2024-03-29 00:46:21, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_031699 3223 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus claudin 1 (Cldn1), mRNA. ACCESSION NM_031699 VERSION NM_031699.3 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 3223) AUTHORS Ma T, Gu J, Zhao Y, Li S, Zou D and Ge D. TITLE EZH2-mediated suppression of CLDN1 leads to barrier dysfunction in PPI-refractory gastroesophageal reflux disease JOURNAL Dig Liver Dis 54 (6), 776-783 (2022) PUBMED 34789399 REMARK GeneRIF: EZH2-mediated suppression of CLDN1 leads to barrier dysfunction in PPI-refractory gastroesophageal reflux disease. REFERENCE 2 (bases 1 to 3223) AUTHORS Xie Y, Tan J, Qin Y, Cao Y, Wang Y, Li A, Wang Z, Qiao Z and Yan Z. TITLE MiR-3571 modulates the proliferation and migration of vascular smooth muscle cells by targeting claudin 1 JOURNAL Int J Med Sci 19 (3), 511-524 (2022) PUBMED 35370461 REMARK GeneRIF: MiR-3571 modulates the proliferation and migration of vascular smooth muscle cells by targeting claudin 1. Publication Status: Online-Only REFERENCE 3 (bases 1 to 3223) AUTHORS Ben-Kraiem A, Sauer RS, Norwig C, Popp M, Bettenhausen AL, Atalla MS, Brack A, Blum R, Doppler K and Rittner HL. TITLE Selective blood-nerve barrier leakiness with claudin-1 and vessel-associated macrophage loss in diabetic polyneuropathy JOURNAL J Mol Med (Berl) 99 (9), 1237-1250 (2021) PUBMED 34018017 REMARK GeneRIF: Selective blood-nerve barrier leakiness with claudin-1 and vessel-associated macrophage loss in diabetic polyneuropathy. REFERENCE 4 (bases 1 to 3223) AUTHORS Chen M, Hou P, Zhou M, Ren Q, Wang X, Huang L, Hui S, Yi L and Mi M. TITLE Resveratrol attenuates high-fat diet-induced non-alcoholic steatohepatitis by maintaining gut barrier integrity and inhibiting gut inflammation through regulation of the endocannabinoid system JOURNAL Clin Nutr 39 (4), 1264-1275 (2020) PUBMED 31189495 REFERENCE 5 (bases 1 to 3223) AUTHORS Berndt P, Winkler L, Cording J, Breitkreuz-Korff O, Rex A, Dithmer S, Rausch V, Blasig R, Richter M, Sporbert A, Wolburg H, Blasig IE and Haseloff RF. TITLE Tight junction proteins at the blood-brain barrier: far more than claudin-5 JOURNAL Cell Mol Life Sci 76 (10), 1987-2002 (2019) PUBMED 30734065 REFERENCE 6 (bases 1 to 3223) AUTHORS Duffy HS, John GR, Lee SC, Brosnan CF and Spray DC. TITLE Reciprocal regulation of the junctional proteins claudin-1 and connexin43 by interleukin-1beta in primary human fetal astrocytes JOURNAL J Neurosci 20 (23), RC114 (2000) PUBMED 11090614 REFERENCE 7 (bases 1 to 3223) AUTHORS Lippoldt A, Liebner S, Andbjer B, Kalbacher H, Wolburg H, Haller H and Fuxe K. TITLE Organization of choroid plexus epithelial and endothelial cell tight junctions and regulation of claudin-1, -2 and -5 expression by protein kinase C JOURNAL Neuroreport 11 (7), 1427-1431 (2000) PUBMED 10841351 REFERENCE 8 (bases 1 to 3223) AUTHORS Furuse M, Sasaki H and Tsukita S. TITLE Manner of interaction of heterogeneous claudin species within and between tight junction strands JOURNAL J Cell Biol 147 (4), 891-903 (1999) PUBMED 10562289 REFERENCE 9 (bases 1 to 3223) AUTHORS Kubota K, Furuse M, Sasaki H, Sonoda N, Fujita K, Nagafuchi A and Tsukita S. TITLE Ca(2+)-independent cell-adhesion activity of claudins, a family of integral membrane proteins localized at tight junctions JOURNAL Curr Biol 9 (18), 1035-1038 (1999) PUBMED 10508613 REFERENCE 10 (bases 1 to 3223) AUTHORS Furuse M, Fujita K, Hiiragi T, Fujimoto K and Tsukita S. TITLE Claudin-1 and -2: novel integral membrane proteins localizing at tight junctions with no sequence similarity to occludin JOURNAL J Cell Biol 141 (7), 1539-1550 (1998) PUBMED 9647647 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from JACYVU010000222.1. On Nov 27, 2020 this sequence version replaced NM_031699.2. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BC061992.1, FQ220868.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA5756307, SAMEA5760386 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-402 JACYVU010000222.1 53731343-53731744 403-567 JACYVU010000222.1 53740083-53740247 568-652 JACYVU010000222.1 53742243-53742327 653-3223 JACYVU010000222.1 53743932-53746502 FEATURES Location/Qualifiers source 1..3223 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="11" /map="11q22" gene 1..3223 /gene="Cldn1" /note="claudin 1" /db_xref="GeneID:65129" /db_xref="RGD:68422" exon 1..402 /gene="Cldn1" /inference="alignment:Splign:2.1.0" CDS 180..815 /gene="Cldn1" /codon_start=1 /product="claudin-1" /protein_id="NP_113887.3" /db_xref="GeneID:65129" /db_xref="RGD:68422" /translation="
MANAGLQLLGFILASLGWIGSIVSTALPQWKIYSYAGDNIVTAQAIYEGLWMSCVSQSTGQIQCKVFDSLLNLNSTLQATRALMVIGILLGLIAIFVSTIGMKCMRCLEDDEVQKMWMAVIGGIIFVISGLATLVATAWYGNRIVQEFYDPMTPVNARYEFGQALFTGWAAASLCLLGGALLSCSCPRKTTSYPTPRPYPKPTPSSGKDYV"
misc_feature 192..725 /gene="Cldn1" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; pfam00822" /db_xref="CDD:395662" misc_feature 201..263 /gene="Cldn1" /note="propagated from UniProtKB/Swiss-Prot (P56745.2); transmembrane region" misc_feature 423..485 /gene="Cldn1" /note="propagated from UniProtKB/Swiss-Prot (P56745.2); transmembrane region" misc_feature 525..587 /gene="Cldn1" /note="propagated from UniProtKB/Swiss-Prot (P56745.2); transmembrane region" misc_feature 669..731 /gene="Cldn1" /note="propagated from UniProtKB/Swiss-Prot (P56745.2); transmembrane region" misc_feature 747..812 /gene="Cldn1" /note="propagated from UniProtKB/Swiss-Prot (P56745.2); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 807..812 /gene="Cldn1" /note="propagated from UniProtKB/Swiss-Prot (P56745.2); Region: Interactions with TJP1, TJP2, TJP3 and PATJ. /evidence=ECO:0000250" exon 403..567 /gene="Cldn1" /inference="alignment:Splign:2.1.0" exon 568..652 /gene="Cldn1" /inference="alignment:Splign:2.1.0" exon 653..3223 /gene="Cldn1" /inference="alignment:Splign:2.1.0" ORIGIN
cacttccagactccaccaccgacccggaccagaagccaggagcctcgcccgcagccgcacagggagcaggggtatcagcgctaacctcctggctgagactccatcaccttcggggagcccaagcgcgcactttgcaaactccgctttctgcacctgccactgagcctcagaaaagagccatggccaacgcggggttgcagcttctgggtttcatcctggcttcgctgggatggatcggctctatcgtcagcactgccctgccccaatggaagatttactcctatgctggggacaacatcgtgactgctcaggccatctacgagggactgtggatgtcctgcgtttcgcaaagcaccgggcagatacagtgcaaagtcttcgactccttgctgaatctgaatagtactttgcaggcaaccagagccttgatggtaattggcatcctgctggggctgatcgcaatctttgtgtccaccattggcatgaagtgcatgaggtgcttagaagatgatgaagtgcaaaagatgtggatggctgtcatcgggggcataatatttgtaatttcaggtctggcgacattagtggccacagcatggtatggaaatagaattgttcaagaattctatgaccccatgacccctgtcaatgccaggtatgaatttggccaggctctctttactggctgggctgctgcctccctctgcctcctgggaggtgccctactttcctgctcctgtccccggaaaacaacctcttacccaacaccacggccttatcccaagccaacaccttctagtgggaaagactacgtgtgacagcggcgaaggaagagatcctcctggagcgaatacaaaatggacattgagactagcattgacattaaggcctcaaactgttgactatggttatctaaactgtggtagaacaaaagcaagcatatttttatacgtccccatggctatgagggtcttggctgtgccttaccatctttcctgagtacaggagggaagccttttgcctttgaactgctgcttgccactgagtgatgacactcaaatgggcgaagggtgctccttaagtgtgtatagatatgtacatatacatattttctattaaaaatagacagctagcaatctcttattctccccatattgtaccagcatactttaaatgactataaaatatatacaattccacattgattaaataagctttctggtgtatttttcttttctctatgaacataagtgatcagtcaaatattaccccttcgatcagcatttagtatctttgccataagaccagacttccttacgaactcagactatgttcttttttttttttccattatgtcttctttacatcaaaatatttgttctccatgttttcttttactctaacagctgctttttcagattgttattctgaggcttgattctaactcctgaatctaataatgaactttgagcccatatgttaaaacttaaaaccagtaagaatctcatactgtgtttctgagctgtgggggccaatgttccagagagatgatgtttctccactgacctttcccacacggtccctgcactttggtctgcagctggcttgtttgctttaaaaatatttgtttccctgagtggctaagctgctaaccctgtggttgaaacagttttattgactgcatttttcaggtactaattttccattccagatcctgcaaactgcagctctcctcttccctcctcagctatcttgttttcccacgtataattatcctacagtttagttctttgcagataggtgtggtccatttatctacacaaactgctagacttgccagagtgataatctagtgacaaatattctctctgtagccgtggacaatttacaatccttatacctcgttttcccatctgtcaaattgggataattacacttaaacagctggtagaggtaatgcgagtattaattagttgatatgactctcattctttgaacatgaaatatgcctaagtagtgtttttccttgctcaattagcagttctgaagtcactgaataaaatctacacacatgcctccaatgccgttctgtatctctctttgtcatgagttcatttcctcccatctagctgtgcatggcctgtcattggtgctgtttcattttgatcattctcatctgtagcaaaggcccttcagcagagcaaggtgttgtaatacaaagggtgttgccattgccatgggtagacctggatttgcatcttggtgctatcacttaattactgaggttgggcagaggccctcgattgccctaaatgtattgctccatctagacaacgggttcattaacttctgccatgcctatgtcgcatgagtcaagagggacgcaggcaaacatggttttatgttggaaaacaacatgtcactctataaattaaggaatttaagttaatgggttttgtctttatttttcaaacaataggaaagagaaacatgttaaatagtttctttccttaagaactctcaaatgaggagttccaaagcttactaagttaaactgatcttaagtctttaaggctttcggttgtgagtcagtgtttcagcctatggtccacgctggccaagaactcctgtgccacacaaacatccttctgcctcagcctcacaactgttatgatgacaggaatgagccccatcccactgttacaccctagtttcagaagtttggcctggtacttctattgctaagcaaatgcaatggcggaaagtgacagtgtatggatactctaaaagcataaagcgtgctctttgtgaagtgatactttcaaagtctaatggaagctggcagttctaggagaggttaagaattataacttatggtaaaaccacatggatgaagttatagaaagaatgaagtcttatgtgaatttgtactatgtaagtttgactgtatttagatgtgtaaagtaatcatgcaaagatcttttgccacaattactgtgcctaatgtgtaatgtaaacacatagaaataacacttgctaaactacacaaaattctatattccaaaataatcccatagaagtcttatgtcagaacttacctagatttgatatttttataccctaataccaaacctggaaacagatcaattgatatttgggggctgaggtgggaatttgtataagtactactctttttcaataaattgttggttttttttaattaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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