2024-05-04 18:56:11, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001399602 1754 bp mRNA linear ROD 12-JAN-2022 DEFINITION Rattus norvegicus Meis homeobox 3 (Meis3), transcript variant 3, mRNA. ACCESSION NM_001399602 XM_006228350 VERSION NM_001399602.1 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 1754) AUTHORS Liu J, Wang Y, Birnbaum MJ and Stoffers DA. TITLE Three-amino-acid-loop-extension homeodomain factor Meis3 regulates cell survival via PDK1 JOURNAL Proc Natl Acad Sci U S A 107 (47), 20494-20499 (2010) PUBMED 21059917 REFERENCE 2 (bases 1 to 1754) AUTHORS Shim S, Kim Y, Shin J, Kim J and Park S. TITLE Regulation of EphA8 gene expression by TALE homeobox transcription factors during development of the mesencephalon JOURNAL Mol Cell Biol 27 (5), 1614-1630 (2007) PUBMED 17178831 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JACYVU010000033.1. On Jan 12, 2022 this sequence version replaced XM_006228350.4. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMD00132263, SAMD00132264 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: full length. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-182 JACYVU010000033.1 739113-739294 183-364 JACYVU010000033.1 741078-741259 365-524 JACYVU010000033.1 741398-741557 525-575 JACYVU010000033.1 741651-741701 576-626 JACYVU010000033.1 742513-742563 627-725 JACYVU010000033.1 742768-742866 726-837 JACYVU010000033.1 745410-745521 838-1013 JACYVU010000033.1 745629-745804 1014-1090 JACYVU010000033.1 747142-747218 1091-1149 JACYVU010000033.1 747389-747447 1150-1233 JACYVU010000033.1 748014-748097 1234-1303 JACYVU010000033.1 748617-748686 1304-1754 JACYVU010000033.1 749195-749645 FEATURES Location/Qualifiers source 1..1754 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="1" /map="1q21" gene 1..1754 /gene="Meis3" /gene_synonym="Mrg2" /note="Meis homeobox 3" /db_xref="GeneID:361514" /db_xref="RGD:1308532" exon 1..182 /gene="Meis3" /gene_synonym="Mrg2" /inference="alignment:Splign:2.1.0" CDS 171..1283 /gene="Meis3" /gene_synonym="Mrg2" /note="isoform 3 is encoded by transcript variant 3; Meis1, myeloid ecotropic viral integration site 1 homolog 3; myeloid ecotropic viral integration site-related gene 2; homeobox protein Meis3" /codon_start=1 /product="homeobox protein Meis3 isoform 3" /protein_id="NP_001386531.1" /db_xref="GeneID:361514" /db_xref="RGD:1308532" /translation="
MARRYEEPRHYPGITEHTAALASFPEAAPSVPRAPGPYGPHRPPQPQGPGLDSDSLKREKDDIYGHPLFPLLALVFEKCELATCSPRDGASAGLGSPPGGDVCSSDSFNEDIAAFAKQIRSERPLFSSNPELDNLMVQAIQVLRFHLLELEKGKMPIDLVIEDRDGGCREDLEDYAASCPSLPDQNTTWIRDHEDSGSVHLGTPGPSSGGLASQSGDNSSDQVQWGMCPSPGDGLDTSVASPSSAGEDEDLDLERRRNKKRGIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRTGQGASFNPEGQSMAGYTETQPHVTVRTPGSMGMNLNLEGEWHYL"
misc_feature 465..668 /gene="Meis3" /gene_synonym="Mrg2" /note="N-terminal of Homeobox Meis and PKNOX1; Region: Meis_PKNOX_N; pfam16493" /db_xref="CDD:435375" misc_feature order(945..956,960..962,1020..1022,1038..1040,1077..1079, 1083..1088,1095..1100,1104..1112) /gene="Meis3" /gene_synonym="Mrg2" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(948..950,957..959,1086..1088,1095..1100,1107..1109) /gene="Meis3" /gene_synonym="Mrg2" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" misc_feature 996..1112 /gene="Meis3" /gene_synonym="Mrg2" /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920" /db_xref="CDD:428673" exon 183..364 /gene="Meis3" /gene_synonym="Mrg2" /inference="alignment:Splign:2.1.0" exon 365..524 /gene="Meis3" /gene_synonym="Mrg2" /inference="alignment:Splign:2.1.0" exon 525..575 /gene="Meis3" /gene_synonym="Mrg2" /inference="alignment:Splign:2.1.0" exon 576..626 /gene="Meis3" /gene_synonym="Mrg2" /inference="alignment:Splign:2.1.0" exon 627..725 /gene="Meis3" /gene_synonym="Mrg2" /inference="alignment:Splign:2.1.0" exon 726..837 /gene="Meis3" /gene_synonym="Mrg2" /inference="alignment:Splign:2.1.0" exon 838..1013 /gene="Meis3" /gene_synonym="Mrg2" /inference="alignment:Splign:2.1.0" exon 1014..1090 /gene="Meis3" /gene_synonym="Mrg2" /inference="alignment:Splign:2.1.0" exon 1091..1149 /gene="Meis3" /gene_synonym="Mrg2" /inference="alignment:Splign:2.1.0" exon 1150..1233 /gene="Meis3" /gene_synonym="Mrg2" /inference="alignment:Splign:2.1.0" exon 1234..1303 /gene="Meis3" /gene_synonym="Mrg2" /inference="alignment:Splign:2.1.0" exon 1304..1754 /gene="Meis3" /gene_synonym="Mrg2" /inference="alignment:Splign:2.1.0" ORIGIN
gtgacacaggccgggcccgtgtgagcccaggagccgccgccaccctcggccgcgatccgcgggtcttggccactcggagaccccggcacccggcggggacctcggggacctccggccgcgatgagccccaggccgtgacctcccgagcccaggacgcgcggcgccggctcatggcccggaggtatgaggagccgcgccactaccccggcattaccgagcacacggcagccctggccagttttccagaggcagcaccttcagtacctcgagctcctgggccctatggcccacaccggccgccccaaccccaaggtccaggcttggacagcgatagcttgaagagagagaaggatgacatctatggacaccccctcttcccactcttggccctggtctttgagaagtgtgagctggctacatgctcgccccgtgatggggcctcggctgggctgggttcacccccaggtggtgacgtctgctcctctgactccttcaatgaggatattgctgcctttgctaagcagatccgctccgagaggccgctgttctcttccaacccggagctggacaacctgatggtccaggccatccaggtactccggttccacctgctggagctggagaaggggaagatgcccatagacctggtgatcgaggatcgggatggtggttgcagggaggaccttgaggactacgcagcctcctgccccagcctcccagaccagaatactacatggatcagagaccatgaggacagtgggtctgtacatttggggaccccaggtccatccagcggaggcctggcctcccagagcggggacaactcaagtgaccaagtccaatggggcatgtgtccttccccaggagatgggctggacaccagcgtggcctctcccagctccgcaggagaggatgaggacctggacctggagcgcagacggaacaagaagagggggatcttccccaaagtggccaccaacatcatgagggcctggttgttccagcatctctcgcacccgtacccctcagaagagcaaaagaaacagctggcccaggacaccgggctcaccattctgcaggtgaacaactggtttattaatgcccggagacggatagtgcagcccatgattgaccagtctaatcgtacagggcagggtgcatctttcaaccctgagggccagtccatggcaggctacacagagactcaaccacatgtgacagtcaggacgccaggatcaatggggatgaatctgaacttagaaggagaatggcattacctatagaggttggggtcaaaaggagggccccagcctctgactatgaccaccagccttgcacctaattggtccctgctggtccctgggcttcaggacttcacctccaaagctcccaccccattcaacgcctacctccctggggcccccagaggcttgaggacccagagcccacttgagggtttctcaagggcaaagacaaagcctcaaggtcctgcacccttcttctgccctcccctttgcccaggacctgagctgagaactgggccaaggtctgaagaagatggtggctggggccccaatccaggacagagaagagactggggttgggcaaggatgggcaaggaaggagggtcagctggatccaatgtttgggagaatccttcatcttcctgctctctgcctctctcacctcccttctctgacattcttctacctttcctttttttaatgataaagtcttaaaagtgcaaatcaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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