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2024-03-29 07:22:53, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       NM_145767               2403 bp    mRNA    linear   ROD 20-MAR-2023
DEFINITION  Rattus norvegicus dorsal root ganglia homeobox (Drgx), mRNA.
ACCESSION   NM_145767
VERSION     NM_145767.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2403)
  AUTHORS   Ito T, Sakai A, Maruyama M, Miyagawa Y, Okada T, Fukayama H and
            Suzuki H.
  TITLE     Dorsal Root Ganglia Homeobox downregulation in primary sensory
            neurons contributes to neuropathic pain in rats
  JOURNAL   Mol Pain 16, 1744806920904462 (2020)
   PUBMED   32000573
  REMARK    GeneRIF: Dorsal Root Ganglia Homeobox downregulation in primary
            sensory neurons contributes to neuropathic pain in rats.
REFERENCE   2  (bases 1 to 2403)
  AUTHORS   Rebelo S, Chen ZF, Anderson DJ and Lima D.
  TITLE     Involvement of DRG11 in the development of the primary afferent
            nociceptive system
  JOURNAL   Mol Cell Neurosci 33 (3), 236-246 (2006)
   PUBMED   16978876
REFERENCE   3  (bases 1 to 2403)
  AUTHORS   Ding YQ, Yin J, Kania A, Zhao ZQ, Johnson RL and Chen ZF.
  TITLE     Lmx1b controls the differentiation and migration of the superficial
            dorsal horn neurons of the spinal cord
  JOURNAL   Development 131 (15), 3693-3703 (2004)
   PUBMED   15229182
  REMARK    Erratum:[Development. 2009 Jun;136(11):1961]
REFERENCE   4  (bases 1 to 2403)
  AUTHORS   Samad TA, Srinivasan A, Karchewski LA, Jeong SJ, Campagna JA, Ji
            RR, Fabrizio DA, Zhang Y, Lin HY, Bell E and Woolf CJ.
  TITLE     DRAGON: a member of the repulsive guidance molecule-related family
            of neuronal- and muscle-expressed membrane proteins is regulated by
            DRG11 and has neuronal adhesive properties
  JOURNAL   J Neurosci 24 (8), 2027-2036 (2004)
   PUBMED   14985445
REFERENCE   5  (bases 1 to 2403)
  AUTHORS   Ding YQ, Yin J, Xu HM, Jacquin MF and Chen ZF.
  TITLE     Formation of whisker-related principal sensory nucleus-based
            lemniscal pathway requires a paired homeodomain transcription
            factor, Drg11
  JOURNAL   J Neurosci 23 (19), 7246-7254 (2003)
   PUBMED   12917357
REFERENCE   6  (bases 1 to 2403)
  AUTHORS   Chen ZF, Rebelo S, White F, Malmberg AB, Baba H, Lima D, Woolf CJ,
            Basbaum AI and Anderson DJ.
  TITLE     The paired homeodomain protein DRG11 is required for the projection
            of cutaneous sensory afferent fibers to the dorsal spinal cord
  JOURNAL   Neuron 31 (1), 59-73 (2001)
   PUBMED   11498051
REFERENCE   7  (bases 1 to 2403)
  AUTHORS   Saito T, Greenwood A, Sun Q and Anderson DJ.
  TITLE     Identification by differential RT-PCR of a novel paired homeodomain
            protein specifically expressed in sensory neurons and a subset of
            their CNS targets
  JOURNAL   Mol Cell Neurosci 6 (3), 280-292 (1995)
   PUBMED   7496632
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JACYVU010000273.1.
            
            On Nov 27, 2020 this sequence version replaced NM_145767.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: U29174.1 [ECO:0000332]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-193               JACYVU010000273.1  7854849-7855041
            194-312             JACYVU010000273.1  7855270-7855388
            313-410             JACYVU010000273.1  7859257-7859354
            411-512             JACYVU010000273.1  7860489-7860590
            513-691             JACYVU010000273.1  7863331-7863509
            692-804             JACYVU010000273.1  7863595-7863707
            805-2403            JACYVU010000273.1  7882806-7884404
FEATURES             Location/Qualifiers
     source          1..2403
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16p16"
     gene            1..2403
                     /gene="Drgx"
                     /gene_synonym="Drg11; Prrxl1"
                     /note="dorsal root ganglia homeobox"
                     /db_xref="GeneID:252880"
                     /db_xref="RGD:628616"
     exon            1..193
                     /gene="Drgx"
                     /gene_synonym="Drg11; Prrxl1"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    162..164
                     /gene="Drgx"
                     /gene_synonym="Drg11; Prrxl1"
                     /note="upstream in-frame stop codon"
     exon            194..312
                     /gene="Drgx"
                     /gene_synonym="Drg11; Prrxl1"
                     /inference="alignment:Splign:2.1.0"
     CDS             279..1070
                     /gene="Drgx"
                     /gene_synonym="Drg11; Prrxl1"
                     /note="homeobox protein DRG11; dorsal root ganglion 11;
                     paired-related homeobox protein-like 1; paired-like
                     homeodomain trancription factor Drg11"
                     /codon_start=1
                     /product="dorsal root ganglia homeobox protein"
                     /protein_id="NP_665710.2"
                     /db_xref="GeneID:252880"
                     /db_xref="RGD:628616"
                     /translation="
MFYFHCPPQLEGTAPFGNHSTGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTERGASDQEPGAKEPMAEVTPPPVRNINSPPPGDQARGKKEALEAQQSLGRTVGPAGPFFPSCLPGTLLNTATYAQALSHVASLKGGPLCSCCVPDPMGLSFLPTYGCQSNRTASVAALRMKAREHSEAVLQSANLLPSTSSSPGPASKQVPPEGSQDKPSPTKEQSEGEKSV"
     misc_feature    order(378..392,396..398,447..449,465..467,504..506,
                     510..515,522..527,531..539,543..548)
                     /gene="Drgx"
                     /gene_synonym="Drg11; Prrxl1"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(384..386,393..395,513..515,522..527,534..536)
                     /gene="Drgx"
                     /gene_synonym="Drg11; Prrxl1"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    387..545
                     /gene="Drgx"
                     /gene_synonym="Drg11; Prrxl1"
                     /note="Homeobox domain; Region: Homeobox; pfam00046"
                     /db_xref="CDD:425441"
     misc_feature    540..683
                     /gene="Drgx"
                     /gene_synonym="Drg11; Prrxl1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q62798.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    879..932
                     /gene="Drgx"
                     /gene_synonym="Drg11; Prrxl1"
                     /note="OAR domain; Region: OAR; pfam03826"
                     /db_xref="CDD:427530"
     misc_feature    888..929
                     /gene="Drgx"
                     /gene_synonym="Drg11; Prrxl1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q62798.1);
                     Region: OAR.
                     /evidence=ECO:0000255|PROSITE-ProRule:PRU00138"
     misc_feature    933..1067
                     /gene="Drgx"
                     /gene_synonym="Drg11; Prrxl1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q62798.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            313..410
                     /gene="Drgx"
                     /gene_synonym="Drg11; Prrxl1"
                     /inference="alignment:Splign:2.1.0"
     exon            411..512
                     /gene="Drgx"
                     /gene_synonym="Drg11; Prrxl1"
                     /inference="alignment:Splign:2.1.0"
     exon            513..691
                     /gene="Drgx"
                     /gene_synonym="Drg11; Prrxl1"
                     /inference="alignment:Splign:2.1.0"
     exon            692..804
                     /gene="Drgx"
                     /gene_synonym="Drg11; Prrxl1"
                     /inference="alignment:Splign:2.1.0"
     exon            805..2403
                     /gene="Drgx"
                     /gene_synonym="Drg11; Prrxl1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
gcagaggtaggcagggttcccgagccgctctcccggctccctgctctgggccttggggctccaccggcttcttggcccgagctgctgcgcgtgcagatggccttgcgcgatcgccggaccccgctgcggtggccaagtgcagggcttgtggctgggacccctgagaaccaggagccagactgtgctcagcttgccaggccggagccacgcacgggcacaagtctgtcaggccgccatcagtcctggtccagccgtcagggcccatccgaccgtcggcgatgttttatttccactgcccgccacagctagagggcacagcgccttttggtaaccactctacgggggattttgatgatgggtttcttagaagaaaacagcgcagaaatcggacaaccttcactcttcagcagttggaagctctggaggcagtctttgcccaaacacactacccagatgtcttcaccagagaagagctagccatgaaaataaacctcacagaagccagagtgcaggtttggttccagaaccgaagagccaagtggaggaagacagagagaggggcctctgaccaggaaccaggggctaaggaacccatggcagaggtgacaccacccccagtgaggaacatcaactctccacccccaggggaccaggcccggggcaagaaggaggccctggaggcccagcagagcctgggacgcacagtgggccccgccgggcctttcttcccctcctgcttgccagggaccctcctgaacacagccacttatgcccaggccctgtcccatgtggcatctctgaaagggggcccactgtgctcttgctgcgtcccagaccctatggggctctccttcctccccacttacggttgccagagtaaccgcacagccagcgtggctgccctgcgcatgaaggcccgcgagcattcagaagcggtcctgcagtctgccaaccttctgccgtccaccagcagcagccccggccctgcctccaagcaggtgcctccagaaggcagccaggacaagccctccccaacgaaggaacagagcgagggagagaagagcgtatgagggtccggagaacccagctgggagccctgcccacccctgcttctctcagcctcagccctgccagcctctgaaccacaaggagtagccacctcctcatggatctgacagggcaaacgggacctgcaagctggttgagacctgaagagtccctctagaattctgctggtaggctgtgttgttctcgcttttcctttggtgacattttccgatggctcttagtgactctggacactgctctgtgatgaggtccctgttttttgctttttgttttgtctcttttttttttttgttttgttttgttttattttccaggccaagcagccttggagcaaagcagattagtttattccaccatccttcttgagatatctgggaaggtcttgtcaattccaaggactgtggcaaggatcatccgtgaaagatgccaagaagtgacatctcatgacaggaaatgagacgggcactcccatattgcttaagaaccacagaactggtggactatcagccagttctcactcccttcagccaggactggcatcggcctcctttgtcttgtttaaaggaattagctgaggttttggctaggaagtgacaagatatgggctgaagacattgtggtcctgaccctagcagatctccctgggcacatctgacctggtccagtcaggcaggttgtcagttcggggatgggggctgctctgctgattctgtgtgtgggttccctgcaattagagtgttcacttgcaggccccgcctctcttcagaagagtgatgggaagttcaccaatcagaatgtagctttgtggcccaggaaaggaccagagtccttgaagcggtaggaaatccctaggaaggtcccttaaatacttatgcccagatgagctgcccttcttcctatccccgtatgtcgagaggttgacgagacaggaaagccaggaagatgactccgtgtggcagaagagaatggagtccaaagggccaactttcacagagatttctgccgcagtctagcgtggctgtgttctttcacgcgatggtgacttcggagagatcagagggagatgtgcaatagcatgagccccgctcctggcccgggtcctggaaaggttgtggttgtttggtggctttggctgataatgtttccacgcaaacagatattgctttcatgatggctgttctcatttcagttctgataatcgagacgctgtgctcccaggcgctctgcctccccttaactcttcaggagcaccccctcccctgtaatactcctaagtgtatcgtgcctcacttacggttactgcaacacatttgatggaacacactgtctccttta
//

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]