2024-04-27 16:25:46, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039097014 12723 bp mRNA linear ROD 11-JUN-2023 DEFINITION PREDICTED: Rattus norvegicus ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 (St8sia5), transcript variant X6, mRNA. ACCESSION XM_039097014 VERSION XM_039097014.1 DBLINK BioProject: PRJNA677964 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051353.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_015227675.2-RS_2023_06 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 06/06/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..12723 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /db_xref="taxon:10116" /chromosome="18" /sex="male" /tissue_type="kidney" /country="USA: Wisconsin, Milwaukee, Medical College of Wisconsin" /collection_date="2019-03-08" /collected_by="Rebecca Schilling" gene 1..12723 /gene="St8sia5" /gene_synonym="SATV; SIAT8-E; SIAT8E; ST8SiaV" /note="ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:364901" /db_xref="RGD:1302934" CDS 6527..7492 /gene="St8sia5" /gene_synonym="SATV; SIAT8-E; SIAT8E; ST8SiaV" /codon_start=1 /product="alpha-2,8-sialyltransferase 8E isoform X5" /protein_id="XP_038952942.1" /db_xref="GeneID:364901" /db_xref="RGD:1302934" /translation="
MDSGFFYTRDSVCPLQQPLRVKQSELFERWKSLQICKWAMDASEASLFKSTLSRCCNAPNFLFTTQKNTPVETNLRYEVESSGLYHIDQEIFKMFPKEMPYYRSQFKKCAVVGNGGILKNSGCGKEINSADFVFRCNLPPISGIYTTDVGEKTDVVTVNPSIIIDRFHKLEKWRRPFFSVLQRYENASVLLPAFYNVRNTLVSFRVKYMLDDFQSRQPVYFFHPQYLSSVSRYWLSLGVRARRISTGLILVTAALELCEEVHLFGFWAFPMNPSGFFITHHYYDNVKPKPGFHAMPSEIFTFLRMHSRGILRVHTGTCNCC"
misc_feature 6713..7456 /gene="St8sia5" /gene_synonym="SATV; SIAT8-E; SIAT8E; ST8SiaV" /note="Glycosyltransferase family 29 (sialyltransferase); Region: Glyco_transf_29; pfam00777" /db_xref="CDD:425864" ORIGIN
ggccaattggactgggctctttaatgccagcggcagcctaacagagcagaacatcagtgactccagctccagggtttagcgtgaaagtcagaagcactgcccagagtgggtgagacttggcttggatctgaggaccctgcctacagcttgccgtcaccggggtgcagctgtatgccagccatttatttgctgagcacattctgtgaattactgctgggtaaattctcaccctcacacctttgcattgggcgcaattacgatctcacagcacagctgaagggactgagtcacctccaggtggtatgcagtagagagacagcacgccagggtaatgttgactctgaggtcccagctctggtgggagacgtgagagggattcttcacctgggctgtgggctggtcacccatgatgatgagcgctgtttaaatgtccacccatacatctctccccgcccttgactgttggaccaaacctgggtttaagaagactgcttctctgcagatttcccaaggaagatacatatagagaggtggcctattttaaccctaatatgggaaaactcacttactttaggctcacttactctctcccctacctctcccacttttttctgaaggtgggtgcagtgaactttattgatggtattgaaagagtagggctccctgggcccctcctgttattctgggggtctgggatggtaactgtgagggagatgctcagtgttgagggatgagttgggattgggattcctcagtgccctacagcctttctcttgttctcatgtcctcgctggggtgggtggtccagggattcttactccttggaggccacgtaggccgtgaggtccaccactctgctgctgtagccgtattcattgtcataccaggaaatgagctttacaaaggtgtcattgagagcaatgccagtcccagcatcgaaggtggaagagtgggagctgctgttgaagttgcaggagacaacctgatcctcagtgtaactcaagatgccctttagtgggccctcagatgtctgcttcgctatcttcttgatgtcttcatacttggcagccttcttcaggtgacagatccattccatgacagatatactgagggtaggaacatggaagaccatgtcaaatgagcttcccattcacctctgggatgaccttgcccatagccttggcagcaccagtggatacatggatgatgttctgggctactccatggccatcacaccacagttttccagaggggtcgtccacagtcttctgagtggcagtgatggcatggactatgatcttgggcccttccatgatggcaaagttgtcatggatgacctcggccaggggggcagttggtggtacagggagcactgtgacagtcttgagtgagttgtcatacatttcgtggttcacatccatcgcaagcactggggcatcatgggcagaatgggcagagatgctaacctttttggccccacccttcaagtggctccaagatagtgaagatactggtagactccatgcatactcggcaccagcaccaccccatttgatgttagcaggatgtcactcctggaagatgggtttggccttcccaatgacggcattctcagccttgactgtgctgttgaacttgccatgggtagagccacactggagcatgtagaccaggtaggccatgtagttgaggtcagtgatgcagtcagattcactttgccaggtaagaaggcagcccttctaatcagttgcctgatatggccaaatcctttcaccccgacctttaccatgtgtctaagggccaaggctggcactgcacaagaagacgtggctgtctctgaaacaggaaggagcagagagcctctttcccacttctgttctctcttcactcttcaggagggggatttttttttcctgatcccttgacctctgaggttaatattttccctgtctcagcctgcacctgggggttcacaatttcagaacaatcccgtttccaaggtggaacttgaggtgtaacagtgggcttgaacacttcccaatagcctggcccgcatgaccacccttccattctgcctcctgtaagagtgcctccccctcagggtagtttgagatgcgggctggctcagcgtgaacctttcagatgaattttcacttctttggaaaaataaagtgggcacaaaagagagacagatctcttgggttgcatccaaatgagaggaatttggagagtcggctttggcagaatcgctcctggctgggtgctggggaaacacagcaaagcaaatatggtgtcttcccccattcatcccacgtacctgatgtaggcctcccacggcccgacagtatcaggcttcaagcagatgaggttggtggtggaagtggaggctatgccaggaggctcttaagatagtgttgctttatgggcttccaacctctgagatttggggatcataatgagtctcagcacagtctcctctcttatggggcatctacactcacgagttcactctcagaaagtttccttccctctgattctgctcctgctcctgtaagttggcattaattcaactgttcagcagacagaaaggaggtcagtcacgcagttggagcatgccaaggaccccaaggttaaaataccccacacaggtaagctcctcacagcctcacgaaggtgttactgaggccccctgaagagacattcccaacagggccagatgccagctttgcccctgattcagggcattgtcttggagaggcagcactgcatgtttgggccatgtctccttaaaactgaagggaagccctagtgaactttctagcttcactgttttgattgacttttttctttttaaatcactacttttggaggtcacagagccaagcaatgcattcccagtctcccactggctttgctgatgcccctgagtgtgagtcttgtcagtactggttgtctaagttacttctcagggactctaagactgcttttgtcaaagctacaggctcactactaaagcccacataggtacccagtgactgatctcttggtgtcagagggccaaacccacccactatttcttaagccttcctcccataaggggccacgaggctggatcacacacaggcagatcatggctcatttcacccagtcacctctccctgcacctcaggccactcctccccataaccaccgtgtgaacatactctccattacaaaactcacagtttcagtggttatcctattctgcagcaggagaaacagggctggctcagtaaccacccctctgctgaagcagcttccaccatagcagccagctcccaggcaccctgacctgtcccctctcacacccctaccctctcaccttcctcgtggttccgcccttcttgcctgctccactgtctctgagcacttcacaccaggacttggcaaaggtgggaggacggagagaggtggagaacggaaggaaaaggaggtgggggctgggccaggaagccagtgtatcaatttgatatttgataatccaatcaggggtacttctagtgcccacctccccacccccacctccaaattaaaggctatagattctcctagaagctccacacactctcctagtttggtgggcaccaagactgtcactggagagtaagtgatggaggctcacaaagatggcaggaggccaccctccatcgagggctgtcctgtgagaagtccttcctcatactaagtgtgaccctttttcctgtgctcactaggagcttctacttgctttttattgcttcacagagcactaacatccatccgtcctctctgcagctgtccctgatgtgttggaaagcatcaatacttccccttcttcctggccctggaacccagtctccaacattccctcccctagctctactattcctcaagacttcagccattacccaccccaccccagtcttacattaacacatgcccacgaagcgttatctgctattgtcaaggtcactgtgacctctaagtggtcatatcagtgccaccttcccttcttccttgaccccactggcactgggtggagctgtcccttgtgtcctgaaaaggcccttggtccctgggctccacatcctggtttgtcctcgttcctgcataccgttcttctcagtctaacctcaggcctgtctttccccctccccacctctaagagctcatggggtgtctctgtccatcgactctggatcgtgtgttttgtcctgtgcatcccatttgtacctgactcttacctgctgcctctcaccctctgatggctgagggtcacagagaacactccttggccattctccttaccattcatacccaagtcattgggtggctccatcacaccactccgtagactttgttcatccaaatactgaatcttagcactcccctcagggtccatctctgcactactgctcaggtttctctcccctaccccttgctttcaacctcttggtgccatgcgccatctccttacactgctgagtttcttctcctctcggaacccccttctcagccagtgtgaacttttaaatcaaattatgttgtcccctgcctaaatgcttttcaaactcctgacccatgacccagcccttctgatgctaccaccctgttccagtcatcctggctgccgtcataccgcagctggctagctcttgctgtataaactggtcgcacatctgcccagggctgcatccctccctctgctcactgtctggagacaccttcactaacctggtcgtctcagagtccctctagtttcctacctgcattgcttctgcagcactcattctgctatgttgagaagcacctcgagggaggagccttggcctggctagttgatcactactaaggtagaaatagcctgacacgcaagggaggctcaacaagcattcagtgaggaagagataagccttcctgacccctgaggggtacaggcaggccacgaggaatcatgtttaagtcatttctaggggaggtgg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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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