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2024-03-29 15:47:02, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_006236518           10662 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus oxysterol binding protein-like 3
            (Osbpl3), transcript variant X4, mRNA.
ACCESSION   XM_006236518
VERSION     XM_006236518.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006236518.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10662
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /country="USA: Wisconsin, Milwaukee, Medical College of
                     Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..10662
                     /gene="Osbpl3"
                     /note="oxysterol binding protein-like 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 21 ESTs, 3 long SRA reads, 14 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 12 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:362360"
                     /db_xref="RGD:1564287"
     CDS             3983..6643
                     /gene="Osbpl3"
                     /codon_start=1
                     /product="oxysterol-binding protein-related protein 3
                     isoform X1"
                     /protein_id="XP_006236580.1"
                     /db_xref="GeneID:362360"
                     /db_xref="RGD:1564287"
                     /translation="
MSDEKNLGVSQKLVSPSRSTSSCSSKQGSRQDSWEVVEGLRGEMTYTQEPPAQKGFLLKKRKWPLKGWHKRFFCLEKGILKYAKSQTDIEREKLHGSIDVGLSVMSVKKSSKCIDLDTEEHIYHLKVKSEDVFDEWVSKLRHHRMYRQNEIAMFPRDVNHFFPGSSVTDSAPGVFESVSSRKRSSLSKQNSFPAGSNLSFSCGGDTRVPFWLQSSEDMEKCSKDLAHCHTYLLEMSQLLESMDVLHRTYSAPAINAIQGGAFESPKKEKRSHRRWRSRAIGKDAKGMLQVPKPFSGPVRLHSSNPNLSTLDFGEEKSYSDGSEASSEFSKMQEDLCHVAHKVYFALRSAFNSISMEREKLKQLMELDTSSSPSAQVVGLKHALSSALAQNTDLKERLRRIHAESLLLDPPAGPKPGDNLAEEISRDESRALVHQLSNESRLSITDSLSEFFDAQEVLLSPSSSENEISDDDSYVSDISDNLSLDNLSNDLDNERQTLGPVLESSGEARSKRRTSLPAPGPNTSSVSVWSILRNNIGKDLSKVAMPVELNEPLNTLQRLCEELEYSELLDKAAHMPSPLERMVYVAAFAISAYASSYFRAGSKPFNPVLGETYECIRQDKGFQFFAEQVSHHPPISACHAESRNFVFWQDVRWKNKFWGKSMEIVPIGTTHVTLPAFGDHFEWNKVTSCIHNILSGQRWIEHYGEIVIKNLRDDSCHCKVNFIKAKYWSTNAHEIEGTVFDRSGKAVHRLFGKWHESIYCGGASSSTCVWRANPMPKGYEQYYGFTQFALELNEMDPLSRSLLPPTDTRFRPDQRLLEEGNIEEAEVQKQRIEKLQRERRRVLEENGVEHQPRFFRKSSDDAWVSNGTYLELRKDLGFSKLDHPVLW"
     misc_feature    4070..4438
                     /gene="Osbpl3"
                     /note="Human Oxysterol binding protein related proteins 3,
                     6, and 7 Pleckstrin homology (PH) domain; Region:
                     PH_ORP3_ORP6_ORP7; cd13287"
                     /db_xref="CDD:270104"
     misc_feature    5558..6601
                     /gene="Osbpl3"
                     /note="Oxysterol-binding protein; Region: Oxysterol_BP;
                     pfam01237"
                     /db_xref="CDD:426145"
ORIGIN      
gacatctttgtggttgggattcccggggcaggcagttggggctcgtactttcagtcttgagagtcagcccccgctatgcttcttatcagtactcaactgaggtttctgcgttgttgtgttggatgaccggctacagaagtgatatgaggcagccttctcctcttgtcacgtggtctgtaacgcttctctaagaactgagagacagtcagagtgtgagcaagagactgtcggtgcagctgagagcacgagggtggtaagtggagggtgaagcaagggggagagagcagagggtttggggagaagaggccacacaactctggaaaacggtttctatttcagttttacttctgtggtatgtccttaagtttgaaagatcaaccagaagaaaaagtttaaaggagaaagtaaactatcatcccaaatctaagccagaggatcctcgtggtgaatatcttttgtctacagtatggagagatgaagagacgtaaccctgtaagactgggttcagtaaaagtctgtattctaaaatgagtcatctttttatttaacaaaggggaatgaatgactgatattatgtgaagtaacttttattattggactgccttctcctggttcagaaagtatggaaaccacctagctggtgggaggctggatggccactagtacctcgggatccctgccgtttttctcctgtttttttggcttgttttgttttaatgaatgctgttaggattttaatgtctttctgatgtctgtggccccaatcaatgccttgttaaccagggcttactattttaataaattgatgtttggtggatttaattttttgaaaccattttgaggtgtgttactctgagtttgtttgtgaattctttgtttttgaggagtgtcactcatgttgtgtgtttagtgtagagggtggaacccacaggtcaagtactctatcttcagacacaccagaagaggccatcgaatcccattacaagtggttgtgagccaccatgtggttgctgggagttgaactcaagacctctggaagagcagtcaaagctcttaactgctgagccatctctccagccccctattgttcatatttggacagacaacttttctactgtcaaattggcttctaaagacagtttatactgttatttataggggtcctattttaaatggggattttttttaaagacagcgtctcatgtgttccaggttgatattgatctgtctttgtagccaagggtgactttgaacttctgatcctggtgtttccacttcctgcagagtgttagggttgcagacatgcatcaccatgcctggtataggctggaatatgtatgcagtgggtagaccaaacccaggacatggtgcatgggagctcagctctctactaactgagctacatcactagtccattgagtgggaaggcatataagaatcagtagtggaggggctggggatttagctcagtggtagagcgcttacctaggaagcgcaaggccctgggttcggtccccagctccgaaaaaaagaaccaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaatcagtagtggaatatggattttagcagtggctaaaattgaattgtaaattagccatcaattacagataaatctgaatgttgggaaaccggctgttttcttggtgaatttctcacgcgtttgctgcatggaatgataatgcctggtgggcagctttatgaatgtctaggactcagtgactgcctgggggttcttggctggctcctggcctttctgtctctctgttgtgaagactcttggctgaccagagccagtgtttgttgccatcagaagataaaggaaaggagtaaataatttcagctacctacaaattggcagctggtaatatcgtttcaatggacatcttttgctgttatcattgttctgcaagacaggctttcaccttgtatcaccagctattgtgttaatagtgagcagtgtttagagagagcattcgtttaagtccacgcctctttttctgtaaattttttgggggttattggtacaaatcacttgctgccacatggaaaacacgtatcgtgttttaccttttctttcattttaactacccagtaaagtaaatgctggacccgattgcctgggtgtgaattaacacttgaagaggcagtgtctagttggccctgcctcagtggtactcagccattggctgggtcagagggagatgagtgtaaatgtgcaggggtgtccttgtactcatttgtactaacaaaacagggagaggggctaagtgacttagagtgctatgttctaacgctgtctggaatgattttaaattaaattaaacatacagctagcttattgcataagtaagccccatatccagggccccagtggatggctagcatgtctccaaggctccagggtcagcatcactgctggggtagtcctgatgcacatatacaaggcttcctcttccttgaccctttggtgttgcctttgttctgatgagtggctctccagcaacttcctctttcccttggtttcagttgttccatccaggtgacactataaaactgctttccctgtggccccattggcaccctctgatttcagggcacataaaaccttcagggcatcctgggagggggggggggctagttcattgcagtgcaggatttacttgatcgcctccagctaaggcctacatgtttacatgattttactgaaggctggaatgggcatattgactgtaactcacagtagattggctcttcacaggtatttaaatgcgtcatcacttagaacttctgcttcagctctctgcttcccagtggcactgtgttcttgctgggaaggacagaattgggttctcttctttgctgtcctctcactgatgtcttaaggcacagttgccagttgagaatgtgctcacaacctgggataaactgttgtgaaggtatcaccaggtaacacatgagagatgctgagatcttgtcaacaggtagacatctaagggacttgtcatccatctcctcattctgcctagtcttgaatcaaggccactctcgtggtctatcaatcatcatcacatgctcactttgatgagccaagaggtccatgttctagactgtgtcttcctcacctaaaggacttgtattaggcaaaggtgaggcctgtggttgatggccaacgagctctcttctgagtttgccccggaagcagaaatccaatgctcctggtggaaggagcctgattgtctgtagtgaggagagtaggtgtggttgcccacttaactgagctctgtggttccatactctcacaatgtctactttctagcctagaggcctgccaggggtgtgggttagttagtgttgtataataaactgggttagttagtgttgtgtaataaactttggcaaagctaactctccaaacaaaatgttttacttgggcatccataagacttagaattgcaaccatcaacacatgtagaggtcagggtgacctcttgcatgtctagggaacaaagacaagattacagggtgctacactttgattgtgaaatgtcctgcacaggtttatgtattacagttagtccctagccaatgtcaccactttgtaaagttgtggaacttttaagaggtggggcctagctgaagtaggtcagttgggcttgggccgtgagagttatagctgatcccgacttcctctttgatgctcgctgggctgagtctcttgagatgtgagcaggcaagcagtctcagactcccaccactatggacccagccttgagcttcgtgccttccctgctttgatggactgtactctcaaactagatttcctctgagacttccaaaatggttttcagacacactggataagagtcagcaacttcctgcgaggacttcatactttcagctctacgtcttcccatggcattttgaccgcgctgagcccaagggacctgctcttcacaatgagtgacgagaagaatctgggtgtgtcccaaaagttggtttcaccctcaagaagcacaagtagctgttcctccaagcaaggaagccggcaggacagctgggaagtggtggaaggattgagaggggagatgacttacacccaggagccgcctgcgcagaaaggatttttgctgaaaaagaggaagtggcccttaaaaggctggcacaagagattcttctgcctggaaaagggaatcttgaaatatgccaagagccaaactgatattgagagagagaagctgcacggcagtattgacgtggggctctccgtgatgtctgtgaagaagtcatccaaatgtatagacctcgacaccgaggagcacatctaccacctgaaggtaaagtcagaagacgtctttgacgagtgggtgtccaagcttcgtcaccacagaatgtaccggcagaatgagatcgccatgtttccccgggatgtcaaccactttttcccagggtcctctgtcacagactctgctccgggagtattcgagtctgtttccagtaggaagcgcagcagtctatcaaagcagaattcatttccagctggaagcaatttgtcattttcttgtggtggggacacacgagttccattctggctacagtcttcagaggacatggaaaagtgctcgaaagacttggcacactgccacacttatctgctggagatgagccagctcttagaaagcatggacgtcttgcatcggacatactcggcgccagctatcaacgccatccagggtggagcttttgaaagtcccaaaaaggaaaagcgctcgcacaggaggtggcggtccagagctattggcaaagatgctaaaggaatgctgcaggtccctaaacctttttctggcccggtgagactgcactcctccaatcctaacttgtcaacactggactttggagaagagaagtcttactcggatggttctgaagcctcgtcggagttctccaagatgcaggaggacctgtgccatgtcgcccataaagtttacttcgctttaaggtcagctttcaatagcatatcgatggagagagagaagttgaagcagctgatggaactggacacctcctcctccccttctgctcaggtcgtcggtctgaagcatgccctgtcatccgccctagcacaaaacacagatcttaaagaacgtttacgcagaatccatgcagagtctctgctcctcgacccgcctgctggtcccaaaccgggggacaacctggcagaggaaatctccagggatgaaagccgagccctggtacaccagctctccaacgagagcaggctgtccatcaccgactccctttctgagtttttcgatgcccaggaagttctgctatctcctagctcttcagaaaacgagatctctgatgatgattcatacgtcagtgacataagtgataatctgtccttagacaacctcagtaacgatttagacaatgaaagacagaccttgggtcctgttctcgaaagtagtggggaagccaggtccaaaaggcggaccagcctgccagcgccgggacccaacaccagtagcgtgagtgtgtggagcatcctgcgcaacaacattgggaaggacctgtccaaggtggccatgccggtagagctgaacgagcccctgaacacactgcagcggctctgcgaggagctagaatacagcgagcttctggacaaggctgcgcacatgcccagtcccctggagaggatggtatacgtggcagccttcgccatctctgcatatgcatccagctacttccgggcaggcagcaagccatttaacccggtccttggagaaacgtacgaatgcatccgacaggacaagggtttccagttttttgccgagcaggtcagccaccacccgcctatctccgcctgccacgccgagtcccggaactttgttttctggcaagacgtgagatggaaaaacaaattctggggtaaatccatggaaattgtcccgattggtactacccatgtgactctgcctgcgtttggagatcacttcgagtggaacaaagtgacctcctgcatccacaacatcttaagcggacagcgctggatcgagcactatggtgaaattgtcatcaagaacctgagagacgactcctgccactgcaaagtgaacttcataaaggcaaaatactggagcactaatgcccatgagatcgaaggcacggtattcgaccgcagtgggaaggctgtgcaccggctgtttggaaaatggcatgagagcatctactgtggcggtgcctcctcctccacgtgtgtctggagagcaaatcccatgccgaaaggctatgagcagtattatggcttcacacagtttgcattagagttaaatgaaatggatcctttgtcaaggtctttattaccacccaccgacactcgttttagaccagatcaaaggcttctagaagaaggaaacatagaggaggctgaggtgcagaagcagaggattgagaagctgcagagggagaggcggagggtcctggaggaaaacggtgtggagcaccagccccggtttttcaggaaatccagtgacgatgcttgggtgagcaacgggacctatctggaactgaggaaagaccttggcttttccaagctggaccatcccgtcttgtggtgaaatgtaagggagagagagaatccctgcactttgcccacagttgcttccggaagcaacacacacctgtctgtacgtttaaacgatagcagccagaacgatcccttgtgcttagcgtagcatcgtaagcactgaagtatatacttttcttcagtaagtctctttacagtttcaagtgttatcacgatcgtttatatgaatgtagaacgcctcggtatttctttttatatataaactatttaataaaaatgaaaggttgaatgttaatgtgtgggttacaaaaaaaaaaaaaaaaccatttaacactaattttccaaaggtaagggggaaaattcagatttatgccttataaaatcacactggaaaaacaaaatttcccaggtgtgctaagaaataataacacccagggccactcgcccatgcatagctatctgggtttaattgggagctgggatatctttctgcctcaggcagctcttcgattgctcatacagaacaattctgctggtgctgaagtgccaagaatactgtcatctcgtcttcgtggttcaggaatctgtacaaagttagtgggatgcctattttttatgtaaggcgggtatcacccaaccggaagaagtcttctctccctcgagttctgttgccttatgtataaaactgcacccagcttgcttagagaagttgccttcatcagagaagactccattaattcagtgtcccgatggcgtcctagggaggcagcaggcattttgtttttccccagtaagagctgaatcctttaaaaacttaagaaactacttttggcttcctgccccacccacagcttgcaagccctccttttggccccagttgaggacgaaatgtctctcatttagtatagacaaactgtaacagcccacggcagtgtgaccttctaaaacttcagcgaagtcaccggtggctttaaataacctggcatgttgtttctccacacagctttggtattctctacctcttaccgagcaccgtacttttgaccttgtatagagagtttgaccatctgccttatagacaaacactgctgttcttctgtgtcgtcctctgagaaagctgcaagggtttacctctctccttgactctcttcttatttgtgatactctgagttctacatctgtctcagataggagctaccaaagggaaactgttgttcttgtaagtgtcttacttcaaatcatgatattagaatgaatgtacccagtagctgaattgtgttaccagaacaactttgacttctgcccagagcacattaaaccaaagactgattgctaagcctttgatgcgaatgtctatagcagttctatgaaacactgcgtgtaatgacagggtaaagagatgcatttgagggccagcgagatgggctcagcagtacagcacttacccagcactgaggaaagtctccaggacccacttcaaaggtagaaggagagagccagctgcgcagagttgacccgtttcacaccagataaccgacgggacagcgcgaagttttcacagtggggcgttgaaggtgaatcagcagtctttgtcgtctacaagtgactgtcattttaagcacctcattaaatattggttcatttattccttgttatggatacactgagatgaaccagcgggaatctcatttccatttctaagtagctggatggtgccaccggttcttttgtccctgttttgtttttttctccttttcaagtgttttttttttttccgttatccacattttgaccacaggctggagatgtaaggaaggatctcagcagggaaacgaaacctcgaggacaaatgtgggattttagtaatactggctgtgaaataggcctgcttgagaggctgccccaaaggagaaggaaaaatgacaaaaaccacaaaattaagaatgtacccccagagtcagtacagccagttacttgaaaattcttaaagtatctcctgatataatttctgttggccttgagctgtaatttggaaccacacaaacagctgatccaaatgtctctgctgtagtcaccttatttgaatcagggacaggaatgaacagagtatgttccagaaccatgtgaaagctctctaagtcaccaccagtgtctggattacaagcttccggagatgcagatggtcaggaggtgcacgctgttacttgaatcttaaaactccctgctggagggaggaggctgctacattcctcctgtcctgtctaacacacccttcctccaagtttgtatgtctaggacttgggtattttcataaggaaaatagaattgtgggtattattttgggaagaattaagatagttttaatctttctgaactgactttctccaatacacaatgccaaccgctgccctctttgatgtgcatgttttagcccctctcattccaattatcctgtttcaagtttatggtgagttacagatgttctcctagtagtgggaccttgtgctaaccacacgctgcacctcatatattttccttctcagcactcagaaccctgatctgcaaggcatcattaaagaatgagtatcttcgctgtagcaaatgaggggcgcactctcccccacaggccttctgatgaaagcctcagtgcagcttcttcgtgcagttcacatcttgttgctaggatgctcctggtatttactaaacataggcagttcacctcccagacaccagggggattgaggtactaacaaaagagatgcaattcacctcccagacaccagggggagtgaggtactaacaaaagagatgcaattcacctcccagacaccagggggagcgaggtactaacaaagagatacagttcacttcccagacaccagggggagtgaggtactaacaaagagatgcagttcacgtcccagacaccagggagagtgaggtactaacaaaagagatgcagttcacttcccagacagcagggagaatctggtactaactaaacataggcagttcatctcccagacaccagggggagtcaggtactaactaaacagatggatgcagtgcgatttttgagacactagggggagcccggtactaactaagcagccttaggagggttcttgtactaaccagattggggggtgggggttcactttaggtcataaatacaattacctactaagtagcaagaatgcctcagcagtccccaagccttccagtgcctctgggggcttcctgagttttttaatgttagctccatttaggcttctgttttcctcatcctattttttaattacttccaataaatcatttgctcagccttctagcactgccattcctctgtatttgccagatttatgatgcattgttttagtctacccttaaagaagtcaagccagaagtcaagccaaacgtagaggtgagggttactttactttttactgtaggcctactgtgcacaccccaagctctctgagggactgtagccatcagagactcctcacaccctctagctaccaatcagagctatacgtttttctcctcatcttaggaatacaggctacagtgttcggtcagaatttattcgaatgtctttatttttaataccaacatcagcataaatctatttttgctagtagatcaaagctattttctcatgctttgttttctgtcttgtatcgatctgtgaatctggttatctttgttgaaaacctacatatcaaatgtctctgcaaatcaagatggtctaaagtgcaagctggttttctgtttgtttgtttttgaaactgggttcaggggctgcagttgtcagaagtgactcaattgcttcatttgtgatgaatttttttatcttcctctgttaccccacaggatatgcttttgggggaaatgatacttgtaaatcttctatttagccatttgtaaaatctaaatcctaccacactacctgtaccccttttgcttcccccagaggctccttttcatttgctgtctctctgcccctgtgtagctcactgactgagaataaagaatacagcaaaaact
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]