2024-04-29 13:44:35, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001399271 1744 bp mRNA linear ROD 12-JUN-2023 DEFINITION Rattus norvegicus ring finger protein 122 (Rnf122), transcript variant 1, mRNA. ACCESSION NM_001399271 XM_039095094 VERSION NM_001399271.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. REFERENCE 1 (bases 1 to 1744) AUTHORS Peng Z, Shi T and Ma D. TITLE RNF122: a novel ubiquitin ligase associated with calcium-modulating cyclophilin ligand JOURNAL BMC Cell Biol 11, 41 (2010) PUBMED 20553626 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1744) AUTHORS Wang L, Gao X, Gao P, Deng W, Yu P, Ma J, Guo J, Wang X, Cheng H, Zhang C, Yu C, Ma X, Lv B, Lu Y, Shi T and Ma D. TITLE Cell-based screening and validation of human novel genes associated with cell viability JOURNAL J Biomol Screen 11 (4), 369-376 (2006) PUBMED 16751333 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JACYVU010000283.1. On Jan 5, 2022 this sequence version replaced XM_039095094.1. ##Evidence-Data-START## Transcript exon combination :: FQ182094.1, SRR8487231.126651.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN16093047, SAMN16676808 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on conservation, expression ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-357 JACYVU010000283.1 10203095-10203451 c 358-514 JACYVU010000283.1 10197115-10197271 c 515-560 JACYVU010000283.1 10190786-10190831 c 561-602 JACYVU010000283.1 10190487-10190528 c 603-685 JACYVU010000283.1 10187210-10187292 c 686-1744 JACYVU010000283.1 10185901-10186959 c FEATURES Location/Qualifiers source 1..1744 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="16" /map="16q12.3" gene 1..1744 /gene="Rnf122" /gene_synonym="RGD1561238" /note="ring finger protein 122" /db_xref="GeneID:502091" /db_xref="RGD:1561238" exon 1..357 /gene="Rnf122" /gene_synonym="RGD1561238" /inference="alignment:Splign:2.1.0" CDS 333..800 /gene="Rnf122" /gene_synonym="RGD1561238" /note="isoform 1 is encoded by transcript variant 1" /codon_start=1 /product="RING finger protein 122 isoform 1" /protein_id="NP_001386200.1" /db_xref="GeneID:502091" /db_xref="RGD:1561238" /translation="
MHPFQWCNGCFCGLGLVSTNKSCSMPPISFQDLPLNIYMVIFGTGIFVFMLSLIFCCYFISKLRNQAQSERYGYKEVVLKGDAKKLQLYGQTCAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKPIAGPTETSQSIGILLDELV"
misc_feature 603..743 /gene="Rnf122" /gene_synonym="RGD1561238" /note="RING finger, H2 subclass, found in RING finger protein 122 (RNF122) and similar proteins; Region: RING-H2_RNF122; cd16676" /db_xref="CDD:438338" misc_feature order(609..611,618..620,663..665,669..671,678..680, 687..689,720..722,729..731) /gene="Rnf122" /gene_synonym="RGD1561238" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:438338" exon 358..514 /gene="Rnf122" /gene_synonym="RGD1561238" /inference="alignment:Splign:2.1.0" exon 515..560 /gene="Rnf122" /gene_synonym="RGD1561238" /inference="alignment:Splign:2.1.0" exon 561..602 /gene="Rnf122" /gene_synonym="RGD1561238" /inference="alignment:Splign:2.1.0" exon 603..685 /gene="Rnf122" /gene_synonym="RGD1561238" /inference="alignment:Splign:2.1.0" exon 686..1744 /gene="Rnf122" /gene_synonym="RGD1561238" /inference="alignment:Splign:2.1.0" ORIGIN
gtcagttttcggaatcccagcgcgcactgctcggagaggagggacccaagcccggcttcgtgtcccggctgctccttctcggccgggcatcccggctctctctgctgccctcccggcccgggcccttcgcgattcccctcggcagggcttcgctccgaaagactttgcttccttctctgccctctttgttgctttgcaaaccgacctctctgcagcccttgactccactcctccgggagttgcatctccatcccggcggtctccgtgcacagtcccgcggattccaaaaccttgcctccgttcgctccgagaagccgaccttcacttcattgatgcacccattccagtggtgtaacgggtgtttctgtggcctggggctggtgagtaccaacaagtcctgctcaatgccaccaatcagtttccaggaccttcccctcaacatctacatggtcatcttcggcactggcatctttgtctttatgctcagtctcatcttctgctgctacttcatcagcaaactccggaaccaggcacagagcgagcgatacggctacaaggaggtggtgcttaaaggtgatgctaagaagttacagctctatgggcagacctgtgcagtttgtctggaagacttcaaggggaaggatgaactaggtgtgcttccgtgccagcatgcctttcaccgcaagtgtctggtgaagtggctagaagtgcgttgcgtctgccccatgtgcaacaagcccattgctggccccacggagacctcacagagcattgggatcctgctggatgaattggtgtaagcgctccttgcgtgcggatactggagaagactgctgactttgcgggcacctgggttccgctacacaaggaacaagattcacactcacctataggcagggatgacagagctgcccttctaccatcaccactggaccagtaccagacttgtccagtgtctgcctcccagggcttctctctgttatacatttccaatggcctcatccaggtagactactctatcctggtactggactgactatccatccacccgcctcatctgggaaggagtcaactctgtgactgtgaacatgggcacttccctttggagaacgagcaactctgaccttgaaagggtcacccctctgtcccacccacgtccttcactcctgccagagccttccatgggatggtttccaggggaaaggaaagaaagatcaagacacgaagatgaaaggctctgtgtaaagtaaaggaaggcagggacctaaaaaagggaaaagtcaatgtttacacgagatgtcggaaacaaaggccagcctcgtcctggccgactacagggtgatgggaccaaccctcccctggtaggatctgaggtgctattcattctctccctggccctggttgatctcagagccgtctagtcacggttggttttgttttgaagagactcctctctataggaaggggtctaatcctcaagtccactttcaggggctttttttttagaagcaaaacgggcctcgggatggggatggtcgggagggtacagtaatgcggatgtctgcttcctctctgtaaatagtatttttatacttcttcaccatctcaggcttacacatgcggccctgcaggatggagggggtggagtgttcccttcctcctcgcctgagcagggcggctgagagtgggaaaaggttatgtatttaaagaaaattaaatttaataacatgtttctctaatcaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]