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Previous release (v1)
2024-04-26 04:44:00, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039098294 3373 bp mRNA linear ROD 11-JUN-2023
DEFINITION PREDICTED: Rattus norvegicus sperm motility kinase X-like
(LOC103693496), transcript variant X4, mRNA.
ACCESSION XM_039098294
VERSION XM_039098294.1
DBLINK BioProject: PRJNA677964
KEYWORDS RefSeq.
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_051336.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Updated annotation
Annotation Name :: GCF_015227675.2-RS_2023_06
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.1
Annotation Method :: Best-placed RefSeq; Gnomon;
cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 06/06/2023
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..3373
/organism="Rattus norvegicus"
/mol_type="mRNA"
/strain="BN/NHsdMcwi"
/db_xref="taxon:10116"
/chromosome="1"
/sex="male"
/tissue_type="kidney"
/country="USA: Wisconsin, Milwaukee, Medical College of
Wisconsin"
/collection_date="2019-03-08"
/collected_by="Rebecca Schilling"
gene 1..3373
/gene="LOC103693496"
/note="sperm motility kinase X-like; Derived by automated
computational analysis using gene prediction method:
Gnomon. Supporting evidence includes similarity to: 2
Proteins, and 90% coverage of the annotated genomic
feature by RNAseq alignments, including 3 samples with
support for all annotated introns"
/db_xref="GeneID:103693496"
/db_xref="RGD:9090555"
CDS 1512..3236
/gene="LOC103693496"
/codon_start=1
/product="zinc finger protein 431-like isoform X3"
/protein_id="XP_038954222.1"
/db_xref="GeneID:103693496"
/db_xref="RGD:9090555"
/translation="
MQETYRNLTAIGYNWEDHTIEEHCQSFRRHGRHERCHTGEKPSENTQCGKAFAQHSHLQRHKSTHTGEKLYECKPRDKAFTYDSQLQTLERIHTGEKPYKCNQCGKAFERRCTLGRHKLIHTGRKSYKCNQCGKAFARHSHLKTHGITHTGEKPYECDQCGKAFAYHSYLQVHKRIHTGEKPYECNQCGKAFVGQNDLKRHERIHTGEKPYKCNECDKGFGHHRNFRMHKMMHAGEKPYKCNQCGKAFSQNSHLQTHKSTHTGEKPYKCDQCGKAFTSHSYLQVHKRIHTGEKLCECEQCGKAFASHSYLKVHKRIHTGENLYECNQCGKTFASHSYLQVHKRIHTGEKLYECDQCGKAFASHSYLQVHKRIHTGEKLYECDQCGKAFASHSPLQVHKRIHTGEKPYVCDQCGKDFVVQSDLKRHKRTHTGEKPYKCNECGKAFVGQNDLKKHKRKHTGEKPYKCNECGKAFVWNGSLRTHKVIHSGEKPYKCNECGKAFACNTSLRTHKAIHTGVKPFKCKHCGKAFVGQNDLKRHERIHTGEKLYKCNECGKAFVFDSSLRKYKAVHTGVKP"
misc_feature <1608..2114
/gene="LOC103693496"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 1647..1790
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1812..1874
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1812..1814,1821..1823,1860..1862,1872..1874)
/gene="LOC103693496"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature 1884..3191
/gene="LOC103693496"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 1896..1958
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1896..1898,1905..1907,1944..1946,1956..1958)
/gene="LOC103693496"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(1911..1913,1917..1919,1923..1925,1929..1934,
1941..1946,1953..1955,1995..1997,2001..2003,2013..2018,
2025..2030,2037..2039,2079..2081,2085..2087,2091..2093,
2097..2102,2109..2114,2121..2123)
/gene="LOC103693496"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 1980..2042
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2064..2126
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2148..2210
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(2148..2150,2157..2159,2196..2198,2208..2210)
/gene="LOC103693496"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature 2232..2294
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(2232..2234,2241..2243,2280..2282,2292..2294)
/gene="LOC103693496"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(2247..2249,2253..2255,2259..2261,2265..2270,
2277..2282,2289..2291,2331..2333,2337..2339,2349..2354,
2361..2366,2373..2375,2415..2417,2421..2423,2427..2429,
2433..2438,2445..2450,2457..2459)
/gene="LOC103693496"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 2316..2378
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2400..2462
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2484..2546
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(2484..2486,2493..2495,2532..2534,2544..2546)
/gene="LOC103693496"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(2499..2501,2505..2507,2511..2513,2517..2522,
2529..2534,2541..2543,2583..2585,2589..2591,2601..2606,
2613..2618,2625..2627,2667..2669,2673..2675,2679..2681,
2685..2690,2697..2702,2709..2711)
/gene="LOC103693496"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 2568..2630
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2652..2714
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2736..2798
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(2736..2738,2745..2747,2784..2786,2796..2798)
/gene="LOC103693496"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(2751..2753,2757..2759,2763..2765,2769..2774,
2781..2786,2793..2795,2835..2837,2841..2843,2853..2858,
2865..2870,2877..2879,2919..2921,2925..2927,2931..2933,
2937..2942,2949..2954,2961..2963)
/gene="LOC103693496"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 2820..2882
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2904..2966
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2988..3050
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 3072..3134
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 3156..3218
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
ORIGIN
ggccttgggctatgggcctaacaggaaaaaaaaacaatggatcaatggacaatattggagacaaacatttgagtgtaagcagccctctactgcccaactgaggaagaatcttggaaacagaaagccagaagaaccagtgggctctgcccagccaccattggtccatttttgctccgacatcacaaagaagcatcgtaggacatcatagatacctgttcacttacagatctgcctgagactgtctcctgtacctacagtactgaagttggcatttgtttgaaaaactactagagtccgatgctgctggaagattctactggaacttccaggagcttttaaacattgacatagtgcatttatctccactttggtgagaagtatacgaccttctagaactggatttagtgtacttgtggactacctgacctgtatcccgagaaccaaatacaggtcctctgcagaaatcatagacattgtggactccaaagccagctccccagcctggacccagaaaatcagcaatgtgaaatcacttgaccatcctaactttatcaagctgtttcacatggtcagacaagagaaaacacctaccagttgaaggataatgcctcggatggagagatactagaacaagtcattgaaggtggggtctttagaggaaagtctctatgcaaggttcaaagatgtttgccgagatagtacatgctgtgcagtactgccatgaccatcaaattttccacagagacataaagtccagcaagctgttaatcgacagcagtaggaacaccaagctgtgtgattttggcctgggcagaagctagcagatttctgggacacacttccttacagtgccccagaattttagcaagcacaggaacatgagagctgccctgtggatatctggagtttaggggtcctcctgttcttcaaggtggccaggatctcagctttctgaggcaaatattttgcaggtgtgaaactgcagattatcaagcaccacaaactttagcattcctttttatgtttccatttattttttaaggtcatcattgaactattgatggtcaattccagaagaaatcccaccatccacaaaatcatgatgtgcctcatgattagtgaaatgaggcatgtttattacctccttcctgtgtatttctgctttgaagttttgaagaggaccagaagccagagagtaggaatgtacaggctctttcaacaattttatgtacaggtgacctggtctacattgaacaattgttgtacatggaaggctctgtgtaagacttaagatggtgttggaatattataaagacagaatcaggcatgaggagttcatggcgatgagagtgagtgacaagccactcgggtctcctgtctgagagttgagctgcttcctcacagatccgcgtacagaggatgcattgacctatgatgatgtacatgtgaacttcactcaagaagaatgggctttgctggatccttcacagaagagtctttacaaagatgtgatgcaggagacctataggaacctcactgctataggttacaattgggaagaccatactattgaagaacattgtcaaagtttcagaagacatggaaggcatgaaagatgtcatactggagagaagccctctgaaaatactcagtgtggtaaagcctttgcacaacatagtcatctccaaagacataagagcacacatactggagagaaactctatgaatgtaagccacgtgataaagcctttacatacgattctcagcttcaaactcttgaaaggattcatactggagaaaaaccctacaaatgtaatcaatgtggtaaagcctttgaacgtcgttgtactcttggaaggcataaactaatacatactggaagaaaatcctacaaatgcaatcagtgtggtaaagcctttgcacgacacagtcatctcaaaacgcatggaataacacatactggagagaaaccttacgaatgtgatcaatgtggtaaagcctttgcatatcatagttatctccaagtacataaaagaatacatactggagagaagccctatgaatgtaatcaatgtggtaaagcctttgtaggtcagaatgatcttaaaaggcatgaaagaattcatactggagagaaaccctacaaatgtaatgaatgtgataaaggctttggacatcaccgaaattttcgaatgcataaaatgatgcatgctggagaaaaaccctacaaatgcaatcaatgtggtaaagccttttcacaaaacagtcatctccaaacacataaaagcacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagctctgtgaatgtgagcaatgtggtaaagcctttgcatctcatagttatctcaaagtacataaaagaatacatactggagagaatctctatgaatgtaatcaatgtggtaaaacctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagttcataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgcatctcatagtcctctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagactttgtagttcagagtgatcttaaaagacataaaagaacacatactggtgagaaaccttacaaatgtaatgaatgtggtaaggcctttgtaggtcagaatgatcttaaaaaacataaaagaaaacatactggagagaaaccttacaaatgtaatgaatgtggtaaagcctttgtatggaatggtagtctccgaacacataaagtaatacatagtggagagaaaccttacaaatgtaatgaatgtggtaaagcctttgcatgtaacactagtctccgaacacataaagcaatacatactggagtgaaacctttcaaatgtaagcactgtggtaaagcctttgtaggtcagaatgaccttaaaaggcatgaaagaattcatactggagagaaactttacaaatgtaatgaatgtggtaaagcctttgtatttgattctagtctccgaaaatataaagcagtacatactggagtgaaaccttaagaatgtaagcaatgtggtaaagcctttgtatgtcagaattaccttaaaaagcatgaaagaattcatactggagagaaactttacaaatgtaatgaatgtggtaaagcctttgtatttgattctagtctccgaaaaca
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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