ver.2
Home
|
Help
|
Advanced search
Previous release (v1)
2024-04-23 17:51:25, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039084924 2548 bp mRNA linear ROD 11-JUN-2023
DEFINITION PREDICTED: Rattus norvegicus zinc finger protein 431-like
(LOC120094816), transcript variant X1, mRNA.
ACCESSION XM_039084924
VERSION XM_039084924.1
DBLINK BioProject: PRJNA677964
KEYWORDS RefSeq.
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_051344.1) annotated using gene prediction method: Gnomon,
supported by EST evidence.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Updated annotation
Annotation Name :: GCF_015227675.2-RS_2023_06
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.1
Annotation Method :: Best-placed RefSeq; Gnomon;
cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 06/06/2023
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..2548
/organism="Rattus norvegicus"
/mol_type="mRNA"
/strain="BN/NHsdMcwi"
/db_xref="taxon:10116"
/chromosome="9"
/sex="male"
/tissue_type="kidney"
/country="USA: Wisconsin, Milwaukee, Medical College of
Wisconsin"
/collection_date="2019-03-08"
/collected_by="Rebecca Schilling"
gene 1..2548
/gene="LOC120094816"
/note="zinc finger protein 431-like; Derived by automated
computational analysis using gene prediction method:
Gnomon. Supporting evidence includes similarity to: 2
ESTs, 1 long SRA read, 7 Proteins, and 80% coverage of the
annotated genomic feature by RNAseq alignments, including
81 samples with support for all annotated introns"
/db_xref="GeneID:120094816"
/db_xref="RGD:40991655"
CDS 295..2190
/gene="LOC120094816"
/codon_start=1
/product="zinc finger protein 431-like isoform X1"
/protein_id="XP_038940852.1"
/db_xref="GeneID:120094816"
/db_xref="RGD:40991655"
/translation="
MDVLTYDDVHVNFTREEWALLDPSQKSLYKDVMQETYRNLTAIGYNWEDHTIEEHCQSFRRHGRHERCHTGEKPSENTQCCKAFAQHSPLQRHKSTHTGEKLYECKSRDKAFTYYSQLQTLERIHAGEKPYKCNQCGKAFTSHSSLQVHERIHTGEKPYKCNQCGKAFAQLSHLKTHGITHSGEKPYECEQCGKAFTSHSYLQVYKRIHTGEKLYECDQCGKAFVLHNALKRHKRIHTGEKLYECDQCGKAFAYHSYLQVHKRIHTGEKPYKCNQCGKAFAQLSHLKTHGITHTGEKSYECNQCGKAFTSHSYLQVHKRIHTGEKLYECDQCGKAFVLHSTLKRHKRIHTGEKLYECDQCGKAFTSHSYLQVHKRIHTGEKLYECDQCGKAFVLHSALKRHKRIHTGEKLYECDQCGKAFAYHSYLQVHKRIHTGEKPYVCDRCDKAFAYQSYLQVHKRIHTGEKPYVCDRCDKAFAYHSYLQVHKRIHTRENLYECDQCGKAFTSHSSLQVHKRIHTGEKPYVCDQCGKDFVVPSDLKRHKRTHTEEKLYKCNECGKAFVCNASLRKHKATHTGVKPFDCKQCGKAFVGQNDLRRHERIHTGEKPYECNECGKAFSQSSQLQLHKRTHTY"
misc_feature 301..426
/gene="LOC120094816"
/note="KRAB box; Region: KRAB; pfam01352"
/db_xref="CDD:426216"
misc_feature 526..585
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 607..669
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(607..609,616..618,655..657,667..669)
/gene="LOC120094816"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature <619..1167
/gene="LOC120094816"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 691..753
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(691..693,700..702,739..741,751..753)
/gene="LOC120094816"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(706..708,712..714,718..720,724..729,736..741,
748..750,790..792,796..798,808..813,820..825,832..834,
874..876,880..882,886..888,892..897,904..909,916..918)
/gene="LOC120094816"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 775..837
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 859..921
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 931..2154
/gene="LOC120094816"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 943..1005
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(943..945,952..954,991..993,1003..1005)
/gene="LOC120094816"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature 1027..1089
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1027..1029,1036..1038,1075..1077,1087..1089)
/gene="LOC120094816"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(1042..1044,1048..1050,1054..1056,1060..1065,
1072..1077,1084..1086,1126..1128,1132..1134,1144..1149,
1156..1161,1168..1170,1210..1212,1216..1218,1222..1224,
1228..1233,1240..1245,1252..1254)
/gene="LOC120094816"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 1111..1173
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1195..1257
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1279..1341
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1363..1425
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1447..1509
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1531..1593
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1615..1677
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1699..1761
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1783..1845
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1783..1785,1792..1794,1831..1833,1843..1845)
/gene="LOC120094816"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature 1867..1929
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1951..2013
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1951..1953,1960..1962,1999..2001,2011..2013)
/gene="LOC120094816"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(1966..1968,1972..1974,1978..1980,1984..1989,
1996..2001,2008..2010,2050..2052,2056..2058,2068..2073,
2080..2085,2092..2094,2134..2136,2140..2142,2146..2148,
2152..2157,2164..2169,2176..2178)
/gene="LOC120094816"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 2035..2097
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2119..2181
/gene="LOC120094816"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
ORIGIN
gtagatctggaaaaggtctggtcccaggcttgatgctagggccgagaactgtgtacctaccctgtaccttcagctcactgtaacccttaaggaggtgctcaagtcactcaagactactggccaattggagtcttcaatgcacctgccaatcagaagagaaggcgggcttttccgggttcctaggtgtaggatttgtttagtagttaagtagtcttaactggtcctggctgctgtgctctctgttctgcctttggattctctgaggcatgttcaggcaagctccaaagttgcgacatggatgtattgacctatgatgatgtacatgtgaacttcactcgagaagaatgggctttgctggatccttcacagaagagtctctacaaagatgtgatgcaggagacctacaggaacctcactgctataggttacaattgggaagaccatactattgaagaacattgtcaaagtttcagaagacatggaaggcatgaaagatgtcatactggagagaaaccctctgaaaatactcagtgttgtaaagcctttgcacaacatagtcctctccaaagacataaaagcacacatactggagagaaactctatgaatgtaagtcacgtgataaagcctttacatactattctcagcttcaaactcttgaaagaattcatgctggagaaaaaccctacaaatgcaatcaatgtggtaaagcctttacatctcatagttctctccaagtacatgaaagaatacatactggagagaaaccctacaaatgcaatcaatgtggtaaagcctttgcacaactcagtcatctcaaaacgcatggaataacacattctggagagaaaccttacgaatgtgaacagtgtggtaaagcctttacatctcatagttatctccaagtatataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgtacttcacaatgctcttaaaagacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgcatatcatagttatctccaagtacataaaagaatacatactggagagaaaccctacaaatgcaatcaatgtggtaaagcctttgcacaactcagtcatctcaaaacgcatggaataacacatactggagagaaatcctacgaatgcaatcagtgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgtacttcacagtactcttaaaagacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgtacttcacagtgctcttaaaagacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttgcatatcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcggtgtgataaagcctttgcatatcagagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcggtgtgataaagcctttgcatatcatagttatctccaagtacataaaagaatacatactcgagagaatctctatgaatgtgatcaatgtggtaaagcctttacatctcatagttctctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagacttcgtagttccgagtgatcttaaaagacataaaagaacacatactgaagagaaactttacaaatgtaatgaatgtggtaaggcctttgtctgtaatgctagtctccgaaaacataaagcaacacatactggagtgaaacctttcgattgtaagcaatgtggtaaagcctttgtaggtcagaatgaccttagaaggcatgaaagaattcatactggagagaaaccttacgaatgtaatgaatgtggtaaagccttttcacaatcaagccaactccaactacataaaagaacacatacatactaaagagtaaccctatgaatgtaaccaatgtagtaaagcctttactgtgatcttcaaaggtatggtggtttaaatatacttggcccatggcaagtggcagtgttaggaggtatggcctttttggagtagatgtgacctttgaggaagtatgtcaatgtggaggggggatgggctttcagacctcatgcttaaactctacccagggcagaagagtcttctggctgccttctgatcaagatgtagaactctatcctccagcaccatatctgcttggacactgacatttcttccaccttgatcatagactgaacctctgaatctgtatacctcccctccccacaattaaatgtcctttctaaga
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]