LOCUS       XM_039084914            4677 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus sperm motility kinase X-like
            (LOC100911813), transcript variant X2, mRNA.
ACCESSION   XM_039084914
VERSION     XM_039084914.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4677
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /country="USA: Wisconsin, Milwaukee, Medical College of
                     Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4677
                     /gene="LOC100911813"
                     /note="sperm motility kinase X-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 15
                     ESTs, 3 long SRA reads, 4 Proteins, and 92% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 117 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:100911813"
                     /db_xref="RGD:6490489"
     CDS             1131..3266
                     /gene="LOC100911813"
                     /codon_start=1
                     /product="zinc finger protein 431 isoform X2"
                     /protein_id="XP_038940842.1"
                     /db_xref="GeneID:100911813"
                     /db_xref="RGD:6490489"
                     /translation="

MLETYRNLTAIGYNWEDHTIDEHCQSFRRHGRHERCHPGEKPSENTQCGKAFAQQSHLQRHKSTHTGEKLYECKPRDKAFTYDSQLQTLERIHTGEKPYKCNQCGKAFERRCNLGRHKLIHTGRKSYKYNQCGKDFAGLSHLKTHGITHTGGKPYKCDQCGKAFAYHSSLQVHKRIHTGEKPYVCDQCGKAFAQLGHLQVHGITHTGEKPYKCDQCGKAFAHHSYLQVHKRIHTGEKLCECDQCGKAFLSHSYLQVHKRIHTGENLYECDQCGKAFTSHSYLQVHKRIHTGEKLYECDQCGKAFTSHSYLQVHKRIHTGEKPYVCDQCGKAFARLSYLKTHGITHTGEKPYKCDQCGKAFEHRCNLGSHKLIHTGEKPYKCDQCGKAFTSHSYLQVHKRIHTGEKLCECDQCGKAFSSHSYLQVHKRIHTGENLYECDQCGKAFASHSYLQVHKRIHTGENLYECDQCSKAFASHSYLQVHKRIHTGEKPYVCDWCNKAFAYHSYLQVHKRIHTGEKPYVCDQCGKDFVVPSELKRHKRIHTGEKPYKCNECGKAFVGQNDLKKHRRTHTGEKPYKCNECGKAFVFNFNLRAHKVIHTGEKPYKCSECGKAFACNTSLRTHKAIHTGVKPFECKQCGKAFACNTSLQTHRAIHTGVKPFECKQCGKAFVGQNDLKRHERIHTGEKPYECNECGKAFSQSSQLQLHKRTHTY"

     misc_feature    <1251..1739
                     /gene="LOC100911813"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    1266..1325
                     /gene="LOC100911813"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1347..1409
                     /gene="LOC100911813"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1431..1493
                     /gene="LOC100911813"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1431..1433,1440..1442,1479..1481,1491..1493)
                     /gene="LOC100911813"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1518..1577
                     /gene="LOC100911813"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1599..1661
                     /gene="LOC100911813"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1599..1601,1608..1610,1647..1649,1659..1661)
                     /gene="LOC100911813"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(1614..1616,1620..1622,1626..1628,1632..1637,
                     1644..1649,1656..1658,1698..1700,1704..1706,1716..1721,
                     1728..1733,1740..1742,1782..1784,1788..1790,1794..1796,
                     1800..1805,1812..1817,1824..1826)
                     /gene="LOC100911813"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1683..1745
                     /gene="LOC100911813"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1755..2999
                     /gene="LOC100911813"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    1767..1829
                     /gene="LOC100911813"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1851..1913
                     /gene="LOC100911813"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1851..1853,1860..1862,1899..1901,1911..1913)
                     /gene="LOC100911813"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1935..1997
                     /gene="LOC100911813"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1935..1937,1944..1946,1983..1985,1995..1997)
                     /gene="LOC100911813"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(1950..1952,1956..1958,1962..1964,1968..1973,
                     1980..1985,1992..1994,2034..2036,2040..2042,2052..2057,
                     2064..2069,2076..2078,2118..2120,2124..2126,2130..2132,
                     2136..2141,2148..2153,2160..2162)
                     /gene="LOC100911813"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    2019..2081
                     /gene="LOC100911813"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2103..2165
                     /gene="LOC100911813"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2187..2249
                     /gene="LOC100911813"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2271..2333
                     /gene="LOC100911813"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2355..2417
                     /gene="LOC100911813"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2439..2501
                     /gene="LOC100911813"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(2439..2441,2448..2450,2487..2489,2499..2501)
                     /gene="LOC100911813"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    2523..2585
                     /gene="LOC100911813"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(2523..2525,2532..2534,2571..2573,2583..2585)
                     /gene="LOC100911813"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(2538..2540,2544..2546,2550..2552,2556..2561,
                     2568..2573,2580..2582,2622..2624,2628..2630,2640..2645,
                     2652..2657,2664..2666,2706..2708,2712..2714,2718..2720,
                     2724..2729,2736..2741,2748..2750)
                     /gene="LOC100911813"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    2607..2669
                     /gene="LOC100911813"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2691..2753
                     /gene="LOC100911813"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2775..2837
                     /gene="LOC100911813"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2859..2921
                     /gene="LOC100911813"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2943..3005
                     /gene="LOC100911813"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    2979..3056
                     /gene="LOC100911813"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:433230"
     misc_feature    3027..3089
                     /gene="LOC100911813"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(3027..3029,3036..3038,3075..3077,3087..3089)
                     /gene="LOC100911813"
                     /note="Zn binding site [ion binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    order(3042..3044,3048..3050,3054..3056,3060..3065,
                     3072..3077,3084..3086,3126..3128,3132..3134,3144..3149,
                     3156..3161,3168..3170,3210..3212,3216..3218,3222..3224,
                     3228..3233,3240..3245,3252..3254)
                     /gene="LOC100911813"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    3099..>3263
                     /gene="LOC100911813"
                     /note="FOG: Zn-finger [General function prediction only];
                     Region: COG5048"
                     /db_xref="CDD:227381"
     misc_feature    3111..3173
                     /gene="LOC100911813"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    3147..3224
                     /gene="LOC100911813"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:433230"
     misc_feature    3195..3257
                     /gene="LOC100911813"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
ORIGIN      

gggtgggggagggagagaggcagagaaacagaaacacaaagagtacaaaatttctggattatataggaagagcttctggggaaaggaaaactcggtccctgcactggaaagttcaaggtacaaggtggggtatcccagacaggccctgatatgggtggggactgaggagtgctgggagaacctggaggcccagacagctttggtgtgttaaatatatgaaggtcagctgattgtagggtctgaatcccaacagccacaaaacaaaactcttgtttcctcaaatttctctttaattgttaatatcttgggcacccttccacttgtgggacagattaaaaactccactgcaagttgagcatgggggttatgcaagctgcataccttgattccaggaggaggaagggtaagagcctactgagtgttgtgagctgagttcaggttgaagtgaggaccgggtgagctcagggtcactgcccacgaaagggaggagcaagcggctgggcagtggtaggtggtgtggtgggtccttccgggggctgggcggggagacagatgagaacgctattggaggacaggcacaagtgctactgaaatgcaaatccctgtagatctggaaaaggtctggcttcaggcttgatgcttgggccggcaactgtgtacctacactgtacgttcagcccctcctacccttacggaggtgctcaagtcactcaaactactggccaatcggagtcttcaatggacctgccaatcaaaagggaaggcgggcttttccgggtgcctaggtgtaggattcggttagtagttaagcagtcttaactggtcctggctgctgtgctctctgtcctgccgttggattctctgaggcatgttcaggcaagctccaaagttgcgacatggttcaaagtgagtcttaactaccaggagatcccccaagtgaggcatgagaatggagtttaatgcaaaggtggcatgtattcatgacattaatactgcctggctatattgcctgagctttctgagtcattggactgcaggatgcattgacctatgatgatgtacatgtgaacttcactcgagaagaatgggctttgctggatccttcacagaagagtctctacaaagatgtgatgctggagacctacaggaacctcactgctataggttacaattgggaagaccatactattgatgagcattgtcaaagtttcagaagacatggaaggcatgaaagatgtcatcctggagagaaaccctctgaaaatactcagtgtggtaaagcctttgcacaacagagtcatctccaaagacataaaagcacacatactggagagaaactctatgaatgtaagccacgtgataaagcctttacatacgattctcagcttcaaactcttgaaagaattcatactggagaaaaaccctacaaatgtaatcaatgtggtaaagcctttgaacgtcgttgtaatcttggaaggcataaactaatacatactggaagaaaatcctacaaatacaatcaatgtggtaaagactttgcaggactcagtcatctcaaaacacatggaataacacatactggagggaaaccttacaaatgtgatcaatgtggtaaagcctttgcatatcatagttctctccaagtacataaaagaatacatactggagagaagccctatgtatgtgaccaatgtggtaaagcctttgcacaactcggtcatctccaagttcatggaataacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagcctttgcacatcatagttatctccaagtacataaaagaatacatactggagagaagctctgtgaatgtgatcaatgtggtaaagcctttttatctcatagttatctccaagtacataaaagaatacatactggagagaatctctatgaatgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagcctttgctcgactcagttatctcaaaacgcatggaataacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagcctttgaacatcgttgtaatcttggaagtcataaattaatacatactggagagaaaccttacaaatgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagctctgtgaatgtgatcaatgtggtaaagccttttcatctcatagttatctccaagtacataaaagaatacatactggagagaatctctatgaatgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaatctctatgaatgtgatcagtgtagtaaagcctttgcatctcatagttatctccaagtacataaaagaatacacactggagagaagccctatgtatgtgattggtgtaataaagcctttgcatatcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagactttgtagttccgagcgagcttaaaagacataaaagaatacatactggagagaaaccttacaaatgtaatgaatgtggtaaggcctttgtaggtcagaatgatcttaaaaaacatagaagaacacatactggagagaaaccttacaaatgtaatgaatgtggtaaggcctttgtattcaattttaatctccgagcacataaagtaatacatactggagagaaaccttacaaatgtagtgaatgtggtaaagcctttgcatgtaacactagtctccgaacacataaagcaatacatactggagtgaaacctttcgaatgtaagcaatgtggtaaagcctttgcatgtaacactagtctccaaacacatagagcaatacatactggagtgaaacctttcgaatgtaagcaatgtggtaaagcctttgtaggtcagaatgaccttaaaaggcatgaaagaattcatactggagagaaaccttacgaatgtaatgaatgtggtaaagccttttcacaatcaagccaactccaactacataaaagaacacatacatactaaagagtaaccctatgaatgtaaccaatgcagtaaagcctttactgtgatattcaaaggtatggtggttaaaatatacttggcccatggcaagtggcattgttatgaggtatggcccttttggagtagatgtggcctttgaggatgtgtgtcactgtgggggagggggtggtggtggttggctttgagaccccatgcttaaactctacccagggcagaagagtcttctggctgccttctgatcaagatgtagaactctctccagcaccatgtctgcttggacactgagattccttccaccttgataatagactgaacctctgaatctgtataccctccccccaattaaatgtcctttctaagagttgccttggtcatggtattttttcacagcattaaaacccaaattaagacaaacagcataaaatataccacactagagaaaaactgtgaatgtactaaatatggtcaagcctttgcacatttgtataactctcactataacaaaagtattcatacttccattcactgaaaccctgggctctgtggcaaagtctgtgtcttgaaatctgcataaatacctaacaattcaaaaacatggtcaaagtaaatgccaggagtctattggaaacaagctgagttagaagggtagggattatgtttagggtggttgggtgtgcctttagtgctagtgaaaaagccgcgccaaaatttggggagcctctctagtcgcgggatggagttccccaggaaacgcgagtagcccgtcttgatgtaacagcaagaggtagcatttattaatgagatctcgggctgaaacgtgtgtcacgcaggagacagaggaatcgaccccaagactcgaaatttaaggctttttataggggaaggcaaggggattcagcgtggttatctgcaagggaaatgggtacaaggtctcatctgtaagcagtccgtgcgggctggagtgttctcaatgtaggagagcgtcttatctttatctgtagagcagggagttgtccgtcaggatggcccccgactcagctgagatggtggctgctagttcctggaacaatcccttgaccttgtttttaggcttgtcggggcacatctcaggcctgctctgtcctgtccccttatctgctgttcttttgcagtttttatgaagtttttattttaacttcattcccctctactttttgtgagtagttctaatcttagaactacatgatgagttcagcatctagaggctctttaccccgtacagcctgatactgttgtcttaacatgaggacatgtacagcactaatccgttccctgacaaaagttaaaaggcgattaatggggctggggatttagctcagtggtagagcgcttacctaggaagcgcaaggccctgggtttggtccccagctcc

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