030..2092 /gene="LOC102548633" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2114..2176 /gene="LOC102548633" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" ORIGIN
gccatggcaggtgatgttaagagtctgctctgtgtatttacaggacgcattaacctatgatgatgtacatgtgaacttcactcgagaagaatgggctttgctggatccttcacagaagagtctctacaaagatgtgatgcaggagacctataggaacctcactgctataggttacaattgggaagaccatagtattgaagaacattgtcaaagtttcagaagacatgaaaggcatgaaagatgtcatactggagagaaaacctctgaaaatactcagtgtggtaaagcctttgcacaacatagtcatctccaaagacataagagcacacatactggagagaaactctatgaatgtaagccacgtgataaagcctttacatacgattctcagcttcaaactcttgaaaggattcatactggagaaaaaccctacaaatgtaatcaatgtggtaaagcctttgaacgtcgttgtaatcttggaaggcataaactaatacatactggaagaaaatcctacaaatgcaatcagtgtggtaaagcctttgcacaacacagtcatctcaaaacgcatggaataacacatactggagagaaaccttacgaatgtgatcagtgtggtaaagcctttgcatatcatagttctctccaagtacataaaagaatacatactggagagaagccctatgaatgtgattggtatggtaaagcctttgtagatcagaatgatcttaaaaggcatgaaagaattcatactggagagaaaccctacaaatgtaatgaatgtgataaagcctttggaaatcaccgtaattttcgactgcataaaatgatgcatgctggagaaaaactctacaaatgcaatgaatgtggtaaagccttttcacaaatcagtcatctccaaacacataaaagcacacatactagagaggaactctatgaatgtaaacaatgtggtaaagcctttacatgccataatgaacttcaaagtcataaaaggattcatactggagagaaatcctatgaatgcaatcaatgtggtaaagtctttaaatctcatcgttatctccaagtacataaaacaatacatactggagagaagccctatgtgtgtgatcaatgtggtaaagcctttgcacatggtcctcttagatggcataaaataatgcatactaggaaaaaaacctacaaatgcaatcagtgtggtaaagcctttgcacgacacagccatctcaaaacgcatggagtaacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaagccctatgaatgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgcgaccaatgtggtaaagcctttgcacaactcagtcatctccaagttcatggaataacacatactggagagaaaccttacaagtgtgctcaatgtggtaaagcctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaatctctatgaatgtaatcaatgtggtaaagcctttgcatctcatagtcctctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagactttgtagttcagagtgatcttaaaagacataaaagaacacatactggcgagaaaccttacaaatgtaatgaatgtggtaaagcctttgtacggaatggtagtctccgaacacataaagtaatacatactggagagaaaccttacaaatgtaatgaatgtggtaaagcctttgtatggaatggtagtctccgaacacataaagtaatacatactggagagaaaccttacaaatgtaatgaatgtggtaaagcctttgcatgtaacactagtctccgaacacataaagcaatacatactggagtgaaacgtttcaaatgtaagcaatgtggtaaagcctttgtaggtcagaattaccttaaaaagcatgaaagaattcatactggagagaaactttacaaatgtaatgaatgtggtaaagcctttgtttttgattctagtctccgaaaacataaagcagtacatactggagtgaaaccttaagaatgtaagcaatgtggtaagcctttgtaggtcagaatgaccttaaaaagcatgaaagaattcatactggagagaaaccttacaaatgtaatgaatgtggtaaagcctttgtatgtaatgctagtctccgaaaacataaagcaacacatactagagtgaaaccttatgattgtaagcaatttagtaagttctttgcctctcatgatcaacttcgacaacatgaaagaattgatacaggagagaaaccttaaaatgtagtcaatgtggtaaagccttttcacaatcaagccacctccaactacataaaagaacacatacatactaaagagtaaccttatgaatgtaaccaatgtaataaagcctttactgtgatcttcaaaggtatggtggtttaaatatacttggcccattgcaagtggcagtgttaggaggtatggcctttttggagtagatgtggactttgaggaagtatgtcactgtgggggagggtgggctttgagtccccatgcttaaactctacccagggcagaagagtcttctggctgccttctgatcaagatgtagaactctctcctccagcagcatgtctgcttggacactgacattccttccaccttgataatagactgaacctctgaatctgtatacctcccctccccccaattaaatgtcctttctaagagtt
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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