2024-04-26 17:24:18, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001393802 2802 bp mRNA linear ROD 17-JUL-2023 DEFINITION Rattus norvegicus Rhox homeobox family member 7 (Rhox7), mRNA. ACCESSION NM_001393802 XM_039099574 VERSION NM_001393802.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from JACYVU010000455.1. On Mar 12, 2021 this sequence version replaced XM_039099574.1. ##Evidence-Data-START## RNAseq introns :: mixed/partial sample support SAMEA5760383, SAMEA5760389 [ECO:0000350] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on longest protein ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-70 JACYVU010000455.1 1592626-1592695 c 71-2501 JACYVU010000455.1 1587642-1590072 c 2502-2547 JACYVU010000455.1 1585846-1585891 c 2548-2802 JACYVU010000455.1 1584619-1584873 c FEATURES Location/Qualifiers source 1..2802 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN" /db_xref="taxon:10116" /chromosome="X" /map="Xq35" gene 1..2802 /gene="Rhox7" /note="Rhox homeobox family member 7" /db_xref="GeneID:298353" /db_xref="RGD:1563189" CDS 1..2670 /gene="Rhox7" /note="reproductive homeobox on X chromosome 7; reproductive homeobox 7" /codon_start=1 /product="Rhox homeobox family member 7" /protein_id="NP_001380731.1" /db_xref="GeneID:298353" /db_xref="RGD:1563189" /translation="
MWFSNRRAKERACEKKAMPRSIPGAKAQMILPAGEGRNGEESERSSPGQEASATKWGEVEELGERDRTGSDGENLSAVGTSGIRNDWDKEGASSSRQKNESRPQKPVPECRWGMEDVQPVPVLIPRVQRIQLVQSRVQSVPLKVPVVRPVPIPALSVQPIPISVPKVQPMPITVPQVQAIPPAVPPAQPVPTTVSQDPTGPIPEPHVQPVPVTAPPPQPVPLTTPPPQPVPVTAPPPQGMSIRVPHVQPVPVTAPPSQAMPIRVPHVQPVPVTTPPSQAMPIRVPHVQPVPVSAPPSQAMPIRVPQVQPVSVTAPLSQGMSIRVPHVQPVPVTAPLSQGMPVRVPHVQPVPVSAPLSQAMPIRVPHVQPVPVTALPPQPVPLTAPTPWAVPTRLPHAQPVPVTPAPPQTMPVRVPHVQPLPRTAPLSQAIPIRVPHVQPVPVTTPPSQTMALTAPRSQAMPITVPHVQPVPISLPHVRPMPIPWHYVQPMPDSVPHVQPMALTVPHARHMPVPVPHVHPMPVTVPHVQPMPFPVPQALSMPFPVPQALSMPFPVPQALSMPFPVHQALSMPVPVPVPQVQPVPVTVPHTQRIRGPVPRVQTLPPSVTQSESIPVTVSSIQPKPTTVPRAHRICVPHVQILPPPVTQSESMADTVSPLQPMPVTVPHAQRIRGPVPCVQTLPNSVPQSESMAVTVPTAQTMPPTVPHKERMPGPGPHVQSLLPPVPHEHPMPFTVHQAQPMPVSVSNAQHIPAKESSTPHVPVPREQTSPVGMNCVRPIPNAAPRIRPVAVSATTVQPEPVLVPRRHLHDRFTDPELQELERVFQRNHYLSAEERKELARVMGVSEAKVQRWFKKRREHFRREQSQSGGAPPGNTPPLSEDGAGALVYHP"
misc_feature <745..1935 /gene="Rhox7" /note="large tegument protein UL36; Provisional; Region: PHA03247" /db_xref="CDD:223021" misc_feature 2428..2589 /gene="Rhox7" /note="Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner; Region: homeodomain; cd00086" /db_xref="CDD:238039" misc_feature order(2428..2430,2548..2550,2557..2562,2569..2571) /gene="Rhox7" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 1..70 /gene="Rhox7" /inference="alignment:Splign:2.1.0" exon 71..2501 /gene="Rhox7" /inference="alignment:Splign:2.1.0" exon 2502..2547 /gene="Rhox7" /inference="alignment:Splign:2.1.0" exon 2548..2802 /gene="Rhox7" /inference="alignment:Splign:2.1.0" ORIGIN
atgtggtttagcaataggagagccaaagagagggcctgtgagaagaaagcaatgcccaggagcataccaggtgcgaaagcacagatgatcttgcccgctggagagggaagaaatggggaagagagtgaacggtcgtcccctgggcaggaggcttcagcaacaaaatggggagaagtagaagaactgggagaaagggacagaacggggagtgatggagaaaatctttctgctgtaggaacttcaggcatcaggaatgactgggacaaagagggtgccagcagcagtaggcagaagaatgagagtcggcctcagaagccagtccctgagtgtaggtggggcatggaggatgtacagccagtgccagtactgattccccgtgtacaacggatacaacttgtgcaatcccgggtacagtcggtgcccctaaaggtacctgttgtacggcctgtgcccattcctgcgctcagtgtacagcctataccaatcagtgtgcccaaggtccagcctatgcccattactgtgccccaagtacaggctataccacctgctgtgcccccagcacagcctgtgccaaccactgtgtcccaggaccccactgggcccattcctgagccccatgtacaacctgtgccagttactgctcccccaccacagcctgtgccacttactactcccccaccacagcctgtgccagttactgctcccccaccacagggtatgtcaatcagagtgccccatgtacagcctgtgccagttactgctcccccatcacaggctatgccaatcagagtgccccatgtacagcctgtgccagttactactcccccatcacaggctatgcctatccgagtgccccatgtacagcctgtgccagtttctgctcccccatcacaggctatgccaattagagtgccccaggtacagcctgtgtcagttactgctcctctatcacagggtatgtcaatcagagtaccccatgtacagcctgtgccagttactgctcctctatcacagggtatgccagtcagagtgccccatgtacagcctgtgccagtttctgctcctctatcacaggctatgcctatccgagtgccccatgtacagcctgtgccagttactgctctcccaccacagcctgtgccacttactgctcccacaccatgggctgtgcctaccagactgccccatgcacagcctgtgccagttactcctgccccgccacagactatgccagtcagagtgccccatgtacagcctttgccacgtactgctcctctatcacaggctataccaattagagtgccccatgtacagcctgtgccagttactactcccccatcacagactatggcacttactgctccgagatcacaggctatgccaatcacagtgccccatgtacagcctgtgcccatttctctgcctcatgtacggcccatgcccattccttggcattatgtacagcctatgccagattctgtgccccatgtacagcctatggcactcactgtgcctcatgcacgtcatatgcctgtgcctgtgccccatgtacaccccatgcctgttacagtgccccatgtacagcctatgccttttcctgtgccccaggcactgtctatgccttttcctgtgccccaggcactgtctatgccttttcctgtgccccaggcactgtctatgccttttcctgtgcaccaggcactgtctatgcctgttcctgtgcctgtgccccaggtacagcctgtgccagtcactgtgcctcacacacagcgtatacgtgggcctgtgccccgtgtacagacattgcctccttctgtgacacagtcagagtctatacctgttactgtgtcctccatacagcctaagccaaccactgtgcctcgcgcacaccgtatatgtgtgccccacgtacagatattgcctcctcctgtgacacagtcagagtctatggctgatactgtgtcccccctacagcctatgccagtcactgtgcctcatgcacagcgtatacgtgggcctgtgccctgtgtacagacattgcctaattctgtgccacagtcagagtctatggctgttactgtgcccactgcacagactatgccacccactgtgcctcacaaagagcgtatgcctgggccagggccccatgtacagtcgttgcttcctcctgtgccccacgaacatcctatgccattcactgtgcaccaagcacagcctatgccagtatctgtgtccaatgcacagcatataccagctaaggagtctagcacaccacatgtgccagtgccccgtgaacagacttcaccagtcgggatgaactgtgtacggcccataccaaatgcagcacctcgcataaggccggtggcagtttcggcgaccactgtacagcctgagccagtgctggtgcctcgccgccatctccatgacagatttacagacccagagctgcaggagctggaacgcgttttccagaggaatcactatctcagtgctgaagaaagaaaagagctggcaagggtgatgggcgtgagtgaggccaaagtgcagagatggtttaagaagaggagagaacacttcaggagagaacaaagtcagtcaggtggtgctcctcctgggaatactccacctctctctgaagatggcgcaggagccctagtgtaccacccttgacctagagccactggcagacgcctgctttcttccaccaacatgttattgcctctttatcccctaagcacttgtatttgaaataaatagattctctgtttatttgcttcctgtgtcttctggattagtacggca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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