LOCUS       NM_001419547           12584 bp    mRNA    linear   ROD 07-OCT-2023
DEFINITION  Rattus norvegicus RIKEN cDNA D430041D05 gene like (D430041D05Rikl),
            mRNA.
ACCESSION   NM_001419547 XM_008762074
VERSION     NM_001419547.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JACYVU010000118.1.
            
            On Apr 7, 2023 this sequence version replaced XM_008762074.3.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA5760383, SAMEA5760384
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation, expression,
                                         longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-683               JACYVU010000118.1  14648725-14649407   c
            684-3227            JACYVU010000118.1  14493520-14496063   c
            3228-3839           JACYVU010000118.1  14492510-14493121   c
            3840-3955           JACYVU010000118.1  14490099-14490214   c
            3956-4175           JACYVU010000118.1  14485904-14486123   c
            4176-4309           JACYVU010000118.1  14484987-14485120   c
            4310-4472           JACYVU010000118.1  14477581-14477743   c
            4473-4532           JACYVU010000118.1  14475470-14475529   c
            4533-4684           JACYVU010000118.1  14470108-14470259   c
            4685-4856           JACYVU010000118.1  14466655-14466826   c
            4857-5020           JACYVU010000118.1  14457038-14457201   c
            5021-5205           JACYVU010000118.1  14449684-14449868   c
            5206-5333           JACYVU010000118.1  14442876-14443003   c
            5334-5515           JACYVU010000118.1  14438778-14438959   c
            5516-5733           JACYVU010000118.1  14435166-14435383   c
            5734-5863           JACYVU010000118.1  14427885-14428014   c
            5864-6214           JACYVU010000118.1  14397076-14397426   c
            6215-6312           JACYVU010000118.1  14387368-14387465   c
            6313-6461           JACYVU010000118.1  14385577-14385725   c
            6462-6613           JACYVU010000118.1  14383402-14383553   c
            6614-12584          JACYVU010000118.1  14373624-14379594   c
FEATURES             Location/Qualifiers
     source          1..12584
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q32"
     gene            1..12584
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /note="RIKEN cDNA D430041D05 gene like"
                     /db_xref="GeneID:100362814"
                     /db_xref="RGD:2323964"
     exon            1..683
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    437..439
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /note="upstream in-frame stop codon"
     CDS             449..6895
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /codon_start=1
                     /product="UPF0606 protein KIAA1549L homolog"
                     /protein_id="NP_001406476.1"
                     /db_xref="GeneID:100362814"
                     /db_xref="RGD:2323964"
                     /translation="

MALQEAKPQGPSKAGPAAREPRDRPREPGLCGAGGIAARCQGVKSSGARGSEDVLPLRPLLLGLLLLAALSGNCRADSGADNLQTHVTPTSESFPLGKLLPISPTWPFLEVKSSSAADRIKNVLGQPPDNTTLTQLSQTPLPKAHRKTRAHVDFSSSLYQGSGHSASLDLAKDPTETLVQTRPEGGREAADMSGLPRTSMLPPLPTAPSATSSAISPSQPLVGMPSLSKHPLRSDSFLFLPPPPSSSLVPDSLHSITPPKPVERPTKVPLFPQTTPADSSSGQSPVHALNPFFHKTNLFSSRNAQTFIGIPRLDFSTSLTKQYSKLSPSENPRLAASSTPGVLSSIAELDHLSLPSLAPGGLPGGTSSWSMLEEASSPVSTQPVHTAGPVRGHSAVSFPIYLRTAAASHEAWAPRFQTAESVMTSRELAPVPPTNSSANWPHLSEVPENSRKPTLSPENKPSSLVPPPPQPLTTLSQGQVVHSEAASASPQKGAGAPPSPLTVLQPSKDQAHPAPAPEAPTSQEDDRDEYLPDAATHLLSSKLPDLPPTIWTFPQQKEGKTAAIFWTNEKANGTVSLWALPTKEAPSRRAVNDSTSDFNTGRMSPLIMTALRTDLSPPGSFPSPMPTTQAPSPGVSSTKLGTLAAVTSRSELPASASKQVTALSSSTGVHDFPTMGGTRKPAATDVFQGFLSAETAPLATQSSISDLQQQTNHDVNTHTINSTHWEPHPASAALPSGTTSAANALQPQNFKEIAGQLVAADGFNLQTAALSPRPSQPPQPSEEAAVESHTDLRLAGKHAGDFDPEMVHYHASTSQHPMSQLPIRPAHPFWPTWPSLASAASLHQMLSDGTDTGPQISSDIYLSPGESGSPQFQSVLEDRSSTASPSVSTGAFSRTPSKVLRTSRRPKKWTGAATNTGSLFPGTQKTVETSVSSKGELSATVAAAATTTLFLRKSSPAPLSAALTAKGTGGGGSLAKSSLTTALAKNVTNKAAPGPKVTAGTVHTAFPFTPTYMLARTAHSLSTHTAMQGASGSVSGLLSTTHLPKKPQAMHTGLPNPTRPDTPRASTPRPLTITAALTSLTASVKATRLPSLQTGNTDAAFPAVSTAMVTTGRMASNLDCQMSHKFLVKTVFFLTQRRIQSSESLKLGVTKGLTQALRKAFHQNDVSAHVDILEYSHNVTVGYYATKGRLVYLPAVVMDVLGVYGVSNVTADLKQHAPNLQSVAVLASPWKPQPAGAFQLKTVLQFVSQSDNIQSCRFAQTMEQRLQKAFQDAERKVLGTRSNLTVQIVSTSNASQAVTLVYAVGNQSSFLNGTMASSLLSQLSAELVGFYLTYPPLTIAEPLEYPNLDTSETTRDYWVITVLQGVDNSLVGLHNQSFARVMEQRLAQLFMMSQQQGRRFKRATTLGSYTVQMVKMQRVPGPKDPAELTYYTLYNGKPLLGTAAAKILSTIDSQRMALTLHHVVLLQADPVVKNPPNNLWIIAAVLAPIAVVTIIIIIITAVLCRKNKNDFKPDTMINLPQRAKPVQGFDYAKQHLGQQGADEEVIPVTQETVVLPIPVRDTPQERDTAQDGSTIKTAKSTETRKSRSPSENGSVISNESGKPSSGRCSPQNGMTQQKVTKEESRKRNGTASDEEEGAGLFDSAGKAAADPFDTSSGSVQLIAIKPSALPVVHPASDRGPESSAALNGEVSKALKQKSDIEHYRNKLRLKAKRKGYYDFPPVDAGKGLTERKKMYEKAPKEMEHALEPDPELCAPFAESKNRQQMKNSVYRSRQSLNSPSPGETEMDLLVTRERPRRGIRNSGYDTEPEIIEETNVDRVHEPRGYGRARQMKGHSETSTLSSQPSIDEVRQQMHMLLEEAFSLASAGHAGQSRHQEAYGSTQHLPYSEVVTSAPGTMTRPRAGVQWVPTYRPEMYQYSLPRPAYRFSQLPEMVMGSPPPPVPPRTGPVAVASLRRSTSDIGSKTRMAESTGPEATQLHDSASFAQVSRGPVSVTQLDQSALNYSGNTVPAVFAIPAANRPGFTGYFIPTPPPSYRSQAWMSYAGDSELPSQWADSVPLPGYIEAYPRSRYQQSSPSRLPRQYSQPTNLHPSLEQAPVPSAAASQQSLTENEPPDTPLTNISTAALVKAIREEVAKLAKKQTDMFEFQV"

     misc_feature    <2090..>2686
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /note="Herpes virus major outer envelope glycoprotein
                     (BLLF1); Region: Herpes_BLLF1; pfam05109"
                     /db_xref="CDD:282904"
     misc_feature    4136..6052
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /note="Domain of unknown function (DUF3827); Region:
                     DUF3827; pfam12877"
                     /db_xref="CDD:432847"
     exon            684..3227
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            3228..3839
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            3840..3955
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            3956..4175
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            4176..4309
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            4310..4472
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            4473..4532
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            4533..4684
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            4685..4856
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            4857..5020
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            5021..5205
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            5206..5333
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            5334..5515
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            5516..5733
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            5734..5863
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            5864..6214
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            6215..6312
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            6313..6461
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            6462..6613
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
     exon            6614..12584
                     /gene="D430041D05Rikl"
                     /gene_synonym="RGD1310754"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gtcaatgaggcgccgctctgagctgcagtagcattcgcggctggagccggagtccagcgatccagtgaaccgacagggacagagacccgggcgcaggggcggcggcgggcggcacgctgcacgagccaggtccgcgggtccccacgtctcgtagcctcgcgctcgaggtgcagcatccggccccggggaggggaccagggcgccgcccgtcccaccctcgccataccgtgggaacccccatgcaaccccggtacccgcgcgcctgaaaccccggctccgttgagcccgcctccgaccgaggcaggacgagcgagcagctcgcacctcctgcctccctccgactcccgggccatggcccgagatgcccggtgaggaacggtgcgcggagggctgggctcccgggcgcggcgtggaaagaggcagcggcctggatgtatgaacagtccctatggctctgcaggaggcgaagccccagggcccgagcaaagctgggccggcggcgcgggagcccagggatcggccccgggagccagggctctgcggggcgggcgggatcgccgcgcgctgccagggcgtgaagagctccggggcccgcggctccgaggatgtgctgccgctgcggccgctgctgctgggactcttgctgctggctgccctctccgggaactgccgggccgactcgggggcagacaatctacagacacatgtcactccgacctcagagtcctttccccttgggaaattgttaccaatttcaccaacatggcctttcttggaagtcaagtcttcctcagcagcggacagaatcaagaatgtgctgggacagcctcctgacaacacaaccttgacacagctatcccagacacctctgcccaaggcacaccgtaagaccagggctcatgtggacttctcctcatccctttaccaaggaagtggacatagcgcctccctggatcttgccaaggaccccactgagactctggtccaaacaaggcctgaagggggaagagaagcagcggacatgtcaggtttgcctcgcaccagcatgctccccccattacctacagccccatcagccacctcgagtgctatctccccatcacagcccttggtagggatgccgtccctttcgaagcatccgttgaggtcagacagctttctatttctccctccaccaccatcatcttcattggtccccgattcactgcattccatcacccctcctaagcctgtagaacgtcccaccaaagtgcctttgtttccccaaacgacaccagctgactcctcttcaggtcagagcccagttcatgccctaaacccattttttcataaaacaaacctcttctcatccagaaatgcccagactttcataggtatccctcgtctagacttttctacatccttaacaaagcagtactctaagctgtccccatcagagaatccccgcttagcagcttcctcaactcctggggttctgagctccattgcagaactggaccacctgtctctcccttccctagcccctggaggccttccaggtggaacctcctcgtggtccatgttggaagaggcttcgagtcctgtatccacccagccagtccacacagcggggcctgtcagagggcacagtgcagtatcatttcccatttatctgcgcacagcggcagcaagccatgaggcctgggccccacgcttccagactgcagagtcagtgatgaccagcagagagctagcccctgttcctcctacaaatagttctgccaactggccacatttgtcagaagtgccagagaattccagaaagcccacactctccccagaaaacaaaccttcctctttggtacctcctcctcctcagccgctcactacactcagtcaagggcaagtggtccattctgaggcagcttctgcatcaccacagaagggggcaggtgcccctccctccccgcttactgtcctccagcccagtaaggatcaggcccatccagcccctgcaccagaggcacccacgtcccaggaagatgaccgtgacgagtaccttcccgatgcagccacacacctcctctcaagcaaacttcctgatcttccccctacgatttggacatttcctcagcaaaaggagggcaagacagcagccattttctggacaaatgaaaaggcaaacgggacagtttctctgtgggctcttccaactaaagaggctcctagtcgtcgtgcagtgaatgactccacctctgattttaacacaggtcgtatgtcacctctcatcatgacagcactaagaacagacctctctcctccagggtcatttccatcacccatgcccaccacacaggccccttctcccggcgtttccagcaccaagctggggactctcgcagctgtcacaagccggtcagagttgccagcttcagcttccaaacaggtgacagcactttcctcctccaccggtgtccatgatttcccaacaatgggaggcacaagaaagccagcagccacagatgttttccagggctttctttcagcagaaactgcaccgctcgccacacagtcatcgatatctgacttgcagcagcagacgaatcacgatgtaaacactcatacaattaactccacacactgggaacctcatccagcttcggcggctcttcccagtggtacgacttcagctgccaatgcattacagcctcagaatttcaaagagattgctggacagctggtggctgcagacggctttaacctccagactgcagccctcagtccccgtcccagtcagcctcctcaaccgtcagaagaagctgcagtcgaaagccacacagacctccggctcgcaggcaagcatgccggagactttgacccagaaatggttcattaccacgcatctacaagccaacatcctatgtcacagctgcccatccggccagcccatcctttttggccgacctggccgagtttagcttctgcagctagcttgcaccaaatgctttcagacggaacagacacaggaccacaaatttccagtgacatctatctatcgccaggggaaagcggctccccacaattccagagtgtcctggaagaccgctcatctacagcctcaccttccgtatcaaccggtgccttttccaggaccccttccaaagtgctgcgaacctctcggcgccccaagaaatggacaggtgcagccactaacacgggtagtttgtttcctggtacccagaaaacagtggaaacctcagtgtcctccaagggagaactgtcagccaccgtagcagcagccgccaccaccacactgtttctgaggaaatcaagtccagcgccactgtctgcagcccttactgctaagggcactggcggtggcggcagcttagccaagagcagtctgaccactgctctagctaaaaatgtcaccaacaaggcagcaccaggcccaaaggtgacagcagggacagtccacacagccttcccattcacaccaacctacatgcttgcccggacagcacacagcctgagcactcacacagccatgcaaggggcctcaggctctgtgtcaggcctgttgtccacaacacacctccccaagaagccccaagccatgcacactggcctccctaatcctaccaggccagacacacccagagcatccacaccccgcccactgacaatcacagccgcgctgacgtcccttacagcatccgtaaaggccactagactgccttctttgcagacaggaaacacagatgctgcttttccggctgtgtctactgcaatggtcacaactggcaggatggcatccaacttggactgtcagatgtcccacaagttcctcgtgaagacagttttcttcctaactcagaggagaatacagagcagtgagtccttgaagcttggtgtaaccaaagggctcacacaagcattgcggaaggctttccaccagaatgacgtctccgctcacgtggacattctggaatattctcataatgtcacagttggctattatgctaccaaagggaggctggtgtatttgccggctgtggtgatggacgtgctgggtgtgtatggagtcagcaacgtcacggccgatctgaagcagcacgctcccaacttacagtctgtggcagtgcttgcctccccatggaagccccagcctgcaggtgccttccagctgaagacagtgctgcagtttgtaagccagtcagacaacatccagtcctgcaggtttgcccagacaatggagcagaggctgcagaaggcattccaggatgcagagaggaaggtcctcggcaccaggagcaacctgacagttcagatcgtgagcacgtccaatgcctcccaagccgtcacactggtgtatgctgtgggcaatcagagctccttcctcaacggcaccatggccagcagcctccttagccagctctcagctgagctggtaggattctacctcacctaccctccactcaccatcgctgaaccactggaatatcccaaccttgacacatcagaaacaaccagagactactgggtcatcacagtgctccagggtgtggacaactcgctggtgggtctgcacaaccagagctttgcccgggtcatggagcagcgcctggctcagctgttcatgatgtcccagcaacagggtcggcggtttaaacgtgctaccaccttgggaagctacactgtgcagatggtgaagatgcagcgagtgccaggaccgaaggacccggcggagctgacctactacacgctgtacaatgggaagccactgctggggactgcagcagccaagatcctgagcaccattgactcccagaggatggccctgaccctgcatcacgtcgtcctgctgcaagctgaccccgtggtaaagaacccacccaacaacctgtggatcatcgctgcagtgctggctcccatcgccgtggtcaccatcatcatcatcatcatcactgccgtgctctgtaggaagaacaagaacgacttcaagccagacaccatgataa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