2024-03-29 07:22:53, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_145767 2403 bp mRNA linear ROD 20-MAR-2023 DEFINITION Rattus norvegicus dorsal root ganglia homeobox (Drgx), mRNA. ACCESSION NM_145767 VERSION NM_145767.2 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 2403) AUTHORS Ito T, Sakai A, Maruyama M, Miyagawa Y, Okada T, Fukayama H and Suzuki H. TITLE Dorsal Root Ganglia Homeobox downregulation in primary sensory neurons contributes to neuropathic pain in rats JOURNAL Mol Pain 16, 1744806920904462 (2020) PUBMED 32000573 REMARK GeneRIF: Dorsal Root Ganglia Homeobox downregulation in primary sensory neurons contributes to neuropathic pain in rats. REFERENCE 2 (bases 1 to 2403) AUTHORS Rebelo S, Chen ZF, Anderson DJ and Lima D. TITLE Involvement of DRG11 in the development of the primary afferent nociceptive system JOURNAL Mol Cell Neurosci 33 (3), 236-246 (2006) PUBMED 16978876 REFERENCE 3 (bases 1 to 2403) AUTHORS Ding YQ, Yin J, Kania A, Zhao ZQ, Johnson RL and Chen ZF. TITLE Lmx1b controls the differentiation and migration of the superficial dorsal horn neurons of the spinal cord JOURNAL Development 131 (15), 3693-3703 (2004) PUBMED 15229182 REMARK Erratum:[Development. 2009 Jun;136(11):1961] REFERENCE 4 (bases 1 to 2403) AUTHORS Samad TA, Srinivasan A, Karchewski LA, Jeong SJ, Campagna JA, Ji RR, Fabrizio DA, Zhang Y, Lin HY, Bell E and Woolf CJ. TITLE DRAGON: a member of the repulsive guidance molecule-related family of neuronal- and muscle-expressed membrane proteins is regulated by DRG11 and has neuronal adhesive properties JOURNAL J Neurosci 24 (8), 2027-2036 (2004) PUBMED 14985445 REFERENCE 5 (bases 1 to 2403) AUTHORS Ding YQ, Yin J, Xu HM, Jacquin MF and Chen ZF. TITLE Formation of whisker-related principal sensory nucleus-based lemniscal pathway requires a paired homeodomain transcription factor, Drg11 JOURNAL J Neurosci 23 (19), 7246-7254 (2003) PUBMED 12917357 REFERENCE 6 (bases 1 to 2403) AUTHORS Chen ZF, Rebelo S, White F, Malmberg AB, Baba H, Lima D, Woolf CJ, Basbaum AI and Anderson DJ. TITLE The paired homeodomain protein DRG11 is required for the projection of cutaneous sensory afferent fibers to the dorsal spinal cord JOURNAL Neuron 31 (1), 59-73 (2001) PUBMED 11498051 REFERENCE 7 (bases 1 to 2403) AUTHORS Saito T, Greenwood A, Sun Q and Anderson DJ. TITLE Identification by differential RT-PCR of a novel paired homeodomain protein specifically expressed in sensory neurons and a subset of their CNS targets JOURNAL Mol Cell Neurosci 6 (3), 280-292 (1995) PUBMED 7496632 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from JACYVU010000273.1. On Nov 27, 2020 this sequence version replaced NM_145767.1. ##Evidence-Data-START## Transcript exon combination :: U29174.1 [ECO:0000332] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-193 JACYVU010000273.1 7854849-7855041 194-312 JACYVU010000273.1 7855270-7855388 313-410 JACYVU010000273.1 7859257-7859354 411-512 JACYVU010000273.1 7860489-7860590 513-691 JACYVU010000273.1 7863331-7863509 692-804 JACYVU010000273.1 7863595-7863707 805-2403 JACYVU010000273.1 7882806-7884404 FEATURES Location/Qualifiers source 1..2403 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="16" /map="16p16" gene 1..2403 /gene="Drgx" /gene_synonym="Drg11; Prrxl1" /note="dorsal root ganglia homeobox" /db_xref="GeneID:252880" /db_xref="RGD:628616" exon 1..193 /gene="Drgx" /gene_synonym="Drg11; Prrxl1" /inference="alignment:Splign:2.1.0" misc_feature 162..164 /gene="Drgx" /gene_synonym="Drg11; Prrxl1" /note="upstream in-frame stop codon" exon 194..312 /gene="Drgx" /gene_synonym="Drg11; Prrxl1" /inference="alignment:Splign:2.1.0" CDS 279..1070 /gene="Drgx" /gene_synonym="Drg11; Prrxl1" /note="homeobox protein DRG11; dorsal root ganglion 11; paired-related homeobox protein-like 1; paired-like homeodomain trancription factor Drg11" /codon_start=1 /product="dorsal root ganglia homeobox protein" /protein_id="NP_665710.2" /db_xref="GeneID:252880" /db_xref="RGD:628616" /translation="
MFYFHCPPQLEGTAPFGNHSTGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTERGASDQEPGAKEPMAEVTPPPVRNINSPPPGDQARGKKEALEAQQSLGRTVGPAGPFFPSCLPGTLLNTATYAQALSHVASLKGGPLCSCCVPDPMGLSFLPTYGCQSNRTASVAALRMKAREHSEAVLQSANLLPSTSSSPGPASKQVPPEGSQDKPSPTKEQSEGEKSV"
misc_feature order(378..392,396..398,447..449,465..467,504..506, 510..515,522..527,531..539,543..548) /gene="Drgx" /gene_synonym="Drg11; Prrxl1" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(384..386,393..395,513..515,522..527,534..536) /gene="Drgx" /gene_synonym="Drg11; Prrxl1" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 387..545 /gene="Drgx" /gene_synonym="Drg11; Prrxl1" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature 540..683 /gene="Drgx" /gene_synonym="Drg11; Prrxl1" /note="propagated from UniProtKB/Swiss-Prot (Q62798.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 879..932 /gene="Drgx" /gene_synonym="Drg11; Prrxl1" /note="OAR domain; Region: OAR; pfam03826" /db_xref="CDD:427530" misc_feature 888..929 /gene="Drgx" /gene_synonym="Drg11; Prrxl1" /note="propagated from UniProtKB/Swiss-Prot (Q62798.1); Region: OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138" misc_feature 933..1067 /gene="Drgx" /gene_synonym="Drg11; Prrxl1" /note="propagated from UniProtKB/Swiss-Prot (Q62798.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" exon 313..410 /gene="Drgx" /gene_synonym="Drg11; Prrxl1" /inference="alignment:Splign:2.1.0" exon 411..512 /gene="Drgx" /gene_synonym="Drg11; Prrxl1" /inference="alignment:Splign:2.1.0" exon 513..691 /gene="Drgx" /gene_synonym="Drg11; Prrxl1" /inference="alignment:Splign:2.1.0" exon 692..804 /gene="Drgx" /gene_synonym="Drg11; Prrxl1" /inference="alignment:Splign:2.1.0" exon 805..2403 /gene="Drgx" /gene_synonym="Drg11; Prrxl1" /inference="alignment:Splign:2.1.0" ORIGIN
gcagaggtaggcagggttcccgagccgctctcccggctccctgctctgggccttggggctccaccggcttcttggcccgagctgctgcgcgtgcagatggccttgcgcgatcgccggaccccgctgcggtggccaagtgcagggcttgtggctgggacccctgagaaccaggagccagactgtgctcagcttgccaggccggagccacgcacgggcacaagtctgtcaggccgccatcagtcctggtccagccgtcagggcccatccgaccgtcggcgatgttttatttccactgcccgccacagctagagggcacagcgccttttggtaaccactctacgggggattttgatgatgggtttcttagaagaaaacagcgcagaaatcggacaaccttcactcttcagcagttggaagctctggaggcagtctttgcccaaacacactacccagatgtcttcaccagagaagagctagccatgaaaataaacctcacagaagccagagtgcaggtttggttccagaaccgaagagccaagtggaggaagacagagagaggggcctctgaccaggaaccaggggctaaggaacccatggcagaggtgacaccacccccagtgaggaacatcaactctccacccccaggggaccaggcccggggcaagaaggaggccctggaggcccagcagagcctgggacgcacagtgggccccgccgggcctttcttcccctcctgcttgccagggaccctcctgaacacagccacttatgcccaggccctgtcccatgtggcatctctgaaagggggcccactgtgctcttgctgcgtcccagaccctatggggctctccttcctccccacttacggttgccagagtaaccgcacagccagcgtggctgccctgcgcatgaaggcccgcgagcattcagaagcggtcctgcagtctgccaaccttctgccgtccaccagcagcagccccggccctgcctccaagcaggtgcctccagaaggcagccaggacaagccctccccaacgaaggaacagagcgagggagagaagagcgtatgagggtccggagaacccagctgggagccctgcccacccctgcttctctcagcctcagccctgccagcctctgaaccacaaggagtagccacctcctcatggatctgacagggcaaacgggacctgcaagctggttgagacctgaagagtccctctagaattctgctggtaggctgtgttgttctcgcttttcctttggtgacattttccgatggctcttagtgactctggacactgctctgtgatgaggtccctgttttttgctttttgttttgtctcttttttttttttgttttgttttgttttattttccaggccaagcagccttggagcaaagcagattagtttattccaccatccttcttgagatatctgggaaggtcttgtcaattccaaggactgtggcaaggatcatccgtgaaagatgccaagaagtgacatctcatgacaggaaatgagacgggcactcccatattgcttaagaaccacagaactggtggactatcagccagttctcactcccttcagccaggactggcatcggcctcctttgtcttgtttaaaggaattagctgaggttttggctaggaagtgacaagatatgggctgaagacattgtggtcctgaccctagcagatctccctgggcacatctgacctggtccagtcaggcaggttgtcagttcggggatgggggctgctctgctgattctgtgtgtgggttccctgcaattagagtgttcacttgcaggccccgcctctcttcagaagagtgatgggaagttcaccaatcagaatgtagctttgtggcccaggaaaggaccagagtccttgaagcggtaggaaatccctaggaaggtcccttaaatacttatgcccagatgagctgcccttcttcctatccccgtatgtcgagaggttgacgagacaggaaagccaggaagatgactccgtgtggcagaagagaatggagtccaaagggccaactttcacagagatttctgccgcagtctagcgtggctgtgttctttcacgcgatggtgacttcggagagatcagagggagatgtgcaatagcatgagccccgctcctggcccgggtcctggaaaggttgtggttgtttggtggctttggctgataatgtttccacgcaaacagatattgctttcatgatggctgttctcatttcagttctgataatcgagacgctgtgctcccaggcgctctgcctccccttaactcttcaggagcaccccctcccctgtaatactcctaagtgtatcgtgcctcacttacggttactgcaacacatttgatggaacacactgtctccttta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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