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Previous release (v1)
2024-04-19 18:51:15, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039098290 4323 bp mRNA linear ROD 11-JUN-2023
DEFINITION PREDICTED: Rattus norvegicus sperm motility kinase X-like
(LOC103693496), transcript variant X3, mRNA.
ACCESSION XM_039098290
VERSION XM_039098290.1
DBLINK BioProject: PRJNA677964
KEYWORDS RefSeq.
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_051336.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Updated annotation
Annotation Name :: GCF_015227675.2-RS_2023_06
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.1
Annotation Method :: Best-placed RefSeq; Gnomon;
cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 06/06/2023
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..4323
/organism="Rattus norvegicus"
/mol_type="mRNA"
/strain="BN/NHsdMcwi"
/db_xref="taxon:10116"
/chromosome="1"
/sex="male"
/tissue_type="kidney"
/country="USA: Wisconsin, Milwaukee, Medical College of
Wisconsin"
/collection_date="2019-03-08"
/collected_by="Rebecca Schilling"
gene 1..4323
/gene="LOC103693496"
/note="sperm motility kinase X-like; Derived by automated
computational analysis using gene prediction method:
Gnomon. Supporting evidence includes similarity to: 2
Proteins, and 92% coverage of the annotated genomic
feature by RNAseq alignments, including 3 samples with
support for all annotated introns"
/db_xref="GeneID:103693496"
/db_xref="RGD:9090555"
CDS 2462..4186
/gene="LOC103693496"
/codon_start=1
/product="zinc finger protein 431-like isoform X3"
/protein_id="XP_038954218.1"
/db_xref="GeneID:103693496"
/db_xref="RGD:9090555"
/translation="
MQETYRNLTAIGYNWEDHTIEEHCQSFRRHGRHERCHTGEKPSENTQCGKAFAQHSHLQRHKSTHTGEKLYECKPRDKAFTYDSQLQTLERIHTGEKPYKCNQCGKAFERRCTLGRHKLIHTGRKSYKCNQCGKAFARHSHLKTHGITHTGEKPYECDQCGKAFAYHSYLQVHKRIHTGEKPYECNQCGKAFVGQNDLKRHERIHTGEKPYKCNECDKGFGHHRNFRMHKMMHAGEKPYKCNQCGKAFSQNSHLQTHKSTHTGEKPYKCDQCGKAFTSHSYLQVHKRIHTGEKLCECEQCGKAFASHSYLKVHKRIHTGENLYECNQCGKTFASHSYLQVHKRIHTGEKLYECDQCGKAFASHSYLQVHKRIHTGEKLYECDQCGKAFASHSPLQVHKRIHTGEKPYVCDQCGKDFVVQSDLKRHKRTHTGEKPYKCNECGKAFVGQNDLKKHKRKHTGEKPYKCNECGKAFVWNGSLRTHKVIHSGEKPYKCNECGKAFACNTSLRTHKAIHTGVKPFKCKHCGKAFVGQNDLKRHERIHTGEKLYKCNECGKAFVFDSSLRKYKAVHTGVKP"
misc_feature <2558..3064
/gene="LOC103693496"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 2597..2740
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2762..2824
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(2762..2764,2771..2773,2810..2812,2822..2824)
/gene="LOC103693496"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature 2834..4141
/gene="LOC103693496"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 2846..2908
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(2846..2848,2855..2857,2894..2896,2906..2908)
/gene="LOC103693496"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(2861..2863,2867..2869,2873..2875,2879..2884,
2891..2896,2903..2905,2945..2947,2951..2953,2963..2968,
2975..2980,2987..2989,3029..3031,3035..3037,3041..3043,
3047..3052,3059..3064,3071..3073)
/gene="LOC103693496"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 2930..2992
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 3014..3076
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 3098..3160
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(3098..3100,3107..3109,3146..3148,3158..3160)
/gene="LOC103693496"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature 3182..3244
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(3182..3184,3191..3193,3230..3232,3242..3244)
/gene="LOC103693496"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(3197..3199,3203..3205,3209..3211,3215..3220,
3227..3232,3239..3241,3281..3283,3287..3289,3299..3304,
3311..3316,3323..3325,3365..3367,3371..3373,3377..3379,
3383..3388,3395..3400,3407..3409)
/gene="LOC103693496"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 3266..3328
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 3350..3412
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 3434..3496
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(3434..3436,3443..3445,3482..3484,3494..3496)
/gene="LOC103693496"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(3449..3451,3455..3457,3461..3463,3467..3472,
3479..3484,3491..3493,3533..3535,3539..3541,3551..3556,
3563..3568,3575..3577,3617..3619,3623..3625,3629..3631,
3635..3640,3647..3652,3659..3661)
/gene="LOC103693496"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 3518..3580
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 3602..3664
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 3686..3748
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(3686..3688,3695..3697,3734..3736,3746..3748)
/gene="LOC103693496"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(3701..3703,3707..3709,3713..3715,3719..3724,
3731..3736,3743..3745,3785..3787,3791..3793,3803..3808,
3815..3820,3827..3829,3869..3871,3875..3877,3881..3883,
3887..3892,3899..3904,3911..3913)
/gene="LOC103693496"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 3770..3832
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 3854..3916
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 3938..4000
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 4022..4084
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 4106..4168
/gene="LOC103693496"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
ORIGIN
ggccttgggctatgggcctaacaggaaaaaaaaacaatggatcaatggacaatattggagacaaacatttgagtgtaagcagccctctactgcccaactgaggaagaatcttggaaacagaaagccagaagaaccagtgggctctgcccagccaccattggtccatttttgctccgacatcacaaagaagcatcgtaggacatcatagatacctgttcacttacagatctgcctgagactgtctcctgtacctacagtactgaagttggcatttgtttgaaaaactactagagtccgatgctgctggaagattctactggaacttccaggagcttttaaacattgacatagtgcatttatctccactttggtgagaagtatacgaccttctagaactggatttagtgtacttgtggactacctgacctgtatcccgagaaccaaatacaggtcctctgcagaaatcatagacattgtggactccaaagccagctccccagcctggacccagaaaatcagcaatgtgaaatcacttgaccatcctaactttatcaagctgtttcacatggtcagacaagagaaaacacctaccagttgaaggataatgcctcggatggagagatactagaacaagtcattgaaggtcatcattgaactattgatggtcaattccagaagaaatcccaccatccacaaaatcatgatgtgcctcatgattagtgaaatgaggcatgtttattacctccttcctgtgtatttctgctttgaagttttgaagaggaccagaagccagagagtaggaatgtacaggctctttcaacaattttatggtaaatataatccccgtatcagcatctgactgaaacattctaagaccccaagtatatcaatgtgtccaatcctggtttcaaatggtggaggtaaatttaatatttaggggaatgcaccgttcccttgttttagaattagaacctctacaacgggaatctgggacatgtatattagtaggacgggagcaattataagtcaaacaacacagtgtattaggtgataaaattcttaagaacaggagaaaggggccaggcaagaaagctagagggtggcccattgagagctggtggaacaacgagatcaggtgataaatagcattcagtcacacaactaaacaaatgaggaagctttcttgggacaaaaaggccagtgcaaaaagcagcgcaagctttgtgcctgtgatacagaaaggcaagcacatacacctcttgcacactcacacctgtatacaccttattgattctgtgagactggtgtccagccagctctaagatctgtctgtctccctcatactccacgatactgaggttacagacacatgggcaccacgccttatttgcaggtgggttctgggcatttgaactcaggtcctcatgcttgcacaaaagtcatttcaccactgagccatctcttctgtccctctaatttgttgaccttagacaaaagcgtggcagcttaaaacaaaggttttgcataacacatttttacactagcaggctgtcaagatttttccagccttttgattatctaataggtagagaaaatgaagctgaccaagtctcctaagtggtaacgtagtataataataataataataataataataataataataataataataataatataataagggtgctgcttactgccttgttcactgtggcctgcttagcctgcttttctatagcgcaagggacccccagcccagcgatggccccacaatggtctgggccctcccacatcaatggctgatgaagaaaatgccttacaggtttgcctgcagcccagtcttacagaacattgttaaattgtggttctctcctctgagatgactccagtttgtgtcaaattgacataaaactagccagaacatgaatgttgaccaaaaaaaaattctgaagaataaactgatggtggaaatctgatttcttaacttccaatcataagtactaaatttttcatttttaattccgtattctttggacctaagcctgggagtctttcaagaagggatttataatatcttttagtagcttagtgttacactgagccacataaaattaatgtttttgagagttagaggcagcttaatatgcataatgtaaggtttatcctatcaccaaagtacaggtgacctggtctacattgaacaattgttgtacatggaaggctctgtgtaagacttaagatggtgttggaatattataaagacagaatcaggcatgaggagttcatggcgatgagagtgagtgacaagccactcgggtctcctgtctgagagttgagctgcttcctcacagatccgcgtacagaggatgcattgacctatgatgatgtacatgtgaacttcactcaagaagaatgggctttgctggatccttcacagaagagtctttacaaagatgtgatgcaggagacctataggaacctcactgctataggttacaattgggaagaccatactattgaagaacattgtcaaagtttcagaagacatggaaggcatgaaagatgtcatactggagagaagccctctgaaaatactcagtgtggtaaagcctttgcacaacatagtcatctccaaagacataagagcacacatactggagagaaactctatgaatgtaagccacgtgataaagcctttacatacgattctcagcttcaaactcttgaaaggattcatactggagaaaaaccctacaaatgtaatcaatgtggtaaagcctttgaacgtcgttgtactcttggaaggcataaactaatacatactggaagaaaatcctacaaatgcaatcagtgtggtaaagcctttgcacgacacagtcatctcaaaacgcatggaataacacatactggagagaaaccttacgaatgtgatcaatgtggtaaagcctttgcatatcatagttatctccaagtacataaaagaatacatactggagagaagccctatgaatgtaatcaatgtggtaaagcctttgtaggtcagaatgatcttaaaaggcatgaaagaattcatactggagagaaaccctacaaatgtaatgaatgtgataaaggctttggacatcaccgaaattttcgaatgcataaaatgatgcatgctggagaaaaaccctacaaatgcaatcaatgtggtaaagccttttcacaaaacagtcatctccaaacacataaaagcacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagctctgtgaatgtgagcaatgtggtaaagcctttgcatctcatagttatctcaaagtacataaaagaatacatactggagagaatctctatgaatgtaatcaatgtggtaaaacctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagttcataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgcatctcatagtcctctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagactttgtagttcagagtgatcttaaaagacataaaagaacacatactggtgagaaaccttacaaatgtaatgaatgtggtaaggcctttgtaggtcagaatgatcttaaaaaacataaaagaaaacatactggagagaaaccttacaaatgtaatgaatgtggtaaagcctttgtatggaatggtagtctccgaacacataaagtaatacatagtggagagaaaccttacaaatgtaatgaatgtggtaaagcctttgcatgtaacactagtctccgaacacataaagcaatacatactggagtgaaacctttcaaatgtaagcactgtggtaaagcctttgtaggtcagaatgaccttaaaaggcatgaaagaattcatactggagagaaactttacaaatgtaatgaatgtggtaaagcctttgtatttgattctagtctccgaaaatataaagcagtacatactggagtgaaaccttaagaatgtaagcaatgtggtaaagcctttgtatgtcagaattaccttaaaaagcatgaaagaattcatactggagagaaactttacaaatgtaatgaatgtggtaaagcctttgtatttgattctagtctccgaaaaca
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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