2024-05-04 22:59:05, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_012581 1661 bp mRNA linear ROD 24-NOV-2023 DEFINITION Rattus norvegicus homeobox A2 (Hoxa2), mRNA. ACCESSION NM_012581 VERSION NM_012581.3 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 1661) AUTHORS Wang M, Doucette JR and Nazarali AJ. TITLE Conditional Tet-regulated over-expression of Hoxa2 in CG4 cells increases their proliferation and delays their differentiation into oligodendrocyte-like cells expressing myelin basic protein JOURNAL Cell Mol Neurobiol 31 (6), 875-886 (2011) PUBMED 21479584 REMARK GeneRIF: The impact of Hoxa2 over-expression on the proliferation and differentiation of CG4-SHoxa2 cells was investigated. REFERENCE 2 (bases 1 to 1661) AUTHORS Alasti F, Sadeghi A, Sanati MH, Farhadi M, Stollar E, Somers T and Van Camp G. TITLE A mutation in HOXA2 is responsible for autosomal-recessive microtia in an Iranian family JOURNAL Am J Hum Genet 82 (4), 982-991 (2008) PUBMED 18394579 REMARK Erratum:[Am J Hum Genet. 2008 Sep;83(3):424] REFERENCE 3 (bases 1 to 1661) AUTHORS Florea L, Di Francesco V, Miller J, Turner R, Yao A, Harris M, Walenz B, Mobarry C, Merkulov GV, Charlab R, Dew I, Deng Z, Istrail S, Li P and Sutton G. TITLE Gene and alternative splicing annotation with AIR JOURNAL Genome Res 15 (1), 54-66 (2005) PUBMED 15632090 REFERENCE 4 (bases 1 to 1661) AUTHORS Gorski DH, LePage DF and Walsh K. TITLE Cloning and sequence analysis of homeobox transcription factor cDNAs with an inosine-containing probe JOURNAL Biotechniques 16 (5), 856-858 (1994) PUBMED 7915120 REFERENCE 5 (bases 1 to 1661) AUTHORS Patel CV, Gorski DH, LePage DF, Lincecum J and Walsh K. TITLE Molecular cloning of a homeobox transcription factor from adult aortic smooth muscle JOURNAL J Biol Chem 267 (36), 26085-26090 (1992) PUBMED 1361191 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JACYVU010000142.1. On Mar 27, 2023 this sequence version replaced NM_012581.2. ##Evidence-Data-START## Transcript exon combination :: M91802.1, AW251417.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN16676784, SAMN16676806 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on conservation, expression, longest protein ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-563 JACYVU010000142.1 4497909-4498471 c 564-1661 JACYVU010000142.1 4496168-4497265 c FEATURES Location/Qualifiers source 1..1661 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="4" /map="4q24" gene 1..1661 /gene="Hoxa2" /gene_synonym="hox-1.11; Hoxa-2; Hoxa11; Hoxa2l; RATHOX111A" /note="homeobox A2" /db_xref="GeneID:103690123" /db_xref="RGD:11468112" exon 1..563 /gene="Hoxa2" /gene_synonym="hox-1.11; Hoxa-2; Hoxa11; Hoxa2l; RATHOX111A" /inference="alignment:Splign:2.1.0" misc_feature 80..82 /gene="Hoxa2" /gene_synonym="hox-1.11; Hoxa-2; Hoxa11; Hoxa2l; RATHOX111A" /note="upstream in-frame stop codon" CDS 185..1303 /gene="Hoxa2" /gene_synonym="hox-1.11; Hoxa-2; Hoxa11; Hoxa2l; RATHOX111A" /note="Homeobox gene A11; Homeobox gene A2; homeobox protein Hox-1.11; homeo box A2" /codon_start=1 /product="homeobox protein Hox-A2" /protein_id="NP_036713.2" /db_xref="GeneID:103690123" /db_xref="RGD:11468112" /translation="
MNYEFEREIGFINSQPSLAECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLNPGSHPRQSAGAGGRPKSSPAGSRGSPVPARALQPPEYPWMKEKKAAKKTALPPAAASTGPACLGHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKFKNLEDSDKVEEDEEEKSLFEQALSVSGALLEREGYTFQQNALSQQQAPNGHNGDSQTFPVSPLTSNEKNLKHFQHQSPTVPNCLSTMGQNCGAGLNNDSPEALEVPSLQDFNVFSTDSCLQLSDALSPSLPGSLDSPVDISADSFDFFTDTLTTIDLQHLNY"
misc_feature 308..472 /gene="Hoxa2" /gene_synonym="hox-1.11; Hoxa-2; Hoxa11; Hoxa2l; RATHOX111A" /note="propagated from UniProtKB/Swiss-Prot (P31246.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 470..487 /gene="Hoxa2" /gene_synonym="hox-1.11; Hoxa-2; Hoxa11; Hoxa2l; RATHOX111A" /note="propagated from UniProtKB/Swiss-Prot (P31246.1); Region: Antp-type hexapeptide" misc_feature order(602..616,620..622,671..673,689..691,728..730, 734..739,746..751,755..763,767..772) /gene="Hoxa2" /gene_synonym="hox-1.11; Hoxa-2; Hoxa11; Hoxa2l; RATHOX111A" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(608..610,617..619,737..739,746..751,758..760) /gene="Hoxa2" /gene_synonym="hox-1.11; Hoxa-2; Hoxa11; Hoxa2l; RATHOX111A" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 611..769 /gene="Hoxa2" /gene_synonym="hox-1.11; Hoxa-2; Hoxa11; Hoxa2l; RATHOX111A" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" misc_feature 764..859 /gene="Hoxa2" /gene_synonym="hox-1.11; Hoxa-2; Hoxa11; Hoxa2l; RATHOX111A" /note="propagated from UniProtKB/Swiss-Prot (P31246.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" exon 564..1661 /gene="Hoxa2" /gene_synonym="hox-1.11; Hoxa-2; Hoxa11; Hoxa2l; RATHOX111A" /inference="alignment:Splign:2.1.0" misc_feature 596..778 /gene="Hoxa2" /gene_synonym="hox-1.11; Hoxa-2; Hoxa11; Hoxa2l; RATHOX111A" /note="homeobox" ORIGIN
agtttaatagtagcgcggtccccatacggctgtaatcagtgaattagaaaaaaaacaccccagcagcgatcttctatgatagatttttttttccttcgctctcgcctttttcctgggccttgcccccccaaagcccctccaaaagagggaacttttcctccgagggggctccaaggagaaggccatgaattacgaatttgagcgagagattggttttatcaatagccagccgtcgctcgctgagtgcctgacatcttttccccctgtcgctgatacatttcaaagttcatcaatcaagacctcgacgctttcacactcgacactgattcctcctccttttgagcagaccattcccagcctgaacccgggcagtcaccctcgccaaagcgctggcgctggcggccgccccaagtcgagccccgcgggcagtcgcggcagcccggtgcccgcccgcgccctgcagccgcctgagtacccctggatgaaggagaagaaggcggccaagaaaaccgcgctgccgcccgccgccgcctccacgggccctgcctgcctcggccacaaagaatccctggaaatagccgatggcagcggtgggggatccaggcgtctgagaactgcttacaccaacactcagcttttggaactggaaaaggaatttcatttcaacaagtacctctgcagaccccggagggtggaaatcgccgcgctgctggatttgaccgagagacaagtgaaagtgtggtttcagaaccggaggatgaagcataagaggcaaacccagtgcaaggagaaccaaaacagcgaagggaaatttaaaaacctggaggattcggacaaagtggaggaagacgaggaagagaagtcactctttgagcaagccctcagtgtctccggggcccttctggagagggaaggttacacttttcagcaaaacgcgctctctcaacagcaggctcccaatggacacaatggcgactcccaaactttcccagtttcgcctttaaccagcaatgagaaaaatttgaaacattttcagcaccagtcacccactgttcctaactgcttgtcaacaatgggccagaactgtggagctggcctaaacaatgacagtcccgaggccctcgaggtcccctctttgcaggactttaatgttttctccacagattcctgcctgcagctttcagacgcactgtcgcccagtttgccaggctccctggacagtcctgtagatatttcagctgacagctttgacttttttacagacacactcaccacaatcgacctacagcatctgaattactaagaacattaaagcaaaagaaagcttcacaaaacaaaacgcctttggccaggtggctttgccttcttttattccgggagttgattttcgttctattctcttctcgatctacccctgttctcttaaatgttcaggactttctgttttacacccagtttgaaagccatctcttccaaatgatgttggcgttctaagtgttttacaccgaacccaacaagcttctatgtgattttcctgaaaacaaaacacgaggcctgcaagaaagtgaccataagttgtcttgtcactttctttttatttttgtaccacattaggatgcattgtcatgcgtatttttggtagaataaactctcctctgcta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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