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2024-03-29 08:56:13, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_039098323            2879 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger protein 729-like
            (LOC102548633), transcript variant X1, mRNA.
ACCESSION   XM_039098323
VERSION     XM_039098323.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2879
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /country="USA: Wisconsin, Milwaukee, Medical College of
                     Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2879
                     /gene="LOC102548633"
                     /note="zinc finger protein 729-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1 long
                     SRA read, 10 Proteins, and 99% coverage of the annotated
                     genomic feature by RNAseq alignments, including 41 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:102548633"
                     /db_xref="RGD:7713719"
     CDS             14..2194
                     /gene="LOC102548633"
                     /codon_start=1
                     /product="zinc finger protein 431-like isoform X1"
                     /protein_id="XP_038954251.1"
                     /db_xref="GeneID:102548633"
                     /db_xref="RGD:7713719"
                     /translation="
MLRVCSVYLQDALTYDDVHVNFTREEWALLDPSQKSLYKDVMQETYRNLTAIGYNWEDHSIEEHCQSFRRHERHERCHTGEKTSENTQCGKAFAQHSHLQRHKSTHTGEKLYECKPRDKAFTYDSQLQTLERIHTGEKPYKCNQCGKAFERRCNLGRHKLIHTGRKSYKCNQCGKAFAQHSHLKTHGITHTGEKPYECDQCGKAFAYHSSLQVHKRIHTGEKPYECDWYGKAFVDQNDLKRHERIHTGEKPYKCNECDKAFGNHRNFRLHKMMHAGEKLYKCNECGKAFSQISHLQTHKSTHTREELYECKQCGKAFTCHNELQSHKRIHTGEKSYECNQCGKVFKSHRYLQVHKTIHTGEKPYVCDQCGKAFAHGPLRWHKIMHTRKKTYKCNQCGKAFARHSHLKTHGVTHTGEKPYKCDQCGKAFASHSYLQVHKRIHTGEKPYECDQCGKAFTSHSYLQVHKRIHTGEKPYVCDQCGKAFAQLSHLQVHGITHTGEKPYKCAQCGKAFASHSYLQVHKRIHTGENLYECNQCGKAFASHSPLQVHKRIHTGEKPYVCDQCGKDFVVQSDLKRHKRTHTGEKPYKCNECGKAFVRNGSLRTHKVIHTGEKPYKCNECGKAFVWNGSLRTHKVIHTGEKPYKCNECGKAFACNTSLRTHKAIHTGVKRFKCKQCGKAFVGQNYLKKHERIHTGEKLYKCNECGKAFVFDSSLRKHKAVHTGVKP"
     misc_feature    50..172
                     /gene="LOC102548633"
                     /note="KRAB box; Region: KRAB; pfam01352"
                     /db_xref="CDD:426216"
     misc_feature    <233..739
                     /gene="LOC102548633"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    272..415
                     /gene="LOC102548633"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    437..499
                     /gene="LOC102548633"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(437..439,446..448,485..487,497..499)
                     /gene="LOC102548633"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    509..1639
                     /gene="LOC102548633"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    521..583
                     /gene="LOC102548633"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(521..523,530..532,569..571,581..583)
                     /gene="LOC102548633"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(536..538,542..544,548..550,554..559,566..571,
                     578..580,620..622,626..628,638..643,650..655,662..664,
                     704..706,710..712,716..718,722..727,734..739,746..748)
                     /gene="LOC102548633"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    605..667
                     /gene="LOC102548633"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    689..751
                     /gene="LOC102548633"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    773..835
                     /gene="LOC102548633"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    857..919
                     /gene="LOC102548633"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(857..859,866..868,905..907,917..919)
                     /gene="LOC102548633"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(872..874,878..880,884..886,890..895,902..907,
                     914..916,956..958,962..964,974..979,986..991,998..1000,
                     1040..1042,1046..1048,1052..1054,1058..1063,1070..1075,
                     1082..1084)
                     /gene="LOC102548633"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    941..1003
                     /gene="LOC102548633"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1025..1087
                     /gene="LOC102548633"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1190..1252
                     /gene="LOC102548633"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1190..1192,1199..1201,1238..1240,1250..1252)
                     /gene="LOC102548633"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(1205..1207,1211..1213,1217..1219,1223..1228,
                     1235..1240,1247..1249,1289..1291,1295..1297,1307..1312,
                     1319..1324,1331..1333,1373..1375,1379..1381,1385..1387,
                     1391..1396,1403..1408,1415..1417)
                     /gene="LOC102548633"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1262..>2191
                     /gene="LOC102548633"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    1274..1336
                     /gene="LOC102548633"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1358..1420
                     /gene="LOC102548633"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1442..1504
                     /gene="LOC102548633"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1526..1588
                     /gene="LOC102548633"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1610..1672
                     /gene="LOC102548633"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1610..1612,1619..1621,1658..1660,1670..1672)
                     /gene="LOC102548633"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(1625..1627,1631..1633,1637..1639,1643..1648,
                     1655..1660,1667..1669,1709..1711,1715..1717,1727..1732,
                     1739..1744,1751..1753,1793..1795,1799..1801,1805..1807,
                     1811..1816,1823..1828,1835..1837)
                     /gene="LOC102548633"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1694..1756
                     /gene="LOC102548633"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1778..1840
                     /gene="LOC102548633"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1862..1924
                     /gene="LOC102548633"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1946..2008
                     /gene="LOC102548633"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2030..2092
                     /gene="LOC102548633"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2114..2176
                     /gene="LOC102548633"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      
gccatggcaggtgatgttaagagtctgctctgtgtatttacaggacgcattaacctatgatgatgtacatgtgaacttcactcgagaagaatgggctttgctggatccttcacagaagagtctctacaaagatgtgatgcaggagacctataggaacctcactgctataggttacaattgggaagaccatagtattgaagaacattgtcaaagtttcagaagacatgaaaggcatgaaagatgtcatactggagagaaaacctctgaaaatactcagtgtggtaaagcctttgcacaacatagtcatctccaaagacataagagcacacatactggagagaaactctatgaatgtaagccacgtgataaagcctttacatacgattctcagcttcaaactcttgaaaggattcatactggagaaaaaccctacaaatgtaatcaatgtggtaaagcctttgaacgtcgttgtaatcttggaaggcataaactaatacatactggaagaaaatcctacaaatgcaatcagtgtggtaaagcctttgcacaacacagtcatctcaaaacgcatggaataacacatactggagagaaaccttacgaatgtgatcagtgtggtaaagcctttgcatatcatagttctctccaagtacataaaagaatacatactggagagaagccctatgaatgtgattggtatggtaaagcctttgtagatcagaatgatcttaaaaggcatgaaagaattcatactggagagaaaccctacaaatgtaatgaatgtgataaagcctttggaaatcaccgtaattttcgactgcataaaatgatgcatgctggagaaaaactctacaaatgcaatgaatgtggtaaagccttttcacaaatcagtcatctccaaacacataaaagcacacatactagagaggaactctatgaatgtaaacaatgtggtaaagcctttacatgccataatgaacttcaaagtcataaaaggattcatactggagagaaatcctatgaatgcaatcaatgtggtaaagtctttaaatctcatcgttatctccaagtacataaaacaatacatactggagagaagccctatgtgtgtgatcaatgtggtaaagcctttgcacatggtcctcttagatggcataaaataatgcatactaggaaaaaaacctacaaatgcaatcagtgtggtaaagcctttgcacgacacagccatctcaaaacgcatggagtaacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaagccctatgaatgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgcgaccaatgtggtaaagcctttgcacaactcagtcatctccaagttcatggaataacacatactggagagaaaccttacaagtgtgctcaatgtggtaaagcctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaatctctatgaatgtaatcaatgtggtaaagcctttgcatctcatagtcctctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagactttgtagttcagagtgatcttaaaagacataaaagaacacatactggcgagaaaccttacaaatgtaatgaatgtggtaaagcctttgtacggaatggtagtctccgaacacataaagtaatacatactggagagaaaccttacaaatgtaatgaatgtggtaaagcctttgtatggaatggtagtctccgaacacataaagtaatacatactggagagaaaccttacaaatgtaatgaatgtggtaaagcctttgcatgtaacactagtctccgaacacataaagcaatacatactggagtgaaacgtttcaaatgtaagcaatgtggtaaagcctttgtaggtcagaattaccttaaaaagcatgaaagaattcatactggagagaaactttacaaatgtaatgaatgtggtaaagcctttgtttttgattctagtctccgaaaacataaagcagtacatactggagtgaaaccttaagaatgtaagcaatgtggtaagcctttgtaggtcagaatgaccttaaaaagcatgaaagaattcatactggagagaaaccttacaaatgtaatgaatgtggtaaagcctttgtatgtaatgctagtctccgaaaacataaagcaacacatactagagtgaaaccttatgattgtaagcaatttagtaagttctttgcctctcatgatcaacttcgacaacatgaaagaattgatacaggagagaaaccttaaaatgtagtcaatgtggtaaagccttttcacaatcaagccacctccaactacataaaagaacacatacatactaaagagtaaccttatgaatgtaaccaatgtaataaagcctttactgtgatcttcaaaggtatggtggtttaaatatacttggcccattgcaagtggcagtgttaggaggtatggcctttttggagtagatgtggactttgaggaagtatgtcactgtgggggagggtgggctttgagtccccatgcttaaactctacccagggcagaagagtcttctggctgccttctgatcaagatgtagaactctctcctccagcagcatgtctgcttggacactgacattccttccaccttgataatagactgaacctctgaatctgtatacctcccctccccccaattaaatgtcctttctaagagtt
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]