LOCUS       XM_039098285            4335 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus sperm motility kinase X-like
            (LOC103693496), transcript variant X2, mRNA.
ACCESSION   XM_039098285
VERSION     XM_039098285.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4335
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /country="USA: Wisconsin, Milwaukee, Medical College of
                     Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4335
                     /gene="LOC103693496"
                     /note="sperm motility kinase X-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     Proteins, and 92% coverage of the annotated genomic
                     feature by RNAseq alignments, including 58 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:103693496"
                     /db_xref="RGD:9090555"
     CDS             2359..4200
                     /gene="LOC103693496"
                     /codon_start=1
                     /product="zinc finger protein 431-like isoform X2"
                     /protein_id="XP_038954213.1"
                     /db_xref="GeneID:103693496"
                     /db_xref="RGD:9090555"
                     /translation="

MRMEFNAKDALTYDDVHVNFTQEEWALLDPSQKSLYKDVMQETYRNLTAIGYNWEDHTIEEHCQSFRRHGRHERCHTGEKPSENTQCGKAFAQHSHLQRHKSTHTGEKLYECKPRDKAFTYDSQLQTLERIHTGEKPYKCNQCGKAFERRCTLGRHKLIHTGRKSYKCNQCGKAFARHSHLKTHGITHTGEKPYECDQCGKAFAYHSYLQVHKRIHTGEKPYECNQCGKAFVGQNDLKRHERIHTGEKPYKCNECDKGFGHHRNFRMHKMMHAGEKPYKCNQCGKAFSQNSHLQTHKSTHTGEKPYKCDQCGKAFTSHSYLQVHKRIHTGEKLCECEQCGKAFASHSYLKVHKRIHTGENLYECNQCGKTFASHSYLQVHKRIHTGEKLYECDQCGKAFASHSYLQVHKRIHTGEKLYECDQCGKAFASHSPLQVHKRIHTGEKPYVCDQCGKDFVVQSDLKRHKRTHTGEKPYKCNECGKAFVGQNDLKKHKRKHTGEKPYKCNECGKAFVWNGSLRTHKVIHSGEKPYKCNECGKAFACNTSLRTHKAIHTGVKPFKCKHCGKAFVGQNDLKRHERIHTGEKLYKCNECGKAFVFDSSLRKYKAVHTGVKP"

     misc_feature    2389..2511
                     /gene="LOC103693496"
                     /note="KRAB box; Region: KRAB; pfam01352"
                     /db_xref="CDD:426216"
     misc_feature    <2572..3078
                     /gene="LOC103693496"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    2611..2754
                     /gene="LOC103693496"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2776..2838
                     /gene="LOC103693496"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2848..4155
                     /gene="LOC103693496"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    2860..2922
                     /gene="LOC103693496"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(2875..2877,2881..2883,2887..2889,2893..2898,
                     2905..2910,2917..2919,2959..2961,2965..2967,2977..2982,
                     2989..2994,3001..3003,3043..3045,3049..3051,3055..3057,
                     3061..3066,3073..3078,3085..3087)
                     /gene="LOC103693496"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    2944..3006
                     /gene="LOC103693496"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    3028..3090
                     /gene="LOC103693496"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    3112..3174
                     /gene="LOC103693496"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    3196..3258
                     /gene="LOC103693496"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(3211..3213,3217..3219,3223..3225,3229..3234,
                     3241..3246,3253..3255,3295..3297,3301..3303,3313..3318,
                     3325..3330,3337..3339,3379..3381,3385..3387,3391..3393,
                     3397..3402,3409..3414,3421..3423)
                     /gene="LOC103693496"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    3280..3342
                     /gene="LOC103693496"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    3364..3426
                     /gene="LOC103693496"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    3448..3510
                     /gene="LOC103693496"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(3463..3465,3469..3471,3475..3477,3481..3486,
                     3493..3498,3505..3507,3547..3549,3553..3555,3565..3570,
                     3577..3582,3589..3591,3631..3633,3637..3639,3643..3645,
                     3649..3654,3661..3666,3673..3675)
                     /gene="LOC103693496"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    3532..3594
                     /gene="LOC103693496"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    3616..3678
                     /gene="LOC103693496"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    3700..3762
                     /gene="LOC103693496"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(3715..3717,3721..3723,3727..3729,3733..3738,
                     3745..3750,3757..3759,3799..3801,3805..3807,3817..3822,
                     3829..3834,3841..3843,3883..3885,3889..3891,3895..3897,
                     3901..3906,3913..3918,3925..3927)
                     /gene="LOC103693496"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    3784..3846
                     /gene="LOC103693496"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    3868..3930
                     /gene="LOC103693496"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    3952..4014
                     /gene="LOC103693496"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    4036..4098
                     /gene="LOC103693496"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    4120..4182
                     /gene="LOC103693496"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      

atctggtatggctcagcccttagtacacagctttgctctcaaacgatgaaggtaaacatcatttttgaaggaagtgctcatgttcgtaagtaatgtataattgagtgggtgaaaaaatgatgaatcagggaaagatctgacagaataggatatgcccaactctaaagagaagagggaaaagaggcaatataagaggaagcagcatagagggtaagaggaggaggcagttttacctggagaattttacagagacaggcaggctaaagacagagaaagagaaaatgagtgagagaatgagaagagagcagtttactagagttggtttgaggccaagcatagcaattcagtcagaagtgaaagaagcaatttgaattggttagagtgaagagtaagagctagaagagcagagttgaccagccagagttcaaaaagaagaagaaagggtgattatttaacagttaagtctctgatgcccaaaacactcaagtgtccaactctactgagccccctcggtgtttgccccctgctgagccttgctgatgcatggaagctttagttcctaacaaaggaacatcttgatctttctgtttggcacctgggcagtaacacacagttcctgatttttgttcctgtttttgtcctgaggacataacctatttttccactgtgctttctggagttctccacccagtgaacttggggtgtatattctgtgaacctcagtaaagctttggcattttcttagcaaaaatgacactagtctgtgtcttttgttgaatcccccaggcctacgccccgtcattctagacctagataagattgtacagaagctataagcttcctaggcctagattatcagaaggaggaagtaagccttctaggtatttttacattcctatgtgatagtcactgtctacaaaaatagagcaagtactgtatgtatcacaatcttgctgtccctatctttatgattttgcttttctttgttcactatagcttcccttctttgcctttcatttaaacaatattgaattaagtttttatatgagggtagattctcatataatatatcctgaccactgtttccccaacctgcactcccaactacccctcacttctatcctttccccaaggtccatcccccccccacccatttcctcttcaaaaaggagcagacctaacagacaaaacaagatggaaaaagacaaggtgaaagccttcatgttggacaaggcaacctgataggaaaaatctcaagatcaagccaatgaatcagagttacacctgcttccactgttaggagtccctcaaagacaccaagctaacagccataacatatcagcagaggacctggtatagacccatgctgtctctatgctagccatttaagtttctgtaagattcctagaaatccagtcagtgttagtcatgggttccctctcatgtcaaaggcctcaagttaaaccaaacattggttggtcactcaaacaaatttgttaccctcatgccccagcacatcttaggaaggaccaattgtaggtgtgtatgggtgttgggggcggaggggagtttccaggtttctctttcttccttttatcctgtagagtaccttctctcctcaaagagactagaacacaggggtgaaggctccgagcctgtactagcttgacctctgcattcagtgaactgtgtggaatttgtccttaatgatcagtctctgctgtcagttatctgagagcaaaatttgtccttgcatcagcaaggattgttgaaggatctcaagggaccgccttggccaacagctcaacaatatgtaacttattagcaacatcgaaaccctgcctggtgtcaaaggatggtcagttcagactccatatcctccattactaggagttttcattagtgtcacctggtcatccaggaagttgtcattgtactggatttctacactaactcccaaataacccctaattccagctgtttcttcctgcattttactttcccctgcatccccctcaactgatcctccctactcctgttcccatcaaactctggtctactcacagaaattattctatttcccctgtagaaagagatctgtgcttcctccctagagtccaactctttaactaacccctctgggtttgattactatttacctaataggcaatattcacttctaagtaaatgcatgtcatgtttgtcattctgggtgtgatttctttagttgcatttacttccctgtaaattcatgatggcatctttataaacagctgagtgataaatgtaccacatttttggtgtaccccatagggctcaaagtgagtcttaactaccaggagatcccccaagtgaggcatgagaatggagtttaatgcaaaggatgcattgacctatgatgatgtacatgtgaacttcactcaagaagaatgggctttgctggatccttcacagaagagtctttacaaagatgtgatgcaggagacctataggaacctcactgctataggttacaattgggaagaccatactattgaagaacattgtcaaagtttcagaagacatggaaggcatgaaagatgtcatactggagagaagccctctgaaaatactcagtgtggtaaagcctttgcacaacatagtcatctccaaagacataagagcacacatactggagagaaactctatgaatgtaagccacgtgataaagcctttacatacgattctcagcttcaaactcttgaaaggattcatactggagaaaaaccctacaaatgtaatcaatgtggtaaagcctttgaacgtcgttgtactcttggaaggcataaactaatacatactggaagaaaatcctacaaatgcaatcagtgtggtaaagcctttgcacgacacagtcatctcaaaacgcatggaataacacatactggagagaaaccttacgaatgtgatcaatgtggtaaagcctttgcatatcatagttatctccaagtacataaaagaatacatactggagagaagccctatgaatgtaatcaatgtggtaaagcctttgtaggtcagaatgatcttaaaaggcatgaaagaattcatactggagagaaaccctacaaatgtaatgaatgtgataaaggctttggacatcaccgaaattttcgaatgcataaaatgatgcatgctggagaaaaaccctacaaatgcaatcaatgtggtaaagccttttcacaaaacagtcatctccaaacacataaaagcacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagctctgtgaatgtgagcaatgtggtaaagcctttgcatctcatagttatctcaaagtacataaaagaatacatactggagagaatctctatgaatgtaatcaatgtggtaaaacctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagttcataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgcatctcatagtcctctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagactttgtagttcagagtgatcttaaaagacataaaagaacacatactggtgagaaaccttacaaatgtaatgaatgtggtaaggcctttgtaggtcagaatgatcttaaaaaacataaaagaaaacatactggagagaaaccttacaaatgtaatgaatgtggtaaagcctttgtatggaatggtagtctccgaacacataaagtaatacatagtggagagaaaccttacaaatgtaatgaatgtggtaaagcctttgcatgtaacactagtctccgaacacataaagcaatacatactggagtgaaacctttcaaatgtaagcactgtggtaaagcctttgtaggtcagaatgaccttaaaaggcatgaaagaattcatactggagagaaactttacaaatgtaatgaatgtggtaaagcctttgtatttgattctagtctccgaaaatataaagcagtacatactggagtgaaaccttaagaatgtaagcaatgtggtaaagcctttgtatgtcagaattaccttaaaaagcatgaaagaattcatactggagagaaactttacaaatgtaatgaatgtggtaaagcctttgtatttgattctagtctccgaaaa

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