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Previous release (v1)
2024-04-27 01:32:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039084913 4606 bp mRNA linear ROD 11-JUN-2023
DEFINITION PREDICTED: Rattus norvegicus sperm motility kinase X-like
(LOC100911813), transcript variant X1, mRNA.
ACCESSION XM_039084913
VERSION XM_039084913.1
DBLINK BioProject: PRJNA677964
KEYWORDS RefSeq.
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_051344.1) annotated using gene prediction method: Gnomon,
supported by EST evidence.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI RefSeq
Annotation Status :: Updated annotation
Annotation Name :: GCF_015227675.2-RS_2023_06
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 10.1
Annotation Method :: Best-placed RefSeq; Gnomon;
cmsearch; tRNAscan-SE
Features Annotated :: Gene; mRNA; CDS; ncRNA
Annotation Date :: 06/06/2023
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..4606
/organism="Rattus norvegicus"
/mol_type="mRNA"
/strain="BN/NHsdMcwi"
/db_xref="taxon:10116"
/chromosome="9"
/sex="male"
/tissue_type="kidney"
/country="USA: Wisconsin, Milwaukee, Medical College of
Wisconsin"
/collection_date="2019-03-08"
/collected_by="Rebecca Schilling"
gene 1..4606
/gene="LOC100911813"
/note="sperm motility kinase X-like; Derived by automated
computational analysis using gene prediction method:
Gnomon. Supporting evidence includes similarity to: 15
ESTs, 6 long SRA reads, 4 Proteins, and 92% coverage of
the annotated genomic feature by RNAseq alignments,
including 218 samples with support for all annotated
introns"
/db_xref="GeneID:100911813"
/db_xref="RGD:6490489"
CDS 943..3195
/gene="LOC100911813"
/codon_start=1
/product="zinc finger protein 431 isoform X1"
/protein_id="XP_038940841.1"
/db_xref="GeneID:100911813"
/db_xref="RGD:6490489"
/translation="
MRMEFNAKDALTYDDVHVNFTREEWALLDPSQKSLYKDVMLETYRNLTAIGYNWEDHTIDEHCQSFRRHGRHERCHPGEKPSENTQCGKAFAQQSHLQRHKSTHTGEKLYECKPRDKAFTYDSQLQTLERIHTGEKPYKCNQCGKAFERRCNLGRHKLIHTGRKSYKYNQCGKDFAGLSHLKTHGITHTGGKPYKCDQCGKAFAYHSSLQVHKRIHTGEKPYVCDQCGKAFAQLGHLQVHGITHTGEKPYKCDQCGKAFAHHSYLQVHKRIHTGEKLCECDQCGKAFLSHSYLQVHKRIHTGENLYECDQCGKAFTSHSYLQVHKRIHTGEKLYECDQCGKAFTSHSYLQVHKRIHTGEKPYVCDQCGKAFARLSYLKTHGITHTGEKPYKCDQCGKAFEHRCNLGSHKLIHTGEKPYKCDQCGKAFTSHSYLQVHKRIHTGEKLCECDQCGKAFSSHSYLQVHKRIHTGENLYECDQCGKAFASHSYLQVHKRIHTGENLYECDQCSKAFASHSYLQVHKRIHTGEKPYVCDWCNKAFAYHSYLQVHKRIHTGEKPYVCDQCGKDFVVPSELKRHKRIHTGEKPYKCNECGKAFVGQNDLKKHRRTHTGEKPYKCNECGKAFVFNFNLRAHKVIHTGEKPYKCSECGKAFACNTSLRTHKAIHTGVKPFECKQCGKAFACNTSLQTHRAIHTGVKPFECKQCGKAFVGQNDLKRHERIHTGEKPYECNECGKAFSQSSQLQLHKRTHTY"
misc_feature 973..1095
/gene="LOC100911813"
/note="KRAB box; Region: KRAB; pfam01352"
/db_xref="CDD:426216"
misc_feature <1180..1668
/gene="LOC100911813"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 1195..1254
/gene="LOC100911813"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1276..1338
/gene="LOC100911813"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1360..1422
/gene="LOC100911813"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1360..1362,1369..1371,1408..1410,1420..1422)
/gene="LOC100911813"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature 1447..1506
/gene="LOC100911813"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1528..1590
/gene="LOC100911813"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1528..1530,1537..1539,1576..1578,1588..1590)
/gene="LOC100911813"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(1543..1545,1549..1551,1555..1557,1561..1566,
1573..1578,1585..1587,1627..1629,1633..1635,1645..1650,
1657..1662,1669..1671,1711..1713,1717..1719,1723..1725,
1729..1734,1741..1746,1753..1755)
/gene="LOC100911813"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 1612..1674
/gene="LOC100911813"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1684..2928
/gene="LOC100911813"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 1696..1758
/gene="LOC100911813"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1780..1842
/gene="LOC100911813"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1780..1782,1789..1791,1828..1830,1840..1842)
/gene="LOC100911813"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature 1864..1926
/gene="LOC100911813"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1864..1866,1873..1875,1912..1914,1924..1926)
/gene="LOC100911813"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(1879..1881,1885..1887,1891..1893,1897..1902,
1909..1914,1921..1923,1963..1965,1969..1971,1981..1986,
1993..1998,2005..2007,2047..2049,2053..2055,2059..2061,
2065..2070,2077..2082,2089..2091)
/gene="LOC100911813"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 1948..2010
/gene="LOC100911813"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2032..2094
/gene="LOC100911813"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2116..2178
/gene="LOC100911813"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2200..2262
/gene="LOC100911813"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2284..2346
/gene="LOC100911813"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2368..2430
/gene="LOC100911813"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(2368..2370,2377..2379,2416..2418,2428..2430)
/gene="LOC100911813"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature 2452..2514
/gene="LOC100911813"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(2452..2454,2461..2463,2500..2502,2512..2514)
/gene="LOC100911813"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(2467..2469,2473..2475,2479..2481,2485..2490,
2497..2502,2509..2511,2551..2553,2557..2559,2569..2574,
2581..2586,2593..2595,2635..2637,2641..2643,2647..2649,
2653..2658,2665..2670,2677..2679)
/gene="LOC100911813"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 2536..2598
/gene="LOC100911813"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2620..2682
/gene="LOC100911813"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2704..2766
/gene="LOC100911813"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2788..2850
/gene="LOC100911813"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2872..2934
/gene="LOC100911813"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 2908..2985
/gene="LOC100911813"
/note="Zinc-finger double domain; Region: zf-H2C2_2;
pfam13465"
/db_xref="CDD:433230"
misc_feature 2956..3018
/gene="LOC100911813"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(2956..2958,2965..2967,3004..3006,3016..3018)
/gene="LOC100911813"
/note="Zn binding site [ion binding]; other site"
/db_xref="CDD:275368"
misc_feature order(2971..2973,2977..2979,2983..2985,2989..2994,
3001..3006,3013..3015,3055..3057,3061..3063,3073..3078,
3085..3090,3097..3099,3139..3141,3145..3147,3151..3153,
3157..3162,3169..3174,3181..3183)
/gene="LOC100911813"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 3028..>3192
/gene="LOC100911813"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 3040..3102
/gene="LOC100911813"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 3076..3153
/gene="LOC100911813"
/note="Zinc-finger double domain; Region: zf-H2C2_2;
pfam13465"
/db_xref="CDD:433230"
misc_feature 3124..3186
/gene="LOC100911813"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
ORIGIN
ggtgggggagggagagaggcagagaaacagaaacacaaagagtacaaaatttctggattatataggaagagcttctggggaaaggaaaactcggtccctgcactggaaagttcaaggtacaaggtggggtatcccagacaggccctgatatgggtggggactgaggagtgctgggagaacctggaggcccagacagctttggtgtgttaaatatatgaaggtcagctgattgtagggtctgaatcccaacagccacaaaacaaaactcttgtttcctcaaatttctctttaattgttaatatcttgggcacccttccacttgtgggacagattaaaaactccactgcaagttgagcatgggggttatgcaagctgcataccttgattccaggaggaggaagggtaagagcctactgagtgttgtgagctgagttcaggttgaagtgaggaccgggtgagctcagggtcactgcccacgaaagggaggagcaagcggctgggcagtggtaggtggtgtggtgggtccttccgggggctgggcggggagacagatgagaacgctattggaggacaggcacaagtgctactgaaatgcaaatccctgtagatctggaaaaggtctggcttcaggcttgatgcttgggccggcaactgtgtacctacactgtacgttcagcccctcctacccttacggaggtgctcaagtcactcaaactactggccaatcggagtcttcaatggacctgccaatcaaaagggaaggcgggcttttccgggtgcctaggtgtaggattcggttagtagttaagcagtcttaactggtcctggctgctgtgctctctgtcctgccgttggattctctgaggcatgttcaggcaagctccaaagttgcgacatggttcaaagtgagtcttaactaccaggagatcccccaagtgaggcatgagaatggagtttaatgcaaaggatgcattgacctatgatgatgtacatgtgaacttcactcgagaagaatgggctttgctggatccttcacagaagagtctctacaaagatgtgatgctggagacctacaggaacctcactgctataggttacaattgggaagaccatactattgatgagcattgtcaaagtttcagaagacatggaaggcatgaaagatgtcatcctggagagaaaccctctgaaaatactcagtgtggtaaagcctttgcacaacagagtcatctccaaagacataaaagcacacatactggagagaaactctatgaatgtaagccacgtgataaagcctttacatacgattctcagcttcaaactcttgaaagaattcatactggagaaaaaccctacaaatgtaatcaatgtggtaaagcctttgaacgtcgttgtaatcttggaaggcataaactaatacatactggaagaaaatcctacaaatacaatcaatgtggtaaagactttgcaggactcagtcatctcaaaacacatggaataacacatactggagggaaaccttacaaatgtgatcaatgtggtaaagcctttgcatatcatagttctctccaagtacataaaagaatacatactggagagaagccctatgtatgtgaccaatgtggtaaagcctttgcacaactcggtcatctccaagttcatggaataacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagcctttgcacatcatagttatctccaagtacataaaagaatacatactggagagaagctctgtgaatgtgatcaatgtggtaaagcctttttatctcatagttatctccaagtacataaaagaatacatactggagagaatctctatgaatgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagctctatgaatgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagcctttgctcgactcagttatctcaaaacgcatggaataacacatactggagagaaaccttacaagtgtgatcaatgtggtaaagcctttgaacatcgttgtaatcttggaagtcataaattaatacatactggagagaaaccttacaaatgtgatcaatgtggtaaagcctttacatctcatagttatctccaagtacataaaagaatacatactggagagaagctctgtgaatgtgatcaatgtggtaaagccttttcatctcatagttatctccaagtacataaaagaatacatactggagagaatctctatgaatgtgatcaatgtggtaaagcctttgcatctcatagttatctccaagtacataaaagaatacatactggagagaatctctatgaatgtgatcagtgtagtaaagcctttgcatctcatagttatctccaagtacataaaagaatacacactggagagaagccctatgtatgtgattggtgtaataaagcctttgcatatcatagttatctccaagtacataaaagaatacatactggagagaagccctatgtatgtgatcaatgtggtaaagactttgtagttccgagcgagcttaaaagacataaaagaatacatactggagagaaaccttacaaatgtaatgaatgtggtaaggcctttgtaggtcagaatgatcttaaaaaacatagaagaacacatactggagagaaaccttacaaatgtaatgaatgtggtaaggcctttgtattcaattttaatctccgagcacataaagtaatacatactggagagaaaccttacaaatgtagtgaatgtggtaaagcctttgcatgtaacactagtctccgaacacataaagcaatacatactggagtgaaacctttcgaatgtaagcaatgtggtaaagcctttgcatgtaacactagtctccaaacacatagagcaatacatactggagtgaaacctttcgaatgtaagcaatgtggtaaagcctttgtaggtcagaatgaccttaaaaggcatgaaagaattcatactggagagaaaccttacgaatgtaatgaatgtggtaaagccttttcacaatcaagccaactccaactacataaaagaacacatacatactaaagagtaaccctatgaatgtaaccaatgcagtaaagcctttactgtgatattcaaaggtatggtggttaaaatatacttggcccatggcaagtggcattgttatgaggtatggcccttttggagtagatgtggcctttgaggatgtgtgtcactgtgggggagggggtggtggtggttggctttgagaccccatgcttaaactctacccagggcagaagagtcttctggctgccttctgatcaagatgtagaactctctccagcaccatgtctgcttggacactgagattccttccaccttgataatagactgaacctctgaatctgtataccctccccccaattaaatgtcctttctaagagttgccttggtcatggtattttttcacagcattaaaacccaaattaagacaaacagcataaaatataccacactagagaaaaactgtgaatgtactaaatatggtcaagcctttgcacatttgtataactctcactataacaaaagtattcatacttccattcactgaaaccctgggctctgtggcaaagtctgtgtcttgaaatctgcataaatacctaacaattcaaaaacatggtcaaagtaaatgccaggagtctattggaaacaagctgagttagaagggtagggattatgtttagggtggttgggtgtgcctttagtgctagtgaaaaagccgcgccaaaatttggggagcctctctagtcgcgggatggagttccccaggaaacgcgagtagcccgtcttgatgtaacagcaagaggtagcatttattaatgagatctcgggctgaaacgtgtgtcacgcaggagacagaggaatcgaccccaagactcgaaatttaaggctttttataggggaaggcaaggggattcagcgtggttatctgcaagggaaatgggtacaaggtctcatctgtaagcagtccgtgcgggctggagtgttctcaatgtaggagagcgtcttatctttatctgtagagcagggagttgtccgtcaggatggcccccgactcagctgagatggtggctgctagttcctggaacaatcccttgaccttgtttttaggcttgtcggggcacatctcaggcctgctctgtcctgtccccttatctgctgttcttttgcagtttttatgaagtttttattttaacttcattcccctctactttttgtgagtagttctaatcttagaactacatgatgagttcagcatctagaggctctttaccccgtacagcctgatactgttgtcttaacatgaggacatgtacagcactaatccgttccctgacaaaagttaaaaggcgattaatggggctggggatttagctcagtggtagagcgcttacctaggaagcgcaaggccctgggtttggtccccagctcc
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]