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2024-03-28 17:03:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_006250372            5275 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus nuclear VCP-like (Nvl), transcript
            variant X6, mRNA.
ACCESSION   XM_006250372
VERSION     XM_006250372.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006250372.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5275
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /country="USA: Wisconsin, Milwaukee, Medical College of
                     Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5275
                     /gene="Nvl"
                     /note="nuclear VCP-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 21
                     ESTs, 2 long SRA reads, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 49 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:289323"
                     /db_xref="RGD:1311270"
     CDS             304..2397
                     /gene="Nvl"
                     /codon_start=1
                     /product="nuclear valosin-containing protein-like isoform
                     X5"
                     /protein_id="XP_006250434.1"
                     /db_xref="GeneID:289323"
                     /db_xref="RGD:1311270"
                     /translation="
MPLKTPAREPEGGWFIDKTPGGQKESLPLDLSDDQSNCKKQDPGIQNLKDSSLLESDKKRKSRAKGKGNKRKTEGLQEADGEIEAILQKRAKAKSTELQISSVKFEDVGGNDATLKEVCKMLIHMRHPEVYQHLGVVPPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRDLFDQAVSNAPCIVFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVVGATNRPDSLDPALRRAGRFDREVCLGIPDEASRERILQTLCRKLRLPETFNFSHLAHLTPGFVGADLMALCREAAVCAVHRVLMRRQEQQRTEPETGGLPSDGEQGRSLGAEPPSETQDELQRLLGLLRDQDPISEEQMQGLCLELNDFIVALSEVQPSAKREGFVTVPNVTWADVGALEDIREELTMAILAPVRNPEQFRALGLVAPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLETRQQVFILAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRVAILKTITKNGTKPPLDEDVDLEAIANDHRCDCYTGADLSALVREASLCALRQEITGQKNGIGTAELTVSHKHFEEAFRKVKPSISVKDQRMYEALQRSLSQ"
     misc_feature    <592..2394
                     /gene="Nvl"
                     /note="AAA family ATPase, CDC48 subfamily; Region: CDC48;
                     TIGR01243"
                     /db_xref="CDD:273521"
ORIGIN      
ctgaagcaacgagtcattcagtacctcagtagtaatagatgtggcaaatatgtggacactggaatcttagcatccgacttgcaaagaatgtacagattatggtcgaagaaaaagaaatgcttttagaatccaggtggaaaaagtgtttaacataattagtagtgagaaagaacataagaatcttaaagaactagaagatggacatctggcaaaaagagcaagacaagatgaagatgatgagtacactgaaagctattctgatgatgattcaaacatggaagattacccagatccacagactccatgccattgaagacccctgcccgagaacctgagggaggatggtttattgacaaaaccccaggtggacagaaagaaagtcttcccttggacctgtcagatgaccaaagcaactgtaaaaagcaggatcctgggattcagaatttaaaagattcttctcttctggaaagtgacaagaaaaggaaaagtagggcaaaaggcaaaggaaacaaaagaaagacagagggtcttcaagaagcggatggagagatagaagctattctgcaaaagagagctaaagcgaagagtacagagttgcagatttccagtgtgaagtttgaagatgtcggaggcaatgatgcgacattaaaagaagtctgcaagatgctgattcacatgcgtcatccagaggtgtaccagcaccttggtgtcgtgccccctcgtggagttcttctgcatggaccaccaggctgtgggaagacattacttgcacatgcgatagcaggggagcttgacttgccgattctgaaagtggctgccccagagatcgtgtcgggagtgtctggagagtctgagcaaaagctcagggatttatttgaccaggccgtgtcaaacgcaccatgtattgtgttcattgatgaaattgatgcaatcacccccaaaagagaagttgcttcaaaagatatggaacgaaggatcgtggcccagcttctaacctgcatggacgatctgaataacgtggcagctacagcccgagtcctagttgttggagctactaaccggccagactcattggatcctgctctgagacgtgcgggaaggtttgatcgagaagtctgcttgggtatcccagatgaggcatccagagaaagaattctccaaactttgtgccgaaaactgagacttccagaaacctttaatttttctcatttagcacacctgacaccaggctttgttggtgctgacctgatggctctttgtcgagaggcagccgtgtgtgcggtgcacagggtcttgatgagacggcaggagcagcagaggacagagcctgagactgggggtttgccctctgacggagagcaggggagaagcctgggagcagagcccccttctgaaacacaggatgaattgcaaaggctgttggggttgctaagagaccaagatcccatctcagaggagcagatgcaaggactgtgccttgaattaaatgatttcattgttgctctatcagaagtccagccttctgccaaaagggaaggctttgtaactgtccctaatgtgacatgggctgatgtcggtgccctggaagatatcagagaggagctcaccatggcaatattggcacctgttcgaaacccagagcagttcagggctcttggtttggtggccccagctggtgtcctcctagccggacctcctgggtgtgggaaaacgctgctggcaaaggctgtggcaaatgagtctggactaaattttatatctgtcaaaggccctgaattattaaatatgtatgtcggggagagtgagcgcgctgtgcgacaggtttttcagcgagccaagaactcggcgccctgcgtgatattctttgatgaggtggatgccttatgcccccggagatcagaccgagaaacaggtgctagtgtccgtgtggtgaatcagctgctgacagaaatggatggtttagaaacacgccagcaagtttttattttggctgccactaatagaccagatatcattgaccctgctattctgcgccccggccggctggacaaaacactctttgtgggtttgccacccccagcagaccgtgttgccatattaaagactattacaaaaaatggcaccaaacctcccctggatgaagatgtagatttggaagcaattgctaatgaccatcgttgtgattgctatacgggtgcagacctttctgctttggtccgagaagcttctctctgtgccctgagacaagaaataacaggacagaagaatggcattggaacagctgagctgacggtcagtcataagcactttgaagaagctttcaggaaagtgaaaccatccatatcagtaaaggatcaaaggatgtacgaagctctacagaggtccctcagtcagtgacgtccacgcccagtgcgtgggactcaccacgaaccacactcacctgacgggtctgctttcaacttgacacaggtggtcttcttgtaagcatttcattttcaagttaatgaggccaaatcgaagaaaatggtgtttcctatctgaccagctttgtggaaaaactctctacctcctttttaagaaagagaaaaaaagaaatgataaaaccttattcaaataaaattttattttgaactatcttgatcacgcataaacagtttccttgagaattgatcaccttacatcccatcatctcagttacacattcatatcagaacatttttctgcattaccaaccatcagtacattgacacattgctacagtttcactccaatcagtcttactcagctcttctgatgtcatttatagtagagggatctggtctaagttacctattccagtgtgttaagtcttccttagagtttccacaagtttttgttgttgctggattttgcgttttgtttggggatagtttgtatgtacccctgtctggcctggaacttactgtatagagtaggctggcctcagactcccagagttctgtgtgcctctgcttcctgagtgctgcgattaaaggtgtgtgccccatatccagcttttctcccgttcttaggtcagtgattggattggcttaattttatctccttgaagatacatagtaaagccagtctcggcatcctctcaggcgctaatacagctctctggtccttcaaactgtccctgcagtcacttgattcacgtggtctaggaggctcctacactgcagtcactgcttttcctttttaattcactcctgtgttgggaagataatttcccttctcatacatgtgttccaccctcgccagatccaggggagagtgtttttcagtgttttattcatcgtcatgttggatgttcagattgtctcgaattgtgtctttagtgaatctctaagctaatgttttatgaggaagtttatgctgtgtcatggttatttcaaccagccattcaagcattgctgttgctgtacaaacaggtctgcttatttcattctcttcctaaatttttttttttttttggttctttttttcggagctggggaccgaacccagggccttgtgcttcctaggtaagcgctctaccactgagctaaatccccagccccctcttcctaaatttttattctatctctttctgcaaagtctttgaggttccttttaagaatttaagaatgatggagctgaagaaatggcttagtaattaagagtacatactgctctttcagaggaccaagtttgattcccagcacctacataggcagctcaaaactgcctgtactcctagctacaggaggtcctgcatttctggcttccacattacctgtgctcacatgtgtataacaccctccccccacacacacccccaacactttttagaaattaaacatttttataaaaccaatgaaattgataatgggttggtgaaatgattcagcaggtaaaaacacttgctaccaagcgttacaacctgatcttgatcctggggagtcacgtggtgggaagaactaactcctaaaagctgtactctgaccctgtggatctcagtcgagatctctctctctctctctctctctctctctctctctctctctcacacacacacacacacacacacacacacacacacacacacgcaaacacacacattaaattggaaaaatacaactgaaataaaattagagttatggttgcaaaggtcaacatgacctttatcatggggacttggcagaggtttataggtacagaatgacactgttcaatgaagaacgtaaaggaaacaactggatcccagaatgagggcgattggagagttagaaataagtgccagaaaaacctttaatagtgagcctgagctgttgagcctgatgccacacttgctgtatgccaaatgaaaacgctgtctgccatgtcggatcttctcgacaactgaatgctgggtctaagtgcatgtattcctggtgacctggacataaaatgcaggttgtgtctgctgtggtacaagtggaacagaagtcagttactgagcagaaaatggattacaacatttcttcaaatagcaccttttgaacatactctgtggagtgcttgacactcgtgtgtcttatgtggtgttcccagctcagtaggctcttttcacatacacactttatagaaatgaagatggagagtttgctaatacaagaggagtggaggctggtggcttcataaattggcactcggaagtgctgttaacgtcttggttggggatgtttctttaccaattttttcatgactggctcacctgtgcccttttgtacaagaacccttgaggacctgttcttccaacttaaggataagaagcttacttaggggttggagaaagagcacagcagttaagagttcagttcccagcaaacatggtggctcacaaccatctgtcatggggtctggtgccctcttcctggtgtttgttgtacataaagacagctatagtgtgctcacgtacacaaataacatctttaaaaaaagtgcctgtgtgggagtgcccagaagtactgccctgatggggaaagatagcaccttagactcaatttcaggttgctctgctgtctgccagtgaacttacctgactatcttgtcagggtccttagccggccctaagccggcccgctgagtgtggcagcacattcagggttttctgtgactgacatccttatagctttcgcctttataaatgctgcatctgtgagctttgggtcaaaacttctttgtgacaagagcctgctctctatcttaaataaagactgcttgcttggcctta
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]