2024-05-04 23:03:10, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001408904 989 bp mRNA linear ROD 21-MAR-2023 DEFINITION Rattus norvegicus Rhox homeobox family member 13 (Rhox13), mRNA. ACCESSION NM_001408904 XM_001077350 VERSION NM_001408904.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 989) AUTHORS Gaudet P, Livstone MS, Lewis SE and Thomas PD. TITLE Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium JOURNAL Brief Bioinform 12 (5), 449-462 (2011) PUBMED 21873635 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JACYVU010000455.1. On Jun 30, 2022 this sequence version replaced XM_001077350.7. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMEA5760383, SAMEA5760389 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-642 JACYVU010000455.1 1868200-1868841 643-688 JACYVU010000455.1 1871050-1871095 689-989 JACYVU010000455.1 1874432-1874732 FEATURES Location/Qualifiers source 1..989 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="X" /map="Xq35" gene 1..989 /gene="Rhox13" /note="Rhox homeobox family member 13" /db_xref="GeneID:691244" /db_xref="RGD:1586264" exon 1..642 /gene="Rhox13" /inference="alignment:Splign:2.1.0" misc_feature 62..64 /gene="Rhox13" /note="upstream in-frame stop codon" CDS 104..808 /gene="Rhox13" /note="rCG53272-like; homeobox protein Rhox13" /codon_start=1 /product="reproductive homeobox 13" /protein_id="NP_001395833.1" /db_xref="GeneID:691244" /db_xref="RGD:1586264" /translation="
MAQRVSFDHNYYFMECEEETNAGVQARAVASTSTMEASGAMAVAQAGAACRSHASRGTIGYDTVYEPNVKGDPKQESESDTEESYDDEDDDEDEGDEDDLSTSDQDTSDPEQEEAALFVAAAAPPIAPAAAAIQIPGPHRSRRRRHRRHRRSSPYLFTQWQVEEMENLFEETPYPDVLTRGELARTLNVPEVKVKVWFSNRRAKQRKNERRAMLRNMPSGAEDFIFMTDVEEPC"
misc_feature order(569..571,689..691,698..703,710..712) /gene="Rhox13" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 572..721 /gene="Rhox13" /note="Homeobox domain; Region: Homeobox; pfam00046" /db_xref="CDD:425441" exon 643..688 /gene="Rhox13" /inference="alignment:Splign:2.1.0" exon 689..989 /gene="Rhox13" /inference="alignment:Splign:2.1.0" ORIGIN
ccttgctttcggcttccgtctcgatcagcaaaagacgccaggcatcgaggtagttcgttcctagggccccaaagctcttggtggcttcggcccagttctagttatggcccagagggtctcttttgaccacaactattactttatggagtgtgaggaggaaacaaatgctggcgtccaggctcgggccgtggcctccacctcaaccatggaggcctcaggcgctatggcggtggcgcaggcaggggcagcgtgcaggagccatgccagtcgaggaaccataggctatgacactgtgtatgagccaaatgtcaagggtgatccgaaacaggagagtgagagcgacacggaggagagttacgatgatgaagatgatgatgaagatgaaggtgatgaagatgacttgagcaccagcgaccaggatacttcagatcctgagcaggaggaggcagctctttttgtggctgctgctgctcctccaattgctcctgctgctgctgcgattcagattccgggcccccaccgttcccgccgacgccgacaccgacgccatcggcgtagctccccatacctcttcacgcagtggcaggtcgaggaaatggaaaacctgtttgaagagaccccgtacccagatgtgcttacaaggggagagcttgcaagaactttgaatgtgcctgaagtcaaagtgaaggtgtggtttagcaatcggagagccaagcagaggaagaatgagagacgagcaatgctgagaaatatgccatctggtgctgaagacttcattttcatgacggatgtggaagagccttgttaatgtgccatccttattcagaagacaaagggcaacttagtgacctatgtgcccaatgtcaggcttaactattcagcatgcacattactaataaaagcatgaatttccatgttgcttaacttcatgtgtgttctggggctttgtacgacatgatgtaggctattcaggatgtaggctatttaag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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